+D GENES KO
#
KEGG Orthology (KO) - Candidatus Rickettsiella viridis
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rvi00010]
D RVIR1_11320 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RVIR1_03110 pfkA; phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RVIR1_00320 fbaB; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RVIR1_11550 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RVIR1_13560 gap; glyceraldehyde-3-phosphate dehydrogenase type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RVIR1_01750 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RVIR1_10190 gpmI; 2 3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RVIR1_04290 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RVIR1_01760 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RVIR1_09560 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RVIR1_09550 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_00620 mro; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RVIR1_03820 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RVIR1_01230 pckA; phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:rvi00020]
D RVIR1_12310 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RVIR1_03200 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RVIR1_00090 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RVIR1_03880 icd; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RVIR1_06790 sucA; 2-oxoglutarate dehydrogenase E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RVIR1_06800 sucB; dihydrolipoamide succinyltransferase E2 subunit K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_06840 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RVIR1_06830 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RVIR1_06770 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RVIR1_06780 sdhB; succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RVIR1_06760 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RVIR1_05720 fumC; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RVIR1_02850 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RVIR1_01230 pckA; phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D RVIR1_09560 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RVIR1_09550 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:rvi00030]
D RVIR1_11320 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RVIR1_13360 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RVIR1_13550 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RVIR1_00470 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D RVIR1_03820 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RVIR1_06950 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RVIR1_00590 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D RVIR1_00610 kdgK; 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D RVIR1_00320 fbaB; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RVIR1_03110 pfkA; phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:rvi00040]
D RVIR1_00660 rspA; starvation sensing protein K08323 rspA; mannonate dehydratase [EC:4.2.1.8]
D RVIR1_11680 udg; nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RVIR1_11690 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RVIR1_13360 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:rvi00051]
D RVIR1_05440 wbpW; WbpW K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D RVIR1_03820 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RVIR1_05420 gmd; GDP-mannose 4 6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D RVIR1_03110 pfkA; phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RVIR1_00320 fbaB; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RVIR1_11550 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:rvi00052]
D RVIR1_00620 mro; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RVIR1_11690 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RVIR1_03820 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RVIR1_03110 pfkA; phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism
D RVIR1_11680 udg; nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:rvi00500]
D RVIR1_11690 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RVIR1_03820 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RVIR1_11320 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rvi00520]
D RVIR1_12860 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RVIR1_02920 glmS; glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RVIR1_02930 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RVIR1_00430 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RVIR1_05610 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D RVIR1_11830 gph; phosphoglycolate phosphatase-like protein K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D RVIR1_01260 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D RVIR1_01250 mannose-1-phosphate guanyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D RVIR1_00550 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RVIR1_12980 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RVIR1_03430 arnC; glycosyl transferase family 2 K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D RVIR1_03440 arnD; polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D RVIR1_03820 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RVIR1_11690 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RVIR1_11680 udg; nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RVIR1_11320 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RVIR1_05440 wbpW; WbpW K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D RVIR1_05420 gmd; GDP-mannose 4 6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
C 00620 Pyruvate metabolism [PATH:rvi00620]
D RVIR1_09560 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RVIR1_09550 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_01760 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RVIR1_13470 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RVIR1_09510 accB; biotin carboxyl carrier protein of acetyl-coa carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RVIR1_09500 accC; acetyl-CoA carboxylase biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RVIR1_07820 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RVIR1_01150 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D RVIR1_04580 sfcA; malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RVIR1_02850 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RVIR1_05720 fumC; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RVIR1_01230 pckA; phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rvi00630]
D RVIR1_02850 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RVIR1_12310 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RVIR1_03200 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RVIR1_00090 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RVIR1_13320 HAD-superfamily hydrolase subfamily IA variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D RVIR1_04110 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RVIR1_03690 gcvPA; probable glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D RVIR1_03710 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_03700 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D RVIR1_00590 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
C 00640 Propanoate metabolism [PATH:rvi00640]
D RVIR1_01040 pdhA; pyruvate dehydrogenase E1 component alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RVIR1_01030 pdhB; transketolase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RVIR1_01020 pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RVIR1_13470 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RVIR1_09510 accB; biotin carboxyl carrier protein of acetyl-coa carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RVIR1_09500 accC; acetyl-CoA carboxylase biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RVIR1_07820 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RVIR1_06830 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RVIR1_06840 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RVIR1_00090 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism [PATH:rvi00650]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RVIR1_06770 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RVIR1_06780 sdhB; succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RVIR1_06760 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
C 00660 C5-Branched dibasic acid metabolism
D RVIR1_06830 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RVIR1_06840 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00562 Inositol phosphate metabolism [PATH:rvi00562]
D RVIR1_12760 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RVIR1_11550 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rvi00190]
D RVIR1_08380 nuoA; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RVIR1_08370 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RVIR1_08360 nuoC; NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RVIR1_08350 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RVIR1_08340 nuoE; NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RVIR1_08330 nuoF; NADH-quinone oxidoreductase F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D RVIR1_08320 nuoG; NADH dehydrogenase I chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RVIR1_08310 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RVIR1_08300 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RVIR1_08290 nuoJ; NADH-quinone oxidoreductase chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RVIR1_08280 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RVIR1_08270 nuoL; NADH-quinone oxidoreductase chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RVIR1_08260 nuoM; NADH-quinone oxidoreductase chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RVIR1_08250 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RVIR1_06770 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RVIR1_06780 sdhB; succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RVIR1_06760 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RVIR1_01310 qxtA; cytochrome bd-I oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RVIR1_01320 qxtB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RVIR1_00390 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RVIR1_00410 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RVIR1_00400 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RVIR1_00380 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RVIR1_00420 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RVIR1_00350 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RVIR1_00370 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RVIR1_00360 atpE; ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RVIR1_12410 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms [PATH:rvi00710]
D RVIR1_01750 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RVIR1_13560 gap; glyceraldehyde-3-phosphate dehydrogenase type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RVIR1_00320 fbaB; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RVIR1_13550 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RVIR1_00470 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D RVIR1_11550 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RVIR1_13360 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RVIR1_01230 pckA; phosphoenolpyruvate carboxykinase [ATP] K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D RVIR1_02850 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Carbon fixation pathways in prokaryotes [PATH:rvi00720]
D RVIR1_02850 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RVIR1_05720 fumC; fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RVIR1_06770 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RVIR1_06780 sdhB; succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RVIR1_06760 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RVIR1_06840 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RVIR1_06830 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RVIR1_03880 icd; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RVIR1_03200 acnA; aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RVIR1_00090 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RVIR1_13470 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RVIR1_09510 accB; biotin carboxyl carrier protein of acetyl-coa carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RVIR1_09500 accC; acetyl-CoA carboxylase biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RVIR1_07820 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RVIR1_10530 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
C 00680 Methane metabolism [PATH:rvi00680]
D RVIR1_04110 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RVIR1_04290 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RVIR1_02850 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RVIR1_00320 fbaB; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RVIR1_03110 pfkA; phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RVIR1_10190 gpmI; 2 3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
C 00910 Nitrogen metabolism [PATH:rvi00910]
D RVIR1_11810 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RVIR1_00930 cynT; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism
D RVIR1_02840 cysQ1; 3'(2') 5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rvi00061]
D RVIR1_13470 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D RVIR1_09510 accB; biotin carboxyl carrier protein of acetyl-coa carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D RVIR1_09500 accC; acetyl-CoA carboxylase biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D RVIR1_07820 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D RVIR1_07540 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RVIR1_07520 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RVIR1_07490 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RVIR1_07550 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RVIR1_03240 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RVIR1_07530 fabG; 3-ketoacyl-(Acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RVIR1_08580 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RVIR1_04380 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RVIR1_04990 fadD; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rvi00071]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RVIR1_11990 fadE; acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D RVIR1_04990 fadD; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RVIR1_02640 znuC; AMP-dependent synthetase and ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rvi00561]
D RVIR1_07480 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D RVIR1_10640 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RVIR1_09830 dgkA; diacylglycerol kinase DagK K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:rvi00564]
D RVIR1_03190 gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RVIR1_10640 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D RVIR1_09830 dgkA; diacylglycerol kinase DagK K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D RVIR1_02000 ugd; glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RVIR1_02640 znuC; AMP-dependent synthetase and ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D RVIR1_02110 phospholipid N-methyltransferase-like protein K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D RVIR1_08630 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RVIR1_01190 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RVIR1_01110 psd; phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RVIR1_07120 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RVIR1_04150 pgpA; phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D RVIR1_08780 pgsA2; CDP-alcohol phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rvi01040]
D RVIR1_08220 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RVIR1_11840 xerD; thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rvi00230]
D RVIR1_00860 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D RVIR1_03820 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RVIR1_06950 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RVIR1_14260 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RVIR1_14690 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RVIR1_03940 xapA; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RVIR1_12130 yfhQ; uncharacterized protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RVIR1_12870 ppt; hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RVIR1_01990 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RVIR1_02010 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RVIR1_04010 Ham1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RVIR1_01980 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RVIR1_05540 guaC; GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D RVIR1_13020 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RVIR1_03810 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RVIR1_03800 nrdB; ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RVIR1_13580 spoT; guanosine-3' 5'-bis(Diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RVIR1_12370 relA; (P)ppGpp synthetase I SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D RVIR1_05470 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RVIR1_07600 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D RVIR1_12330 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RVIR1_14770 apaH; bis(5'-nucleosyl)-tetraphosphatase symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
C 00240 Pyrimidine metabolism [PATH:rvi00240]
D RVIR1_01680 carB; carbamoyl-phosphate synthase K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RVIR1_01670 carA; carbamoyl-phosphate synthase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RVIR1_01690 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RVIR1_01710 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RVIR1_07770 pyrF; orotidine 5'-phosphate decarboxylase K13421 UMPS; uridine monophosphate synthetase [EC:2.4.2.10 4.1.1.23]
D RVIR1_06480 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D RVIR1_08660 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RVIR1_02010 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RVIR1_05340 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RVIR1_07760 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RVIR1_04390 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D RVIR1_14690 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RVIR1_04680 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D RVIR1_00990 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RVIR1_03810 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RVIR1_03800 nrdB; ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RVIR1_07570 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RVIR1_05070 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RVIR1_14480 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D RVIR1_11660 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RVIR1_01660 pyrD; dihydroorotate dehydrogenase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rvi00250]
D RVIR1_04840 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RVIR1_05470 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RVIR1_14260 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RVIR1_01690 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RVIR1_11810 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RVIR1_09600 putA; putative bifunctional PutA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RVIR1_01680 carB; carbamoyl-phosphate synthase K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RVIR1_01670 carA; carbamoyl-phosphate synthase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RVIR1_02920 glmS; glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
C 00260 Glycine, serine and threonine metabolism [PATH:rvi00260]
D RVIR1_03280 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RVIR1_10770 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RVIR1_04110 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RVIR1_10190 gpmI; 2 3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D RVIR1_03690 gcvPA; probable glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D RVIR1_03710 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_03700 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D RVIR1_01190 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RVIR1_06850 cysK; cysteine synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D RVIR1_14050 metB; cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RVIR1_13680 sdhL; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00270 Cysteine and methionine metabolism [PATH:rvi00270]
D RVIR1_14050 metB; cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RVIR1_06850 cysK; cysteine synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22]
D RVIR1_14450 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RVIR1_12130 yfhQ; uncharacterized protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RVIR1_14440 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RVIR1_03280 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RVIR1_10770 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RVIR1_05910 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RVIR1_04840 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RVIR1_02850 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RVIR1_13680 sdhL; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00280 Valine, leucine and isoleucine degradation [PATH:rvi00280]
D RVIR1_01050 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D RVIR1_01040 pdhA; pyruvate dehydrogenase E1 component alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RVIR1_01030 pdhB; transketolase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RVIR1_01020 pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rvi00290]
D RVIR1_01050 Glu/Leu/Phe/Val dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
C 00300 Lysine biosynthesis [PATH:rvi00300]
D RVIR1_03280 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RVIR1_10770 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RVIR1_01270 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RVIR1_13110 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RVIR1_11500 dapD; 2 3 4 5-tetrahydropyridine-2 6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RVIR1_14040 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RVIR1_12270 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RVIR1_05790 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RVIR1_05800 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RVIR1_09790 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RVIR1_09760 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rvi00310]
D RVIR1_06800 sucB; dihydrolipoamide succinyltransferase E2 subunit K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00220 Arginine biosynthesis [PATH:rvi00220]
D RVIR1_11290 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RVIR1_01680 carB; carbamoyl-phosphate synthase K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RVIR1_01670 carA; carbamoyl-phosphate synthase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RVIR1_11810 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RVIR1_04840 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RVIR1_14040 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:rvi00330]
D RVIR1_13610 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D RVIR1_13590 speF; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D RVIR1_14430 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferases subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RVIR1_11290 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RVIR1_11280 rocD; acetylornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D RVIR1_01240 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RVIR1_09600 putA; putative bifunctional PutA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RVIR1_04840 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism
D RVIR1_02120 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00350 Tyrosine metabolism [PATH:rvi00350]
D RVIR1_04840 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RVIR1_02120 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:rvi00360]
D RVIR1_04840 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RVIR1_02120 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RVIR1_14430 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferases subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00380 Tryptophan metabolism [PATH:rvi00380]
D RVIR1_06800 sucB; dihydrolipoamide succinyltransferase E2 subunit K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RVIR1_14430 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferases subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rvi00400]
D RVIR1_04840 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RVIR1_02120 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rvi00410]
D RVIR1_13620 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RVIR1_01660 pyrD; dihydroorotate dehydrogenase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism
D RVIR1_11810 glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:rvi00450]
D RVIR1_14050 metB; cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RVIR1_05940 sufS; cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D RVIR1_02870 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RVIR1_00960 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D RVIR1_04110 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rvi00470]
D RVIR1_04500 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RVIR1_08450 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RVIR1_14530 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RVIR1_12950 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RVIR1_05790 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RVIR1_05800 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:rvi00480]
D RVIR1_05910 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D RVIR1_10550 pepB; leucyl aminopeptidase PepB putative K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RVIR1_12050 pepA; probable cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RVIR1_13090 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RVIR1_07670 gst; glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RVIR1_03880 icd; isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RVIR1_13590 speF; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:rvi00540]
D RVIR1_08570 lpxA; acyl-(Acyl carrier protein)-UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RVIR1_11740 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RVIR1_08590 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RVIR1_06500 lpxH; UDP-2 3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RVIR1_08560 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RVIR1_03470 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RVIR1_14200 kdsD; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RVIR1_04280 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RVIR1_12710 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RVIR1_13340 kdtA; three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RVIR1_13520 htrB; lipid A biosynthesis (KDO)2-(Lauroyl)-lipid IVA acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RVIR1_04810 lipid A deacylase K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D RVIR1_00290 hldE; bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D RVIR1_04620 gmhB; D D-heptose 1 7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D RVIR1_00300 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D RVIR1_13640 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D RVIR1_14800 rfaF; glycosyl transferase putative gt9A K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D RVIR1_05230 heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D RVIR1_05250 O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:rvi00542]
D RVIR1_05300 rfe; UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rvi00541]
D RVIR1_11690 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RVIR1_11680 udg; nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RVIR1_03450 waaE; putative gnat family acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D RVIR1_05440 wbpW; WbpW K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D RVIR1_05420 gmd; GDP-mannose 4 6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D RVIR1_00430 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:rvi00550]
D RVIR1_00550 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RVIR1_12980 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RVIR1_12970 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RVIR1_12950 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RVIR1_09790 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RVIR1_08450 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RVIR1_09760 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RVIR1_08640 uppS; ditrans polycis-undecaprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RVIR1_09750 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RVIR1_01490 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RVIR1_12560 ponA; fused penicillin-binding protein 1a: murein transglycosylase murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RVIR1_13890 mrdA; cell elongation specific D D-transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RVIR1_05690 ftsI; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RVIR1_01540 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RVIR1_12360 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RVIR1_04520 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:rvi00552]
D RVIR1_05300 rfe; UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rvi00543]
D RVIR1_05300 rfe; UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rvi00730]
D RVIR1_06660 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D RVIR1_11440 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RVIR1_06680 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D RVIR1_06670 thiE; thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D RVIR1_04140 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D RVIR1_12330 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RVIR1_06650 tenA; thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:rvi00740]
D RVIR1_03080 ribBA; riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RVIR1_03090 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RVIR1_03070 ribH; 6 7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RVIR1_13330 ribE; riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RVIR1_03030 ribF; bifunctional flavokinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D RVIR1_06680 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D RVIR1_00860 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:rvi00750]
D RVIR1_03480 pdxY; pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D RVIR1_09160 pdxS; pyridoxal biosynthesis lyase PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D RVIR1_09170 pdxT; glutamine amidotransferase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rvi00760]
D RVIR1_09320 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D RVIR1_03940 xapA; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RVIR1_14690 surE; 5'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D RVIR1_04220 nadD; probable nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D RVIR1_12080 nadE; NAD synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D RVIR1_11580 ppnK; probable inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:rvi00770]
D RVIR1_13630 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RVIR1_13620 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RVIR1_02130 coaX; type III pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D RVIR1_13950 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D RVIR1_07450 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RVIR1_00820 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RVIR1_08900 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D RVIR1_03130 acpS; 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D RVIR1_01660 pyrD; dihydroorotate dehydrogenase K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
C 00780 Biotin metabolism [PATH:rvi00780]
D RVIR1_07550 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RVIR1_03240 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RVIR1_07530 fabG; 3-ketoacyl-(Acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RVIR1_08580 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RVIR1_04380 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RVIR1_14590 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D RVIR1_14640 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D RVIR1_14570 bioD; ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D RVIR1_14600 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D RVIR1_00160 birA; biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rvi00785]
D RVIR1_14740 lipB; octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RVIR1_14750 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_09560 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RVIR1_09550 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RVIR1_06790 sucA; 2-oxoglutarate dehydrogenase E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RVIR1_06800 sucB; dihydrolipoamide succinyltransferase E2 subunit K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RVIR1_01040 pdhA; pyruvate dehydrogenase E1 component alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RVIR1_01030 pdhB; transketolase K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RVIR1_01020 pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RVIR1_03690 gcvPA; probable glycine dehydrogenase (decarboxylating) subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D RVIR1_03710 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RVIR1_03700 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rvi00790]
D RVIR1_07610 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RVIR1_01170 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D RVIR1_03670 folKP; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K13941 folKP; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase [EC:2.7.6.3 2.5.1.15]
D RVIR1_07810 folC; bifunctional protein FolC K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RVIR1_03080 ribBA; riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RVIR1_06010 short-chain dehydrogenase/reductase SDR K03793 PTR1; pteridine reductase [EC:1.5.1.33]
C 00670 One carbon pool by folate [PATH:rvi00670]
D RVIR1_10530 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RVIR1_04110 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RVIR1_01350 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RVIR1_03710 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RVIR1_11660 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RVIR1_04540 yfiH; 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rvi00860]
D RVIR1_06240 gltX; glutamate--tRNA ligase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RVIR1_09480 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D RVIR1_13880 hemL; glutamate-1-semialdehyde 2 1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RVIR1_02720 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RVIR1_01570 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RVIR1_01740 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RVIR1_12500 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RVIR1_09210 hemF; coproporphyrinogen-III oxidase aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D RVIR1_09220 uncharacterized protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D RVIR1_10060 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RVIR1_01730 hemX; uroporphyrin-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rvi00130]
D RVIR1_07440 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RVIR1_04590 visC; putative VisC protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D RVIR1_11820 ubiG; ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D RVIR1_04570 ubiH; 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D RVIR1_14380 ubiE; ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RVIR1_13930 coq7; 2-nonaprenyl-3-methyl-6-methoxy-1 4-benzoquinol hydroxylase K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D RVIR1_08750 wrbA; Trp repressor binding protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rvi00900]
D RVIR1_11440 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RVIR1_08620 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D RVIR1_02830 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D RVIR1_06970 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D RVIR1_02990 ispF; 2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D RVIR1_09950 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D RVIR1_14330 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RVIR1_13820 ispA; farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RVIR1_04440 ispB; farnesyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RVIR1_08640 uppS; ditrans polycis-undecaprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:rvi00907]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RVIR1_13550 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:rvi00261]
D RVIR1_03280 lysC; aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RVIR1_10770 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RVIR1_01270 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RVIR1_13110 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rvi00521]
D RVIR1_03820 algC; phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D RVIR1_12760 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis [PATH:rvi00401]
D RVIR1_04840 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RVIR1_02120 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D RVIR1_07520 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RVIR1_03240 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RVIR1_07530 fabG; 3-ketoacyl-(Acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RVIR1_04380 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RVIR1_07540 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D RVIR1_14450 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rvi00362]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D RVIR1_14430 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferases subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:rvi00643]
D RVIR1_14430 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferases subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:rvi00930]
D RVIR1_11970 yfcX; YfcX enoyl CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rvi03020]
D RVIR1_11150 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RVIR1_11140 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RVIR1_10820 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RVIR1_13570 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rvi03010]
D RVIR1_07750 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RVIR1_08680 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RVIR1_11010 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RVIR1_10830 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RVIR1_10900 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RVIR1_04450 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RVIR1_11110 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RVIR1_10930 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RVIR1_02700 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RVIR1_11080 rpsJ; 30S ibosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RVIR1_10840 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RVIR1_11120 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RVIR1_10850 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RVIR1_10940 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RVIR1_01610 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RVIR1_12190 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RVIR1_10980 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RVIR1_04460 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RVIR1_11030 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RVIR1_13900 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RVIR1_10610 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RVIR1_11190 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RVIR1_11040 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RVIR1_11070 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RVIR1_11060 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RVIR1_10950 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RVIR1_10920 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RVIR1_11160 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RVIR1_04480 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RVIR1_11170 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RVIR1_11200 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RVIR1_02710 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RVIR1_10970 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RVIR1_10880 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RVIR1_11000 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RVIR1_10810 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RVIR1_10910 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RVIR1_12220 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RVIR1_04900 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RVIR1_08820 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RVIR1_11020 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RVIR1_11050 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RVIR1_10960 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RVIR1_06900 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RVIR1_08810 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RVIR1_08170 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RVIR1_10990 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RVIR1_10890 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RVIR1_04820 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RVIR1_07470 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RVIR1_08180 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RVIR1_14840 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RVIR1_04890 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RVIR1_10860 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rvi00970]
D RVIR1_06290 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RVIR1_02620 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RVIR1_13130 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RVIR1_03310 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RVIR1_03490 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RVIR1_08830 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RVIR1_02800 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RVIR1_07140 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RVIR1_06960 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RVIR1_00910 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RVIR1_11250 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RVIR1_07130 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RVIR1_02610 tRNA-His K14226 tRNA-His; tRNA His
D RVIR1_08510 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RVIR1_12840 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RVIR1_02730 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_07150 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_02980 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_01640 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_11530 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_02600 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RVIR1_10500 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RVIR1_03650 tRNA-Met K14230 tRNA-Met; tRNA Met
D RVIR1_04740 tRNA-Met K14230 tRNA-Met; tRNA Met
D RVIR1_10740 tRNA-Met K14230 tRNA-Met; tRNA Met
D RVIR1_09650 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RVIR1_02630 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RVIR1_07240 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RVIR1_04420 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RVIR1_04950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RVIR1_03300 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RVIR1_01290 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RVIR1_07070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RVIR1_00150 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RVIR1_13770 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RVIR1_11240 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RVIR1_11230 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RVIR1_11260 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RVIR1_02790 tRNA-Val K14237 tRNA-Val; tRNA Val
D RVIR1_04860 tRNA-Val K14237 tRNA-Val; tRNA Val
D RVIR1_06240 gltX; glutamate--tRNA ligase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RVIR1_06520 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D RVIR1_05160 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RVIR1_05150 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RVIR1_05170 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RVIR1_03270 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RVIR1_08100 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RVIR1_00070 glyQS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RVIR1_04870 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RVIR1_10520 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RVIR1_06530 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RVIR1_00960 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RVIR1_01350 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RVIR1_12460 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RVIR1_04250 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RVIR1_13740 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RVIR1_08200 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RVIR1_01390 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RVIR1_08140 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RVIR1_02040 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RVIR1_07200 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RVIR1_07210 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RVIR1_01450 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RVIR1_01200 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rvi03060]
D RVIR1_10870 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RVIR1_11220 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RVIR1_11540 secG; putative preprotein translocase SecG Subunit K03075 secG; preprotein translocase subunit SecG
D RVIR1_12780 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RVIR1_12770 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D RVIR1_12790 yajC; protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D RVIR1_14820 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RVIR1_11460 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RVIR1_00810 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RVIR1_12180 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RVIR1_09240 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D RVIR1_05840 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RVIR1_13720 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rvi04122]
D RVIR1_14070 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RVIR1_14510 tusE; sulfurtransferase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D RVIR1_14060 tRNA methyl transferase-like protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RVIR1_12940 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
C 03050 Proteasome
C 03018 RNA degradation [PATH:rvi03018]
D RVIR1_00220 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RVIR1_06450 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RVIR1_04290 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RVIR1_01620 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RVIR1_09140 rhlE-2; DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RVIR1_07000 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RVIR1_12890 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RVIR1_11600 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RVIR1_11930 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RVIR1_05510 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D RVIR1_11310 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rvi03030]
D RVIR1_12480 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RVIR1_11780 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RVIR1_04940 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RVIR1_07580 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RVIR1_04230 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RVIR1_12450 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RVIR1_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RVIR1_04490 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RVIR1_10590 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RVIR1_07350 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RVIR1_11730 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RVIR1_08550 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RVIR1_05530 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RVIR1_05020 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rvi03410]
D RVIR1_01590 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RVIR1_03960 mutY; A / G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RVIR1_11800 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RVIR1_14720 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RVIR1_03830 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RVIR1_14090 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RVIR1_05530 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RVIR1_09900 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RVIR1_05020 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rvi03420]
D RVIR1_07360 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D RVIR1_12610 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RVIR1_05530 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RVIR1_05020 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:rvi03430]
D RVIR1_01180 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RVIR1_04050 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D RVIR1_12610 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RVIR1_12380 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RVIR1_13830 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RVIR1_09900 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RVIR1_07350 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RVIR1_11780 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RVIR1_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RVIR1_04940 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RVIR1_04230 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RVIR1_07580 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RVIR1_12480 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RVIR1_12450 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RVIR1_05020 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RVIR1_02080 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:rvi03440]
D RVIR1_09900 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RVIR1_07350 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RVIR1_00030 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RVIR1_11870 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RVIR1_04920 recR; recombination protein RecR K06187 recR; recombination protein RecR
D RVIR1_00280 recA; recombinase A K03553 recA; recombination protein RecA
D RVIR1_05530 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RVIR1_08050 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RVIR1_08010 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RVIR1_08060 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RVIR1_09520 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RVIR1_11780 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RVIR1_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RVIR1_04940 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RVIR1_04230 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RVIR1_07580 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RVIR1_12480 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RVIR1_12450 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RVIR1_13660 priA; primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rvi02010]
D RVIR1_12600 thiY; ABC transporter periplasmic substrate-binding component K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D RVIR1_12590 ABC transporter permease K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D RVIR1_07840 potD; putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RVIR1_07850 potC; spermidine putrescine ABC transporter permease component potC K11070 potC; spermidine/putrescine transport system permease protein
D RVIR1_07860 potB; spermidine/putrescine ABC transporter membrane protein K11071 potB; spermidine/putrescine transport system permease protein
D RVIR1_07870 potA; spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RVIR1_00530 mlaC; periplasmic binding protein of phospholipid ABC transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D RVIR1_00520 mlaD; substrate binding protein of phospholipid ABC transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RVIR1_09430 ABC transport system periplasmic substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RVIR1_00510 mlaE; integral membrane protein of phospholipid ABC transporter K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RVIR1_00540 mlaB; phospholipid ABC transporter - MlaB subunit K07122 mlaB; phospholipid transport system transporter-binding protein
D RVIR1_00500 mlaF; ATP binding component of phospholipid ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RVIR1_09420 yraP; ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RVIR1_07620 metQ; D-methionine transport system substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RVIR1_07630 metI; D-methionine transport system permease protein K02072 metI; D-methionine transport system permease protein
D RVIR1_07640 metN; D-methionine transport system ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D RVIR1_05350 rfbD; lipopolysaccharide transport system permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D RVIR1_05360 rfbE; ABC transporter related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RVIR1_04370 lolC; outer membrane-specific lipoprotein transporter subunit membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D RVIR1_04360 lolD; lipoprotein releasing system ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RVIR1_12060 lptF; Lipopolysaccharide export system permease protein K07091 lptF; lipopolysaccharide export system permease protein
D RVIR1_12070 lptG; Lipopolysaccharide export system permease protein K11720 lptG; lipopolysaccharide export system permease protein
D RVIR1_14240 lptB; lipopolysaccharide export system ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RVIR1_05280 msbA; phospholipid-lipopolysaccharide ABC transporter K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
C 02060 Phosphotransferase system (PTS) [PATH:rvi02060]
D RVIR1_00760 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D RVIR1_00230 ptsP; phosphoenolpyruvate protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
C 03070 Bacterial secretion system [PATH:rvi03070]
D RVIR1_00850 tolC; putative type I secretion outer membrane efflux TolC protein K12340 tolC; outer membrane protein
D RVIR1_12780 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RVIR1_12770 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D RVIR1_11220 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RVIR1_11540 secG; putative preprotein translocase SecG Subunit K03075 secG; preprotein translocase subunit SecG
D RVIR1_10870 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RVIR1_12790 yajC; protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D RVIR1_14820 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RVIR1_11460 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RVIR1_09240 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D RVIR1_00810 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RVIR1_12180 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RVIR1_10310 plasmid conjugal transfer protein TrbD/VirB3 K03198 virB3; type IV secretion system protein VirB3
D RVIR1_02410 virB3; type IV secretory systen protein VirB3 K03198 virB3; type IV secretion system protein VirB3
D RVIR1_10330 Legionella vir homologue protein B5 K03200 virB5; type IV secretion system protein VirB5
D RVIR1_02430 type IV secretory systen protein VirB5 K03200 virB5; type IV secretion system protein VirB5
D RVIR1_10360 virB6; Legionella vir homologue protein K03201 virB6; type IV secretion system protein VirB6
D RVIR1_02460 virB6; type IV secretory systen protein VirB6 K03201 virB6; type IV secretion system protein VirB6
D RVIR1_10390 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D RVIR1_02490 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D RVIR1_10320 virB4; type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RVIR1_02420 virB4; type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RVIR1_10400 virB11; type IV secretion system protein VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RVIR1_02500 virB11; type IV secretion system protein VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rvi02020]
D RVIR1_13940 htrA; periplasmic serine protease Do heat shock protein HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D RVIR1_05000 qseC; sensory histidine kinase in two-component regulatory system with QseB K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D RVIR1_05010 qseB; transcriptional regulatory protein K07666 qseB; two-component system, OmpR family, response regulator QseB
D RVIR1_08910 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_09680 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_09720 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_04690 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RVIR1_12660 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RVIR1_04580 sfcA; malate dehydrogenase K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D RVIR1_07080 sirA; GacA-like protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RVIR1_03290 csrA; carbon storage regulator homolog K03563 csrA; carbon storage regulator
D RVIR1_03550 protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RVIR1_03560 spore coat protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RVIR1_03590 putative secreted pili protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RVIR1_03570 putative pili assembly chaperone transmembrane protein K07346 fimC; fimbrial chaperone protein
D RVIR1_03580 fimD; putative outer membrane usher transmembrane protein K07347 fimD; outer membrane usher protein
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RVIR1_13750 pilA; pilus assembly protein PilA K02650 pilA; type IV pilus assembly protein PilA
D RVIR1_01310 qxtA; cytochrome bd-I oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RVIR1_01320 qxtB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RVIR1_00850 tolC; putative type I secretion outer membrane efflux TolC protein K12340 tolC; outer membrane protein
D RVIR1_04970 signal transduction histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:rvi04148]
D RVIR1_11290 rocF; arginase K01476 rocF; arginase [EC:3.5.3.1]
D RVIR1_13590 speF; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rvi02024]
D RVIR1_05510 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D RVIR1_05000 qseC; sensory histidine kinase in two-component regulatory system with QseB K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D RVIR1_05010 qseB; transcriptional regulatory protein K07666 qseB; two-component system, OmpR family, response regulator QseB
D RVIR1_13710 gadC; putative amino acid antiporter K20265 gadC; glutamate:GABA antiporter
D RVIR1_04990 fadD; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RVIR1_03090 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RVIR1_14820 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RVIR1_11220 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RVIR1_11540 secG; putative preprotein translocase SecG Subunit K03075 secG; preprotein translocase subunit SecG
D RVIR1_10870 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RVIR1_12790 yajC; protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D RVIR1_11460 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RVIR1_09240 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D RVIR1_00810 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RVIR1_12180 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D RVIR1_03660 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RVIR1_04290 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rvi01501]
D RVIR1_11900 ampG; Na+/melibiose symporter or related transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RVIR1_12860 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RVIR1_13050 putative HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_11480 related to multidrug-efflux transport protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_13040 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D RVIR1_11490 hydrophobic/amphiphilic exporter-1 K18138 acrB; multidrug efflux pump
D RVIR1_00850 tolC; putative type I secretion outer membrane efflux TolC protein K12340 tolC; outer membrane protein
D RVIR1_12560 ponA; fused penicillin-binding protein 1a: murein transglycosylase murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RVIR1_13890 mrdA; cell elongation specific D D-transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RVIR1_05690 ftsI; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rvi01502]
D RVIR1_12660 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RVIR1_08450 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RVIR1_04500 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RVIR1_09760 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RVIR1_09750 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RVIR1_01490 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rvi01503]
D RVIR1_03430 arnC; glycosyl transferase family 2 K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D RVIR1_03440 arnD; polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D RVIR1_13940 htrA; periplasmic serine protease Do heat shock protein HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D RVIR1_00490 dsbA; thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RVIR1_13050 putative HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_11480 related to multidrug-efflux transport protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_13040 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D RVIR1_11490 hydrophobic/amphiphilic exporter-1 K18138 acrB; multidrug efflux pump
D RVIR1_00850 tolC; putative type I secretion outer membrane efflux TolC protein K12340 tolC; outer membrane protein
D RVIR1_08570 lpxA; acyl-(Acyl carrier protein)-UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rvi01000]
C 01001 Protein kinases [BR:rvi01001]
D RVIR1_05000 qseC; sensory histidine kinase in two-component regulatory system with QseB K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D RVIR1_08910 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_09680 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_09720 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_04690 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_04970 signal transduction histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rvi01009]
D RVIR1_14440 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RVIR1_00670 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:rvi01002]
D RVIR1_13720 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RVIR1_03160 pilD; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RVIR1_11960 pla; protease VII K08566 pla; plasminogen activator [EC:3.4.23.48]
D RVIR1_01980 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RVIR1_02920 glmS; glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RVIR1_10120 erfK; ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D RVIR1_09940 peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D RVIR1_13090 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RVIR1_00260 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D RVIR1_12660 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RVIR1_13840 peptidase M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D RVIR1_13850 non-proteolytic protein peptidase family M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D RVIR1_10550 pepB; leucyl aminopeptidase PepB putative K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RVIR1_12050 pepA; probable cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RVIR1_12270 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RVIR1_11470 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RVIR1_04560 pepP; proline aminopeptidase P II K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RVIR1_02940 ftsH; ATP-dependent zinc metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RVIR1_11950 htpX; heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D RVIR1_13940 htrA; periplasmic serine protease Do heat shock protein HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D RVIR1_01540 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RVIR1_12360 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RVIR1_04520 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RVIR1_02750 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RVIR1_02770 lon; lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D RVIR1_05840 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RVIR1_10210 ctpA; carboxy-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RVIR1_14310 sppA; protease transmembrane protein K04773 sppA; protease IV [EC:3.4.21.-]
D RVIR1_04270 sohB; non-proteolytic protein peptidase family S49 K04774 sohB; serine protease SohB [EC:3.4.21.-]
D RVIR1_03230 mccF; putative LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D RVIR1_01410 hslV; ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D RVIR1_00780 pmbA; peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein
D RVIR1_05270 tldD; TldD protein K03568 tldD; TldD protein
D RVIR1_05480 hflC; protein HflC K04087 hflC; modulator of FtsH protease HflC
D RVIR1_05490 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:rvi01003]
D RVIR1_12560 ponA; fused penicillin-binding protein 1a: murein transglycosylase murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RVIR1_05300 rfe; UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RVIR1_10160 putative integral membrane protein K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rvi01005]
D RVIR1_08570 lpxA; acyl-(Acyl carrier protein)-UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RVIR1_08560 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RVIR1_11740 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RVIR1_08590 lpxD; UDP-3-O-acylglucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RVIR1_06500 lpxH; UDP-2 3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RVIR1_03470 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RVIR1_13520 htrB; lipid A biosynthesis (KDO)2-(Lauroyl)-lipid IVA acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RVIR1_13340 kdtA; three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RVIR1_04810 lipid A deacylase K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-]
D RVIR1_04280 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RVIR1_12710 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RVIR1_14200 kdsD; arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RVIR1_13640 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D RVIR1_14800 rfaF; glycosyl transferase putative gt9A K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D RVIR1_05250 O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D RVIR1_05230 heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D RVIR1_04620 gmhB; D D-heptose 1 7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D RVIR1_00290 hldE; bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D RVIR1_00300 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D RVIR1_05300 rfe; UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rvi01011]
D RVIR1_00550 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RVIR1_12980 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RVIR1_12970 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RVIR1_12950 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RVIR1_09790 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RVIR1_08450 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RVIR1_04500 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RVIR1_14530 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RVIR1_03230 mccF; putative LD-carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D RVIR1_09750 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RVIR1_01490 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RVIR1_03020 mviN; virulence factor mviN K03980 murJ; putative peptidoglycan lipid II flippase
D RVIR1_12560 ponA; fused penicillin-binding protein 1a: murein transglycosylase murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RVIR1_13890 mrdA; cell elongation specific D D-transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RVIR1_05690 ftsI; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RVIR1_01540 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RVIR1_12360 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RVIR1_04520 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RVIR1_10120 erfK; ErfK/YbiS/YcfS/YnhG family protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D RVIR1_09940 peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D RVIR1_12660 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RVIR1_07300 slt; lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RVIR1_10140 mltB; membrane bound lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D RVIR1_07560 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RVIR1_10150 rlpA; rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RVIR1_00450 ampD; N-acetylmuramoyl-L-alanine amidase AmiD K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rvi01004]
D RVIR1_07520 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RVIR1_07490 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RVIR1_07550 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RVIR1_03240 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RVIR1_07530 fabG; 3-ketoacyl-(Acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RVIR1_08580 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RVIR1_04380 fabI; enoyl-[acyl-carrier-protein] reductase [NADH] K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RVIR1_11840 xerD; thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D RVIR1_08220 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RVIR1_04990 fadD; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RVIR1_07480 plsX; phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D RVIR1_10640 plsY; glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
C 01008 Polyketide biosynthesis proteins [BR:rvi01008]
C 01006 Prenyltransferases [BR:rvi01006]
D RVIR1_13820 ispA; farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D RVIR1_04440 ispB; farnesyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RVIR1_08640 uppS; ditrans polycis-undecaprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RVIR1_04040 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RVIR1_07440 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:rvi01007]
D RVIR1_06240 gltX; glutamate--tRNA ligase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RVIR1_06520 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D RVIR1_01450 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RVIR1_01200 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RVIR1_06530 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RVIR1_01390 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RVIR1_00960 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RVIR1_13740 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RVIR1_12460 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RVIR1_04250 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RVIR1_08200 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RVIR1_08100 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RVIR1_02040 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RVIR1_00070 glyQS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RVIR1_10520 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RVIR1_08140 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RVIR1_04870 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RVIR1_03270 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RVIR1_07200 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RVIR1_07210 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RVIR1_04840 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RVIR1_02120 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RVIR1_14590 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D RVIR1_11280 rocD; acetylornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D RVIR1_14040 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RVIR1_14640 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D RVIR1_13880 hemL; glutamate-1-semialdehyde 2 1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rvi00194]
D RVIR1_00420 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RVIR1_00410 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RVIR1_00400 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RVIR1_00390 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RVIR1_00380 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RVIR1_00370 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RVIR1_00360 atpE; ATP synthase C chain K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RVIR1_00350 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RVIR1_00340 ATP synthase I chain K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rvi03000]
D RVIR1_08430 oxyR; transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D RVIR1_01770 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RVIR1_00160 birA; biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RVIR1_04770 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RVIR1_03170 putative DNA-binding protein K07726 K07726; putative transcriptional regulator
D RVIR1_09600 putA; putative bifunctional PutA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RVIR1_06210 morphogene BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RVIR1_03740 parB; chromosome segregation protein Spo0J contains ParB-like nuclease domain K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RVIR1_06650 tenA; thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RVIR1_01940 gcvR; amino acid-binding ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor
D RVIR1_03000 transcriptional regulator protein UPF0301 K07735 algH; putative transcriptional regulator
D RVIR1_09330 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D RVIR1_04120 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D RVIR1_05660 mraZ; cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rvi03021]
D RVIR1_10820 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RVIR1_11150 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RVIR1_11140 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RVIR1_13570 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RVIR1_03660 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RVIR1_14670 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D RVIR1_09960 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D RVIR1_10720 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D RVIR1_04130 nusB; N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
D RVIR1_11210 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RVIR1_02690 sspA; K03599 stringent starvation protein A K03599 sspA; stringent starvation protein A
D RVIR1_02680 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B
D RVIR1_09330 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D RVIR1_11620 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D RVIR1_12890 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rvi03019]
D RVIR1_06450 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RVIR1_05850 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RVIR1_07000 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RVIR1_10650 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RVIR1_09140 rhlE-2; DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D RVIR1_04290 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RVIR1_01620 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RVIR1_12890 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RVIR1_11600 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RVIR1_11930 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RVIR1_05510 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D RVIR1_11310 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D RVIR1_00220 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RVIR1_03290 csrA; carbon storage regulator homolog K03563 csrA; carbon storage regulator
C 03041 Spliceosome
C 03011 Ribosome [BR:rvi03011]
D RVIR1_07750 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RVIR1_08680 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RVIR1_11010 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RVIR1_10830 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RVIR1_10900 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RVIR1_04450 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RVIR1_11110 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RVIR1_10930 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RVIR1_02700 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RVIR1_11080 rpsJ; 30S ibosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RVIR1_10840 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RVIR1_11120 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RVIR1_10850 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RVIR1_10940 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RVIR1_01610 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RVIR1_12190 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RVIR1_10980 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RVIR1_04460 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RVIR1_11030 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RVIR1_13900 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RVIR1_10610 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RVIR1_11190 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RVIR1_11040 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RVIR1_11070 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RVIR1_11060 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RVIR1_10950 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RVIR1_10920 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RVIR1_04480 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RVIR1_11170 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RVIR1_11200 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RVIR1_11160 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RVIR1_02710 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RVIR1_10970 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RVIR1_10880 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RVIR1_11000 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RVIR1_10810 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RVIR1_10910 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RVIR1_12220 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RVIR1_04900 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RVIR1_08820 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RVIR1_11020 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RVIR1_11050 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RVIR1_10960 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RVIR1_08810 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RVIR1_08170 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RVIR1_10990 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RVIR1_10890 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RVIR1_04820 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RVIR1_07470 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RVIR1_08180 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RVIR1_14840 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RVIR1_04890 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RVIR1_10860 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RVIR1_06900 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
C 03009 Ribosome biogenesis [BR:rvi03009]
D RVIR1_05850 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RVIR1_10650 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RVIR1_05860 era; GTPase Era K03595 era; GTPase
D RVIR1_08800 obgE; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
D RVIR1_09330 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D RVIR1_10720 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D RVIR1_04130 nusB; N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
D RVIR1_11210 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RVIR1_01010 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RVIR1_01360 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RVIR1_09250 rsmD; N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RVIR1_06990 rsmE; ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RVIR1_13120 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RVIR1_05670 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RVIR1_01460 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RVIR1_02100 rsmJ; ribosomal RNA small subunit methyltransferase J K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D RVIR1_07010 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RVIR1_02950 rlmE; ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D RVIR1_04200 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D RVIR1_02020 rlmN; dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RVIR1_06710 rluB; pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RVIR1_12320 rluC; pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D RVIR1_12120 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RVIR1_02660 rimK; ribosomal protein S6 modification protein 1 K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D RVIR1_12200 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D RVIR1_09490 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D RVIR1_10780 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D RVIR1_06450 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RVIR1_03010 yneN; putative holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RVIR1_02070 der; GTPase Der K03977 engA; GTPase
D RVIR1_05500 hflX; GTPase HflX K03665 hflX; GTPase
D RVIR1_12920 sua5; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RVIR1_13580 spoT; guanosine-3' 5'-bis(Diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RVIR1_10700 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D RVIR1_10730 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D RVIR1_04210 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
D RVIR1_05110 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
D RVIR1_14250 yggX; sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
D RVIR1_06880 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:rvi03016]
D RVIR1_01060 cca; multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D RVIR1_06240 gltX; glutamate--tRNA ligase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RVIR1_08140 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RVIR1_13740 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RVIR1_04250 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RVIR1_00960 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RVIR1_01390 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RVIR1_08200 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RVIR1_08100 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RVIR1_03270 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RVIR1_00070 glyQS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RVIR1_04870 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RVIR1_10520 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RVIR1_06530 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RVIR1_12460 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RVIR1_02040 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RVIR1_07200 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RVIR1_07210 pheT; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RVIR1_01450 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RVIR1_01200 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RVIR1_12420 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RVIR1_03400 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D RVIR1_07910 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RVIR1_10690 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RVIR1_12920 sua5; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RVIR1_04040 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RVIR1_14810 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RVIR1_13430 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RVIR1_02840 cysQ1; 3'(2') 5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RVIR1_14830 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RVIR1_13000 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RVIR1_04100 yigN; putative ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D RVIR1_06520 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D RVIR1_07060 tadA; cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RVIR1_09880 yjbN; tRNA-dihydrouridine synthase K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D RVIR1_05130 miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RVIR1_12210 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RVIR1_12750 yeeA; RNA methyltransferase TrmH family group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D RVIR1_14060 tRNA methyl transferase-like protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RVIR1_12940 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RVIR1_14070 tRNA 5-methylaminomethyl-2-thiouridine synthase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D RVIR1_14510 tusE; sulfurtransferase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D RVIR1_03530 ygfZ; tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D RVIR1_12800 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RVIR1_12740 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RVIR1_13460 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RVIR1_07180 ydfM; peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RVIR1_04090 yijK; ATPase YjeE family K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RVIR1_07000 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D RVIR1_01620 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rvi03012]
D RVIR1_10710 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RVIR1_04880 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RVIR1_08670 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D RVIR1_11090 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RVIR1_11100 fusA; elongation factor G 2 K02355 fusA; elongation factor G
D RVIR1_09370 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D RVIR1_08650 frr; ribosome-recycling factor K02838 frr; ribosome recycling factor
D RVIR1_09350 prmC; release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RVIR1_06890 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RVIR1_03860 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RVIR1_10660 efp; elongation factor P K02356 efp; elongation factor P
D RVIR1_09290 epmA; lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D RVIR1_05710 lysine 2 3-aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D RVIR1_08210 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D RVIR1_04960 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:rvi03110]
D RVIR1_03870 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D RVIR1_14300 clpB; protein disaggregation chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RVIR1_02760 clpX; ATP-dependent Clp protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RVIR1_01420 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D RVIR1_00670 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RVIR1_11600 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RVIR1_11930 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RVIR1_11610 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RVIR1_13350 djlA; DnaJ-like protein DjlA K05801 djlA; DnaJ like chaperone protein
D RVIR1_11590 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D RVIR1_08980 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D RVIR1_13500 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D RVIR1_11920 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D RVIR1_13940 htrA; periplasmic serine protease Do heat shock protein HtrA K04771 degP; serine protease Do [EC:3.4.21.107]
D RVIR1_02940 ftsH; ATP-dependent zinc metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RVIR1_00350 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RVIR1_03570 putative pili assembly chaperone transmembrane protein K07346 fimC; fimbrial chaperone protein
D RVIR1_00810 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RVIR1_02810 ppiD; peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D RVIR1_13440 mip; peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D RVIR1_13390 surA; chaperone SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D RVIR1_12880 trxA; thioredoxin K03671 TXN; thioredoxin
D RVIR1_00800 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D RVIR1_14020 ydhD; glutaredoxin K07390 grxD; monothiol glutaredoxin
D RVIR1_00490 dsbA; thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D RVIR1_03210 dsbB; disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D RVIR1_04780 dsbD; thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:rvi04131]
D RVIR1_02010 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RVIR1_00320 fbaB; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RVIR1_13560 gap; glyceraldehyde-3-phosphate dehydrogenase type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RVIR1_01760 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RVIR1_00670 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:rvi03051]
D RVIR1_00670 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:rvi03032]
D RVIR1_11730 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RVIR1_02780 hupB; nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RVIR1_07220 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RVIR1_08790 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RVIR1_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RVIR1_04490 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RVIR1_10590 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RVIR1_07350 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RVIR1_11780 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RVIR1_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RVIR1_12450 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RVIR1_04230 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RVIR1_07580 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RVIR1_12480 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RVIR1_04940 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RVIR1_08550 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RVIR1_05530 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RVIR1_05020 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RVIR1_02080 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RVIR1_08770 hda; DnaA family protein K10763 hda; DnaA-homolog protein
D RVIR1_06470 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RVIR1_03250 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RVIR1_04800 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RVIR1_00870 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RVIR1_12390 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rvi03036]
D RVIR1_05850 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RVIR1_00320 fbaB; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RVIR1_02780 hupB; nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RVIR1_07220 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RVIR1_08790 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RVIR1_00010 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RVIR1_14100 hspQ; hemimethylated DNA-binding region K11940 hspQ; heat shock protein HspQ
D RVIR1_02890 dps; ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein
D RVIR1_04770 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RVIR1_05510 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D RVIR1_05040 smc; chromosome partition protein Smc K03529 smc; chromosome segregation protein
D RVIR1_03910 scpA; segregation and condensation protein K05896 scpA; segregation and condensation protein A
D RVIR1_11760 ftsA; cell division protein ftsA K03590 ftsA; cell division protein FtsA
D RVIR1_04300 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB
D RVIR1_05690 ftsI; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RVIR1_02860 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RVIR1_05680 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D RVIR1_11770 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D RVIR1_12960 ftsW; lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D RVIR1_11750 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RVIR1_05030 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA
D RVIR1_10090 yhbH; AFG1-family ATPase K06916 zapE; cell division protein ZapE
D RVIR1_13050 putative HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_11480 related to multidrug-efflux transport protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_04980 minC; probable septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D RVIR1_11860 minD; site-determining protein K03609 minD; septum site-determining protein MinD
D RVIR1_11850 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D RVIR1_05180 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D RVIR1_05190 mreC; cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D RVIR1_05200 mreD; Rod shape-determining transmembrane protein K03571 mreD; rod shape-determining protein MreD
D RVIR1_10130 rodA; Rod shape determining protein RodA K05837 rodA; rod shape determining protein RodA
D RVIR1_03750 parA; chromosome partition protein K03496 parA; chromosome partitioning protein
D RVIR1_03740 parB; chromosome segregation protein Spo0J contains ParB-like nuclease domain K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RVIR1_04800 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RVIR1_00870 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RVIR1_13430 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RVIR1_13120 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RVIR1_00980 mrp; ATPase-like ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RVIR1_14130 engB; probable GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:rvi03400]
D RVIR1_12230 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RVIR1_13310 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RVIR1_03960 mutY; A / G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RVIR1_01590 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RVIR1_05070 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RVIR1_14720 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RVIR1_11800 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RVIR1_03830 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RVIR1_14090 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RVIR1_09900 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RVIR1_05020 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RVIR1_05530 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RVIR1_07360 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D RVIR1_12610 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RVIR1_11150 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RVIR1_11140 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RVIR1_10820 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RVIR1_13570 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RVIR1_01180 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RVIR1_04050 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D RVIR1_12380 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RVIR1_13830 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RVIR1_11780 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RVIR1_00020 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RVIR1_12450 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RVIR1_04230 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RVIR1_07580 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RVIR1_12480 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RVIR1_04940 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RVIR1_07350 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RVIR1_02080 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RVIR1_00280 recA; recombinase A K03553 recA; recombination protein RecA
D RVIR1_08050 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RVIR1_08010 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RVIR1_08060 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RVIR1_13660 priA; primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RVIR1_04630 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
D RVIR1_00030 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RVIR1_09520 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RVIR1_11870 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RVIR1_04920 recR; recombination protein RecR K06187 recR; recombination protein RecR
D RVIR1_06610 addA; UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D RVIR1_06620 lidB; uncharacterized protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D RVIR1_06470 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RVIR1_03250 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RVIR1_12390 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RVIR1_02780 hupB; nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D RVIR1_04770 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D RVIR1_07220 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
D RVIR1_08790 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
D RVIR1_00270 recX; regulatory protein RecX K03565 recX; regulatory protein
D RVIR1_03810 nrdA; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RVIR1_03800 nrdB; ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rvi03029]
D RVIR1_10710 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RVIR1_04880 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RVIR1_08670 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D RVIR1_11090 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RVIR1_11100 fusA; elongation factor G 2 K02355 fusA; elongation factor G
D RVIR1_05860 era; GTPase Era K03595 era; GTPase
D RVIR1_01450 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RVIR1_04250 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RVIR1_08100 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RVIR1_00070 glyQS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RVIR1_01390 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RVIR1_05160 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RVIR1_05150 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RVIR1_05170 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RVIR1_07350 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RVIR1_08610 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D RVIR1_11600 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RVIR1_11590 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D RVIR1_11930 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RVIR1_11920 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D RVIR1_11610 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RVIR1_14020 ydhD; glutaredoxin K07390 grxD; monothiol glutaredoxin
D RVIR1_00980 mrp; ATPase-like ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RVIR1_14820 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RVIR1_12930 uncharacterized protein K07152 SCO1; protein SCO1
D RVIR1_00670 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rvi02000]
D RVIR1_05280 msbA; phospholipid-lipopolysaccharide ABC transporter K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RVIR1_07840 potD; putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RVIR1_07850 potC; spermidine putrescine ABC transporter permease component potC K11070 potC; spermidine/putrescine transport system permease protein
D RVIR1_07860 potB; spermidine/putrescine ABC transporter membrane protein K11071 potB; spermidine/putrescine transport system permease protein
D RVIR1_07870 potA; spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RVIR1_12600 thiY; ABC transporter periplasmic substrate-binding component K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D RVIR1_12590 ABC transporter permease K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D RVIR1_14180 ABC transporter permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RVIR1_14190 tauB; ABC transporter ATP binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RVIR1_00520 mlaD; substrate binding protein of phospholipid ABC transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RVIR1_09430 ABC transport system periplasmic substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RVIR1_00510 mlaE; integral membrane protein of phospholipid ABC transporter K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RVIR1_00500 mlaF; ATP binding component of phospholipid ABC transporter K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RVIR1_09420 yraP; ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RVIR1_09440 ABC transporter K18480 linN; cholesterol transport system auxiliary component
D RVIR1_00530 mlaC; periplasmic binding protein of phospholipid ABC transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D RVIR1_00540 mlaB; phospholipid ABC transporter - MlaB subunit K07122 mlaB; phospholipid transport system transporter-binding protein
D RVIR1_07620 metQ; D-methionine transport system substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RVIR1_07630 metI; D-methionine transport system permease protein K02072 metI; D-methionine transport system permease protein
D RVIR1_07640 metN; D-methionine transport system ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D RVIR1_03760 ytfM; periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D RVIR1_03780 znuA; putative ABC transporter permease component K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D RVIR1_03770 znuB; ABC Mn2+/Zn2+ transporter ATPase subunit K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D RVIR1_05350 rfbD; lipopolysaccharide transport system permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D RVIR1_05360 rfbE; ABC transporter related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RVIR1_12060 lptF; Lipopolysaccharide export system permease protein K07091 lptF; lipopolysaccharide export system permease protein
D RVIR1_12070 lptG; Lipopolysaccharide export system permease protein K11720 lptG; lipopolysaccharide export system permease protein
D RVIR1_14240 lptB; lipopolysaccharide export system ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RVIR1_04370 lolC; outer membrane-specific lipoprotein transporter subunit membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D RVIR1_04360 lolD; lipoprotein releasing system ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RVIR1_10070 antibiotic transport system permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D RVIR1_05950 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D RVIR1_10180 putative efflux protein MATE family K26939 norM; MATE family, multidrug efflux pump
D RVIR1_04030 general substrate transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RVIR1_11900 ampG; Na+/melibiose symporter or related transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RVIR1_02160 transporter major facilitator family K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D RVIR1_00230 ptsP; phosphoenolpyruvate protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D RVIR1_00760 phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D RVIR1_07670 gst; glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RVIR1_02690 sspA; K03599 stringent starvation protein A K03599 sspA; stringent starvation protein A
D RVIR1_14520 yccA; inner membrane protein yccA K19416 yccA; modulator of FtsH protease
D RVIR1_01480 small-conductance mechanosensitive channel K05802 mscK; potassium-dependent mechanosensitive channel
D RVIR1_13920 ynaI; putative small-conductance mechanosensitive channel K16052 ynaI; MscS family membrane protein
D RVIR1_08000 tolQ; TolQ K03562 tolQ; biopolymer transport protein TolQ
D RVIR1_07990 tolR; membrane spanning protein in TolA-TolQ-TolR complex K03560 tolR; biopolymer transport protein TolR
D RVIR1_12160 corB; magnesium and cobalt efflux protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RVIR1_07380 OmpA-like transmembrane domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RVIR1_07390 OmpA-like transmembrane domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RVIR1_07420 outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RVIR1_07430 ompA; OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D RVIR1_03580 fimD; putative outer membrane usher transmembrane protein K07347 fimD; outer membrane usher protein
D RVIR1_00850 tolC; putative type I secretion outer membrane efflux TolC protein K12340 tolC; outer membrane protein
D RVIR1_08610 bamA; outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family
D RVIR1_02060 bamB; outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D RVIR1_01780 bamE; outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D RVIR1_01520 yrdA; surface antigen D15 K07278 tamA; translocation and assembly module TamA
D RVIR1_01510 putative periplasmic protein K09800 tamB; translocation and assembly module TamB
D RVIR1_03610 probable adhesin K21449 ata; trimeric autotransporter adhesin
D RVIR1_14230 lptA; component of the Lpt lipopolysaccharide transport system K09774 lptA; lipopolysaccharide export system protein LptA
D RVIR1_14220 lptC; component of the Lpt lipopolysaccharide transport system K11719 lptC; lipopolysaccharide export system protein LptC
D RVIR1_13380 lptD; LPS-assembly protein LptD K04744 lptD; LPS-assembly protein
D RVIR1_04240 rlpB; lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D RVIR1_05100 corC; Mg2+/Co2+ transporter K06189 corC; hemolysin (HlyC) family protein
D RVIR1_13710 gadC; putative amino acid antiporter K20265 gadC; glutamate:GABA antiporter
D RVIR1_14550 czcD; cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D RVIR1_13040 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D RVIR1_11490 hydrophobic/amphiphilic exporter-1 K18138 acrB; multidrug efflux pump
D RVIR1_00040 sugE; small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D RVIR1_12490 nhaA; Na(+)/H(+) antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D RVIR1_11300 kef; cation:proton antiporter K26735 KEA4_5_6; K+:H+ antiporter
D RVIR1_08190 xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D RVIR1_13530 tyrP; putative tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D RVIR1_13540 tyrP; tryptophan/tyrosine permease K03834 tyrP; tyrosine-specific transport protein
D RVIR1_00740 tyrP; tryptophan/tyrosine permease K03834 tyrP; tyrosine-specific transport protein
D RVIR1_03020 mviN; virulence factor mviN K03980 murJ; putative peptidoglycan lipid II flippase
D RVIR1_01960 perM; membrane protein PerM family K03548 perM; putative permease
D RVIR1_14660 uncharacterized protein K09125 yhhQ; queuosine precursor transporter
D RVIR1_00700 uncharacterized protein K09125 yhhQ; queuosine precursor transporter
D RVIR1_12960 ftsW; lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D RVIR1_07930 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D RVIR1_05650 WD-40 repeat protein K03646 tolA; colicin import membrane protein
D RVIR1_07980 tolA; TolA colicin import membrane protein K03646 tolA; colicin import membrane protein
D RVIR1_07940 tolB; protein TolB K03641 tolB; TolB protein
D RVIR1_13050 putative HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_11480 related to multidrug-efflux transport protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_09800 FeoA family protein K04758 feoA; ferrous iron transport protein A
D RVIR1_09810 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
C 02044 Secretion system [BR:rvi02044]
D RVIR1_00850 tolC; putative type I secretion outer membrane efflux TolC protein K12340 tolC; outer membrane protein
D RVIR1_03160 pilD; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RVIR1_13750 pilA; pilus assembly protein PilA K02650 pilA; type IV pilus assembly protein PilA
D RVIR1_03140 pilB; type IV-A pilus assembly ATPase K02652 pilB; type IV pilus assembly protein PilB
D RVIR1_03150 pilC; type 4 fimbrial assembly protein K02653 pilC; type IV pilus assembly protein PilC
D RVIR1_14320 pilE; TppA K02655 pilE; type IV pilus assembly protein PilE
D RVIR1_02030 pilF; type IV pilus biogenesis protein PilF K02656 pilF; type IV pilus assembly protein PilF
D RVIR1_12540 pilM; type IV fimbrial biogenesis protein K02662 pilM; type IV pilus assembly protein PilM
D RVIR1_12030 pilV; methylation K02671 pilV; type IV pilus assembly protein PilV
D RVIR1_12020 pilW; prepilin-type N-cleavage/methylation domain protein K02672 pilW; type IV pilus assembly protein PilW
D RVIR1_12000 pilX; uncharacterized protein K02673 pilX; type IV pilus assembly protein PilX
D RVIR1_03220 ygfA; integral membrane protein K02221 yggT; YggT family protein
D RVIR1_00310 DNA uptake protein K02237 comEA; competence protein ComEA
D RVIR1_12240 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D RVIR1_10310 plasmid conjugal transfer protein TrbD/VirB3 K03198 virB3; type IV secretion system protein VirB3
D RVIR1_02410 virB3; type IV secretory systen protein VirB3 K03198 virB3; type IV secretion system protein VirB3
D RVIR1_10320 virB4; type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RVIR1_02420 virB4; type IV secretion system protein VirB4 K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RVIR1_10330 Legionella vir homologue protein B5 K03200 virB5; type IV secretion system protein VirB5
D RVIR1_02430 type IV secretory systen protein VirB5 K03200 virB5; type IV secretion system protein VirB5
D RVIR1_10360 virB6; Legionella vir homologue protein K03201 virB6; type IV secretion system protein VirB6
D RVIR1_02460 virB6; type IV secretory systen protein VirB6 K03201 virB6; type IV secretion system protein VirB6
D RVIR1_10390 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D RVIR1_02490 virB10; type IV secretion system protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D RVIR1_10400 virB11; type IV secretion system protein VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RVIR1_02500 virB11; type IV secretion system protein VirB11 K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RVIR1_09280 dotB; ATP-binding protein K12203 dotB; defect in organelle trafficking protein DotB [EC:7.2.4.8]
D RVIR1_09270 dotC; DotC K12204 dotC; defect in organelle trafficking protein DotC
D RVIR1_09260 dotD; component of the Dot/Icm secretion system. lipoprotein K12205 dotD; defect in organelle trafficking protein DotD
D RVIR1_06170 icmB; Dot/Icm secretion system protein IcmB K12206 icmB; intracellular multiplication protein IcmB [EC:7.2.4.8]
D RVIR1_06140 icmD; Dot/Icm secretion system protein IcmD K12208 icmD; intracellular multiplication protein IcmD
D RVIR1_06110 icmE; component of the Dot/Icm secretion system. Major component of a channel K12209 icmE; intracellular multiplication protein IcmE
D RVIR1_06160 icmJ; Dot/Icm secretion system protein IcmJ K12212 icmJ; intracellular multiplication protein IcmJ
D RVIR1_06100 icmK; Dot/Icm secretion system protein IcmK K12213 icmK; intracellular multiplication protein IcmK
D RVIR1_06090 icmL; Dot/Icm secretion system protein IcmL K12214 icmL; intracellular multiplication protein IcmL
D RVIR1_06060 icmO; Dot/Icm secretion system protein IcmO K12217 icmO; intracellular multiplication protein IcmO [EC:7.2.4.8]
D RVIR1_06050 icmP; component of Dot/Icm secretion system. ATPase component K12218 icmP; intracellular multiplication protein IcmP
D RVIR1_06040 icmQ; Dot/Icm secretion system protein K12219 icmQ; intracellular multiplication protein IcmQ
D RVIR1_09620 icmT; Dot/Icm secretion system protein IcmT K12222 icmT; intracellular multiplication protein IcmT
D RVIR1_11400 icmV; intracellular multiplication protein IcmV K12223 icmV; intracellular multiplication protein IcmV
D RVIR1_11410 icmW; component of the Dot/Icm secretion system K12224 icmW; intracellular multiplication protein IcmW
D RVIR1_03570 putative pili assembly chaperone transmembrane protein K07346 fimC; fimbrial chaperone protein
D RVIR1_03580 fimD; putative outer membrane usher transmembrane protein K07347 fimD; outer membrane usher protein
D RVIR1_03550 protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RVIR1_03560 spore coat protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RVIR1_03590 putative secreted pili protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RVIR1_11460 secA; protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RVIR1_00810 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RVIR1_12780 secD; protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RVIR1_11220 secE; protein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RVIR1_12770 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D RVIR1_11540 secG; putative preprotein translocase SecG Subunit K03075 secG; preprotein translocase subunit SecG
D RVIR1_10870 secY; protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RVIR1_12180 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RVIR1_09240 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D RVIR1_12790 yajC; protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D RVIR1_14820 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:rvi02042]
D RVIR1_12160 corB; magnesium and cobalt efflux protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:rvi02022]
D RVIR1_05000 qseC; sensory histidine kinase in two-component regulatory system with QseB K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D RVIR1_05010 qseB; transcriptional regulatory protein K07666 qseB; two-component system, OmpR family, response regulator QseB
D RVIR1_08910 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_09680 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_09720 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_04690 putative sensory histidine-kinase / response regulator K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D RVIR1_07080 sirA; GacA-like protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D RVIR1_04970 signal transduction histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:rvi02035]
D RVIR1_13750 pilA; pilus assembly protein PilA K02650 pilA; type IV pilus assembly protein PilA
D RVIR1_03140 pilB; type IV-A pilus assembly ATPase K02652 pilB; type IV pilus assembly protein PilB
D RVIR1_03150 pilC; type 4 fimbrial assembly protein K02653 pilC; type IV pilus assembly protein PilC
D RVIR1_03160 pilD; type 4 prepilin-like proteins leader peptide-processing enzyme K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RVIR1_02030 pilF; type IV pilus biogenesis protein PilF K02656 pilF; type IV pilus assembly protein PilF
D RVIR1_12540 pilM; type IV fimbrial biogenesis protein K02662 pilM; type IV pilus assembly protein PilM
D RVIR1_12030 pilV; methylation K02671 pilV; type IV pilus assembly protein PilV
D RVIR1_12020 pilW; prepilin-type N-cleavage/methylation domain protein K02672 pilW; type IV pilus assembly protein PilW
D RVIR1_12000 pilX; uncharacterized protein K02673 pilX; type IV pilus assembly protein PilX
D RVIR1_14320 pilE; TppA K02655 pilE; type IV pilus assembly protein PilE
D RVIR1_03570 putative pili assembly chaperone transmembrane protein K07346 fimC; fimbrial chaperone protein
D RVIR1_03580 fimD; putative outer membrane usher transmembrane protein K07347 fimD; outer membrane usher protein
D RVIR1_03550 protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RVIR1_03560 spore coat protein U K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D RVIR1_03590 putative secreted pili protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rvi04812]
D RVIR1_05180 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D RVIR1_11750 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RVIR1_11760 ftsA; cell division protein ftsA K03590 ftsA; cell division protein FtsA
D RVIR1_04980 minC; probable septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D RVIR1_11860 minD; site-determining protein K03609 minD; septum site-determining protein MinD
D RVIR1_11850 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D RVIR1_03750 parA; chromosome partition protein K03496 parA; chromosome partitioning protein
D RVIR1_03740 parB; chromosome segregation protein Spo0J contains ParB-like nuclease domain K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rvi04147]
D RVIR1_00670 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RVIR1_00320 fbaB; fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RVIR1_04290 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RVIR1_13560 gap; glyceraldehyde-3-phosphate dehydrogenase type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RVIR1_01750 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RVIR1_01760 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RVIR1_11930 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RVIR1_11600 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RVIR1_11320 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RVIR1_01990 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RVIR1_11090 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RVIR1_12420 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RVIR1_04990 fadD; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D RVIR1_11980 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RVIR1_14440 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RVIR1_12330 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RVIR1_14050 metB; cystathionine gamma-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1]
D RVIR1_02720 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RVIR1_09540 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RVIR1_11550 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:rvi02048]
D RVIR1_02080 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D RVIR1_11750 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RVIR1_05180 mreB; Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D RVIR1_04800 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RVIR1_00870 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RVIR1_06240 gltX; glutamate--tRNA ligase 1 K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RVIR1_05580 putative lipoprotein K19168 cptA; toxin CptA
D RVIR1_05570 response regulator receiver domain protein K09159 cptB; antitoxin CptB
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rvi01504]
D RVIR1_01830 aminoglycoside/hydroxyurea antibiotic resistance kinase K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D RVIR1_08890 aminoglycoside/hydroxyurea antibiotic resistance kinase K04343 strB; streptomycin 6-kinase [EC:2.7.1.72]
D RVIR1_12660 D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D RVIR1_13050 putative HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_11480 related to multidrug-efflux transport protein A K03585 acrA; membrane fusion protein, multidrug efflux system
D RVIR1_13040 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D RVIR1_11490 hydrophobic/amphiphilic exporter-1 K18138 acrB; multidrug efflux pump
D RVIR1_00850 tolC; putative type I secretion outer membrane efflux TolC protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rvi03100]
D RVIR1_06290 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RVIR1_02620 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RVIR1_13130 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RVIR1_03310 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RVIR1_03490 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RVIR1_08830 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RVIR1_02800 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RVIR1_07140 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RVIR1_06960 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RVIR1_00910 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RVIR1_11250 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RVIR1_07130 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RVIR1_02610 tRNA-His K14226 tRNA-His; tRNA His
D RVIR1_08510 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RVIR1_12840 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RVIR1_02730 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_07150 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_02980 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_01640 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_11530 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RVIR1_02600 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RVIR1_10500 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RVIR1_03650 tRNA-Met K14230 tRNA-Met; tRNA Met
D RVIR1_04740 tRNA-Met K14230 tRNA-Met; tRNA Met
D RVIR1_10740 tRNA-Met K14230 tRNA-Met; tRNA Met
D RVIR1_09650 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RVIR1_02630 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RVIR1_07240 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RVIR1_04420 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RVIR1_04950 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RVIR1_03300 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RVIR1_01290 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RVIR1_07070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RVIR1_00150 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RVIR1_13770 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RVIR1_11240 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RVIR1_11230 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RVIR1_11260 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RVIR1_02790 tRNA-Val K14237 tRNA-Val; tRNA Val
D RVIR1_04860 tRNA-Val K14237 tRNA-Val; tRNA Val
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RVIR1_00240 FAD linked oxidase domain protein K16653 dprE1; decaprenylphospho-beta-D-ribofuranose 2-oxidase [EC:1.1.98.3]
D RVIR1_00560 pqqC; coenzyme PQQ synthesis protein C K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D RVIR1_01950 bcp; putative peroxiredoxin Bcp (thioredoxin reductase) K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RVIR1_08410 ahpD; alkyl hydroperoxide reductase AhpD K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28]
D RVIR1_08420 ahpC; alkyl hydroperoxide reductase peroxiredoxin K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]
D RVIR1_13810 ahpC; alkylhydroperoxide reductase C K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]
D RVIR1_00210 cfa; cyclopropane fatty acyl phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D RVIR1_04260 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RVIR1_13600 deoxyhypusine synthase-like protein K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46]
D RVIR1_10170 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RVIR1_14110 sixA; putative phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D RVIR1_07590 tatD; DNase TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RVIR1_01340 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RVIR1_09980 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D RVIR1_03100 mpl; UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl-m es o-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D RVIR1_00950 rnfB; Predicted NADH:ubiquinone oxidoreductase-subunit RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D RVIR1_07170 fdxA; putative ferredoxin K05524 fdxA; ferredoxin
D RVIR1_05930 nifU; SUF system FeS assembly protein NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D RVIR1_00080 alanine racemase domain protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D RVIR1_07740 uncharacterized protein K08992 lapA; lipopolysaccharide assembly protein A
D RVIR1_07730 tetratricopeptide repeat family protein K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D RVIR1_01720 hemY; HemY domain protein K02498 hemY; HemY protein
D RVIR1_14360 ubiB; probable protein kinase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D RVIR1_14370 ubiquinone biosynthesis protein UbiJ contains SCP2 domain K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D RVIR1_00190 uncharacterized protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
C 99999 Others
D RVIR1_05820 carboxylesterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
C 99974 Translation
C 99975 Protein processing
D RVIR1_02740 tig; trigger factor K03545 tig; trigger factor
D RVIR1_01810 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D RVIR1_00180 comM; ComM-like protein K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D RVIR1_08160 radC; UPF0758 protein Noc_0236 K03630 radC; DNA repair protein RadC
D RVIR1_07290 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D RVIR1_10010 endonuclease III K07457 K07457; endonuclease III related protein
D RVIR1_12640 UPF0102 protein Nwat_2748 K07460 yraN; putative endonuclease
D RVIR1_07370 endo/excinuclease amino terminal domain protein K07461 K07461; putative endonuclease
D RVIR1_12400 smf; SMF protein K04096 smf; DNA processing protein
D RVIR1_01900 terminase small subunit K07474 xtmA; phage terminase small subunit
D RVIR1_09660 terminase small subunit K07474 xtmA; phage terminase small subunit
D RVIR1_02650 putative ATPase K07478 ycaJ; putative ATPase
D RVIR1_12340 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB K07501 K07501; 3'-5' exonuclease
C 99979 Viral proteins
C 99998 Others
D RVIR1_04930 ybaB; nucleoid-associated protein Entcl_3319 K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RVIR1_01470 arginine/agmatine antiporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RVIR1_12250 pit; low affinity inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
C 99978 Cell growth
D RVIR1_06220 ispZ; probable intracellular septation protein A K06190 ispZ; intracellular septation protein
C 99993 Cell motility
C 99995 Signaling proteins
D RVIR1_09580 ampE; transmembrane protein K03807 ampE; AmpE protein
D RVIR1_07270 ugpQ; universal stress protein K06149 uspA; universal stress protein A
D RVIR1_14410 typA; GTP-binding protein K06207 typA; GTP-binding protein
D RVIR1_05120 phoH; phosphate starvation-inducible protein PhoH predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D RVIR1_14560 lolA; outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D RVIR1_06980 lolB; Outer membrane lipoprotein K02494 lolB; outer membrane lipoprotein LolB
D RVIR1_02880 vacJ; Surface lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D RVIR1_11880 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D RVIR1_05050 17 kda surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D RVIR1_08600 ompH; chaperone protein skp K06142 hlpA; outer membrane protein
D RVIR1_03970 uncharacterized protein K07289 asmA; AsmA protein
D RVIR1_05550 ccmE; cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
C 99994 Others
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RVIR1_06490 cvpA; colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D RVIR1_03370 chitinase class I family protein K03791 K03791; putative chitinase
D RVIR1_05590 erpA; putative iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D RVIR1_05960 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D RVIR1_09150 UPF0761 membrane protein rbn K07058 K07058; membrane protein
D RVIR1_00060 rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein
D RVIR1_09740 hflD; high frequency lysogenization protein HflD homolog K07153 hflD; high frequency lysogenization protein
D RVIR1_07780 sporulation domain protein K03749 dedD; DedD protein
C 99997 Function unknown
D RVIR1_10080 alpha/beta hydrolase K07018 K07018; uncharacterized protein
D RVIR1_00200 Uma3 K07028 K07028; uncharacterized protein
D RVIR1_12630 LppC lipofamily protein K07121 K07121; uncharacterized protein
D RVIR1_10600 lporfX; GatB/Yqey domain protein K09117 K09117; uncharacterized protein
D RVIR1_00110 uncharacterized protein K09137 K09137; uncharacterized protein
D RVIR1_00690 uncharacterized protein K09705 K09705; uncharacterized protein
D RVIR1_14730 hemolysin K09712 K09712; uncharacterized protein
D RVIR1_07280 uncharacterized protein K09779 K09779; uncharacterized protein
D RVIR1_07190 UPF0434 protein Metal_0981 K09791 K09791; uncharacterized protein
D RVIR1_01790 rnfH; protein RnfH K09801 K09801; uncharacterized protein
D RVIR1_05600 yggE; oxidative stress defense protein K09807 K09807; uncharacterized protein
D RVIR1_04550 YecA family protein K09895 K09895; uncharacterized protein
D RVIR1_05320 UPF0276 protein LLO_0755 K09930 K09930; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 8, 2024