+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Rhododendron vialii</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        131302523 DNA-directed RNA polymerase II subunit RPB1-like isoform X1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        131334500 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        131314560 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        131330226 DNA-directed RNA polymerase II subunit RPB2-like isoform X1	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        131308757 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        131326800 DNA-directed RNA polymerases II, IV and V subunit 3-like	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        131334332 DNA-directed RNA polymerases II, IV and V subunit 11	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        131335452 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        131313355 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        131316861 DNA-directed RNA polymerase II subunit 4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        131302425 DNA-directed RNA polymerase II subunit RPB7 isoform X1	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        131316799 DNA-directed RNA polymerase II subunit RPB7-like	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        131315928 DNA-directed RNA polymerases II, IV and V subunit 9A	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        131318632 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131306465 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131320774 DNA-directed RNA polymerases IV and V subunit 5B-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131310167 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131318860 DNA-directed RNA polymerases II and V subunit 6B-like isoform X1	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        131325410 DNA-directed RNA polymerases II and V subunit 6B-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        131299879 DNA-directed RNA polymerases II and V subunit 6B-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        131334204 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        131312820 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        131323468 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        131329538 DNA-directed RNA polymerases II, IV and V subunit 12-like	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        131319993 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        131314937 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
E        131331837 DNA-directed RNA polymerase IV subunit 1 isoform X1	K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] 
E        131312117 DNA-directed RNA polymerase V subunit 1	K16251 NRPE1; DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] 
E        131317810 DNA-directed RNA polymerases IV and V subunit 2	K16252 NRPD2; DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] 
E        131323990 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        131324180 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
E        131324185 DNA-directed RNA polymerase V subunit 7-like	K16253 NRPD7; DNA-directed RNA polymerase IV and V subunit 7 
C    Basal transcription factors
D      TFIIA
E        131314685 transcription initiation factor IIA large subunit-like isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        131316703 transcription initiation factor IIA large subunit-like	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        131316414 transcription initiation factor IIA subunit 2-like	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
E        131331984 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        131334056 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        131334059 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        131336708 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        131322850 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        131324418 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        131315366 TATA-box-binding protein 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        131302543 transcription initiation factor TFIID subunit 1-like isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        131327284 transcription initiation factor TFIID subunit 1 isoform X1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        131335735 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        131331322 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        131332308 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        131317836 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        131322958 transcription initiation factor TFIID subunit 6 isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        131329605 transcription initiation factor TFIID subunit 6-like isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        131299964 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        131315960 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        131304468 transcription initiation factor TFIID subunit 8-like	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        131321004 transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        131335805 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        131331940 transcription initiation factor TFIID subunit 10 isoform X1	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        131313336 transcription initiation factor TFIID subunit 11 isoform X1	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        131321404 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        131305671 transcription initiation factor TFIID subunit 13-like	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        131315026 transcription initiation factor TFIID subunit 13 isoform X1	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        131327568 LOW QUALITY PROTEIN: uncharacterized protein LOC131327568	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        131299917 transcription initiation factor IIE subunit alpha-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        131322801 uncharacterized protein LOC131322801	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
E        131332401 uncharacterized protein LOC131332401	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        131313362 transcription initiation factor IIF subunit alpha isoform X1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        131315206 transcription initiation factor IIF subunit alpha-like	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        131318748 uncharacterized protein LOC131318748 isoform X1	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
E        131330960 uncharacterized protein LOC131330960	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        131321898 general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        131336032 general transcription factor IIH subunit 2-like	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        131307555 general transcription and DNA repair factor IIH subunit TFB4 isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        131310186 general transcription and DNA repair factor IIH subunit TFB4-like isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        131303321 general transcription and DNA repair factor IIH subunit TFB2-like isoform X1	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        131314693 general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        131313528 general transcription and DNA repair factor IIH helicase subunit XPD	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        131315874 general transcription and DNA repair factor IIH subunit TFB5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        131331882 general transcription and DNA repair factor IIH subunit TFB5-like	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        131336493 cyclin-dependent kinase D-3	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        131303127 uncharacterized protein LOC131303127 isoform X1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        131320350 uncharacterized protein LOC131320350 isoform X1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        131326394 uncharacterized protein LOC131326394	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        131300033 uncharacterized protein LOC131300033 isoform X1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        131334034 cyclin-H1-1-like isoform X1	K06634 CCNH; cyclin H 
E        131326072 cyclin-H1-1 isoform X1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        131299263 mediator of RNA polymerase II transcription subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        131315214 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        131320221 mediator of RNA polymerase II transcription subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        131331099 mediator of RNA polymerase II transcription subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        131320030 mediator of RNA polymerase II transcription subunit 20a-like isoform X1	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        131302333 mediator of RNA polymerase II transcription subunit 22a-like	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        131301659 mediator of RNA polymerase II transcription subunit 28-like	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        131331308 mediator of RNA polymerase II transcription subunit 28-like	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
D      Middle
E        131324456 mediator of RNA polymerase II transcription subunit 7a-like isoform X1	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        131324460 mediator of RNA polymerase II transcription subunit 7a-like isoform X1	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        131334404 mediator of RNA polymerase II transcription subunit 10b-like	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        131316448 mediator of RNA polymerase II transcription subunit 10b-like	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        131313434 mediator of RNA polymerase II transcription subunit 21-like isoform X1	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        131297983 mediator of RNA polymerase II transcription subunit 21-like	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        131301761 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        131321975 mediator of RNA polymerase II transcription subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
D      CDK-module
E        131298463 cyclin-dependent kinase E-1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        131319938 cyclin-C1-2-like	K15161 CCNC; cyclin-C 
E        131320735 mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        131302026 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        131300834 mediator of RNA polymerase II transcription subunit 25 isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        131300799 mediator of RNA polymerase II transcription subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
E        131307900 mediator of RNA polymerase II transcription subunit 32	K27471 MED32; mediator of RNA polymerase II transcription subunit 32 
E        131318575 mediator of RNA polymerase II transcription subunit 33A isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        131321671 mediator of RNA polymerase II transcription subunit 33A isoform X1	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        131312667 mediator of RNA polymerase II transcription subunit 33A-like	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
E        131326204 mediator of RNA polymerase II transcription subunit 33A-like	K27472 MED33; mediator of RNA polymerase II transcription subunit 33 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        131322029 histone acetyltransferase GCN5	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        131313688 histone acetyltransferase GCN5-like isoform X1	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        131304313 transcription-associated protein 1-like	K08874 TRRAP; transformation/transcription domain-associated protein 
E        131323414 transcriptional adapter ADA2-like isoform X1	K11314 TADA2A; transcriptional adapter 2-alpha 
E        131316939 transcriptional adapter ADA2b	K11314 TADA2A; transcriptional adapter 2-alpha 
E        131335735 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        131331322 transcription initiation factor TFIID subunit 4b-like isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        131332308 transcription initiation factor TFIID subunit 4b isoform X1	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        131317836 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        131322958 transcription initiation factor TFIID subunit 6 isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        131329605 transcription initiation factor TFIID subunit 6-like isoform X1	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        131299964 transcription initiation factor TFIID subunit 7-like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        131315960 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        131335805 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        131331940 transcription initiation factor TFIID subunit 10 isoform X1	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        131321404 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        131314290 SAGA-associated factor 11 isoform X1	K11363 SGF11; SAGA-associated factor 11 
E        131304029 SAGA-associated factor 29 homolog A isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        131298814 SAGA-associated factor 29 homolog A-like	K11364 SGF29; SAGA-associated factor 29 
E        131314518 protein CHROMATIN REMODELING 5 isoform X1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        131304237 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        131299903 ubiquitin C-terminal hydrolase 22-like	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        131332197 ubiquitin C-terminal hydrolase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        131318827 uncharacterized protein LOC131318827 isoform X1	K12830 SF3B3; splicing factor 3B subunit 3 
E        131300520 spliceosome-associated protein 130 A	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        131334527 ATP-dependent helicase BRM isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        131314666 chromatin structure-remodeling complex protein BSH isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        131335200 SWI/SNF complex subunit SWI3A isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        131307910 SWI/SNF complex subunit SWI3D	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        131329086 SWI/SNF complex subunit SWI3C	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        131330787 SWI/SNF complex subunit SWI3B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        131303855 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        131311008 SWI/SNF complex component SNF12 homolog	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        131302462 actin-related protein 4	K11340 ACTL6A; actin-like protein 6A 
D      SWI/SNF complex
E        131314666 chromatin structure-remodeling complex protein BSH isoform X1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        131317929 RNA polymerase II transcriptional coactivator KELP	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        131303411 RNA polymerase II transcriptional coactivator KIWI-like isoform X1	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        131300767 protein SHORT ROOT IN SALT MEDIUM 1 isoform X1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        131326167 transcription elongation factor TFIIS isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        131310870 transcription elongation factor SPT4 homolog 2 isoform X1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        131311820 putative transcription elongation factor SPT5 homolog 1 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        131329088 putative transcription elongation factor SPT5 homolog 1 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        131317824 transcription elongation factor SPT6 homolog	K11292 SUPT6H; transcription elongation factor SPT6 
E        131320730 transcription elongation factor SPT6 homolog isoform X1	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        131324665 polyadenylation and cleavage factor homolog 4	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        131313451 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        131318796 cleavage and polyadenylation specificity factor subunit 1 isoform X1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        131304394 cleavage and polyadenylation specificity factor subunit 3-I	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        131304395 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        131312844 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        131330588 uncharacterized protein LOC131330588 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        131301199 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        131320469 serine/threonine-protein phosphatase PP1 isozyme 3-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        131322466 serine/threonine-protein phosphatase PP1-like isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        131326906 serine/threonine-protein phosphatase PP1 isozyme 9	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        131315187 serine/threonine-protein phosphatase PP1 isozyme 2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        131315508 serine/threonine-protein phosphatase PP1 isozyme 2-like isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        131300175 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        131332553 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        131326009 uncharacterized protein LOC131326009	K06100 SYMPK; symplekin 
E        131331993 uncharacterized protein LOC131331993 isoform X1	K06100 SYMPK; symplekin 
E        131336699 uncharacterized protein LOC131336699	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        131334452 5'-3' exoribonuclease 3-like isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        131330242 5'-3' exoribonuclease 3	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        131332106 NAD-capped RNA hydrolase DXO1	K14845 RAI1; RAT1-interacting protein 
E        131302429 uncharacterized protein LOC131302429 isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        131319510 uncharacterized protein LOC131319510	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        131304090 uncharacterized protein LOC131304090	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        131297971 uncharacterized protein LOC131297971	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        131298187 uncharacterized protein LOC131298187	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        131325136 peptidyl-prolyl cis-trans isomerase Pin1-like	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        131298386 peptidyl-prolyl cis-trans isomerase Pin1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        131299234 protein PAF1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        131324275 protein CDC73 homolog	K15175 CDC73; parafibromin 
E        131303941 protein CTR9 homolog isoform X1	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        131320028 protein CTR9 homolog isoform X1	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        131311371 protein LEO1 homolog isoform X1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        131331968 protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        131302616 uncharacterized protein LOC131302616	K15186 EAF; ELL-associated factor 
E        131321851 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        131310123 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        131328801 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        131330987 cyclin-T1-3	K15188 CCNT; cyclin T 
D      Little elongation complex (LEC)
D      Brd4/P-TEFb complex
E        131321851 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        131310123 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        131328801 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        131330987 cyclin-T1-3	K15188 CCNT; cyclin T 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        131320135 probable RNA methyltransferase At5g51130	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        131301810 la-related protein 6B	K15191 LARP7; La-related protein 7 
E        131308438 la-related protein 6C isoform X1	K15191 LARP7; La-related protein 7 
E        131315962 la-related protein 6A isoform X1	K15191 LARP7; La-related protein 7 
E        131321851 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        131310123 cyclin-T1-4-like isoform X1	K15188 CCNT; cyclin T 
E        131328801 cyclin-T1-3-like isoform X1	K15188 CCNT; cyclin T 
E        131330987 cyclin-T1-3	K15188 CCNT; cyclin T 
D      DBIRD complex
D      Others
E        131319787 TATA-binding protein-associated factor BTAF1 isoform X1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        131333139 protein Dr1 homolog isoform X1	K21751 DR1; down-regulator of transcription 1 
E        131334814 uncharacterized protein LOC131334814	K21752 DRAP1; Dr1-associated corepressor 
E        131312509 uncharacterized protein LOC131312509	K21752 DRAP1; Dr1-associated corepressor 
E        131302719 uncharacterized protein LOC131302719	K15193 SPTY2D1; protein SPT2 
E        131322205 RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        131315684 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1	K18998 CPL1_2; RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] 
E        131303600 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        131310181 RNA polymerase II C-terminal domain phosphatase-like 3	K18999 CPL3_4; RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:3.1.3.16] 
E        131301626 uncharacterized protein LOC131301626	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        131324467 uncharacterized protein LOC131324467	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        131312356 uncharacterized protein LOC131312356	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        131307744 protein IWS1 homolog 1	K17498 SPN1; transcription factor SPN1 
E        131307202 transcriptional elongation regulator MINIYO	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        131308683 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        131307469 uncharacterized protein LOC131307469 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        131303560 GPN-loop GTPase QQT2-like	K24104 GPN; GPN-loop GTPase 
E        131319418 GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        131336541 GPN-loop GTPase QQT1	K24104 GPN; GPN-loop GTPase 
E        131308346 GPN-loop GTPase 3-like	K24104 GPN; GPN-loop GTPase 
E        131316110 GPN-loop GTPase QQT2-like isoform X1	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        131320802 DNA-directed RNA polymerase III subunit 1 isoform X1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        131306394 DNA-directed RNA polymerase III subunit 2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        131323119 uncharacterized protein LOC131323119 isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        131314383 uncharacterized protein LOC131314383	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        131300234 uncharacterized protein LOC131300234	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        131319488 uncharacterized protein LOC131319488 isoform X1	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        131320034 uncharacterized protein LOC131320034	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        131313099 uncharacterized protein LOC131313099	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        131320737 uncharacterized protein LOC131320737	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        131321021 uncharacterized protein LOC131321021	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        131308003 uncharacterized protein LOC131308003	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        131325207 uncharacterized protein LOC131325207 isoform X1	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        131312800 uncharacterized protein LOC131312800 isoform X1	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        131314405 uncharacterized protein LOC131314405 isoform X1	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        131324006 uncharacterized protein LOC131324006	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        131332633 uncharacterized protein LOC131332633	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        131334545 uncharacterized protein LOC131334545	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
E        131307343 uncharacterized protein LOC131307343	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        131318632 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131306465 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131320774 DNA-directed RNA polymerases IV and V subunit 5B-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131310167 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131318860 DNA-directed RNA polymerases II and V subunit 6B-like isoform X1	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        131325410 DNA-directed RNA polymerases II and V subunit 6B-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        131299879 DNA-directed RNA polymerases II and V subunit 6B-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        131334204 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        131312820 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        131323468 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        131329538 DNA-directed RNA polymerases II, IV and V subunit 12-like	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        131319993 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        131314937 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        131331005 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        131324418 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        131315366 TATA-box-binding protein 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        131321219 plant-specific TFIIB-related protein PTF2-like	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        131311834 plant-specific TFIIB-related protein PTF2-like	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        131325804 transcription factor IIIB 60 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        131313153 plant-specific TFIIB-related protein PTF2-like	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        131313564 plant-specific TFIIB-related protein PTF2-like	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        131306664 uncharacterized protein LOC131306664	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        131335791 uncharacterized protein LOC131335791 isoform X1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        131325816 uncharacterized protein LOC131325816 isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        131333749 uncharacterized protein LOC131333749 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        131315640 uncharacterized protein LOC131315640 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        131301813 uncharacterized protein LOC131301813 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        131310926 uncharacterized protein LOC131310926 isoform X1	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
E        131324808 uncharacterized protein LOC131324808 isoform X1	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        131301813 uncharacterized protein LOC131301813 isoform X1	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        131333749 uncharacterized protein LOC131333749 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        131315640 uncharacterized protein LOC131315640 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        131300281 uncharacterized protein LOC131300281 isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        131329548 snRNA-activating protein complex subunit	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
D      Others
E        131300562 uncharacterized protein LOC131300562 isoform X1	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        131320812 DNA-directed RNA polymerase I subunit 1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        131334791 DNA-directed RNA polymerase I subunit 2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        131323119 uncharacterized protein LOC131323119 isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        131314383 uncharacterized protein LOC131314383	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        131303996 DNA-directed RNA polymerase I subunit rpa49-like	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        131335774 DNA-directed RNA polymerase I subunit rpa49-like	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        131334476 uncharacterized protein LOC131334476	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
E        131310370 uncharacterized protein LOC131310370 isoform X1	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
E        131316735 uncharacterized protein LOC131316735	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        131318632 DNA-directed RNA polymerase V subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131306465 DNA-directed RNA polymerases II and IV subunit 5A-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131320774 DNA-directed RNA polymerases IV and V subunit 5B-like	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131310167 DNA-directed RNA polymerases II and IV subunit 5A	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        131318860 DNA-directed RNA polymerases II and V subunit 6B-like isoform X1	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        131325410 DNA-directed RNA polymerases II and V subunit 6B-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        131299879 DNA-directed RNA polymerases II and V subunit 6B-like	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        131334204 DNA-directed RNA polymerases II and V subunit 8A-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        131312820 DNA-directed RNA polymerases II, IV and V subunit 8B-like	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        131323468 DNA-directed RNA polymerases II, IV and V subunit 12	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        131329538 DNA-directed RNA polymerases II, IV and V subunit 12-like	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        131319993 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
E        131314937 DNA-directed RNA polymerase subunit 10-like protein	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        131324418 TATA-box-binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        131315366 TATA-box-binding protein 2 isoform X1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
E        131332309 high mobility group B protein 13-like	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        131299052 uncharacterized protein LOC131299052	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        131336598 upstream activation factor subunit spp27-like isoform X1	K15223 UAF30; upstream activation factor subunit UAF30 
E        131327027 upstream activation factor subunit spp27-like	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        131310870 transcription elongation factor SPT4 homolog 2 isoform X1	K15171 SUPT4H1; transcription elongation factor SPT4 
E        131311820 putative transcription elongation factor SPT5 homolog 1 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
E        131329088 putative transcription elongation factor SPT5 homolog 1 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        131317696 ISWI chromatin-remodeling complex ATPase CHR11 isoform X1	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        131322080 ISWI chromatin-remodeling complex ATPase CHR11-like	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
E        131319995 RNA polymerase sigma factor sigA isoform X1	K03086 rpoD; RNA polymerase primary sigma factor 
E        131333206 RNA polymerase sigma factor sigC isoform X1	K03093 sigI; RNA polymerase sigma-I factor 
E        131319731 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial isoform X1	K03093 sigI; RNA polymerase sigma-I factor 
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        131334056 transcription initiation factor IIB-2-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        131334059 transcription initiation factor IIB-like	K03124 TFIIB; transcription initiation factor TFIIB 
E        131336708 plant-specific TFIIB-related protein 1	K03124 TFIIB; transcription initiation factor TFIIB 
E        131322850 transcription initiation factor IIB-2	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        131327568 LOW QUALITY PROTEIN: uncharacterized protein LOC131327568	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        131299917 transcription initiation factor IIE subunit alpha-like	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
#<hr>
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#Last updated: April 9, 2024