+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Rhagoletis zephyria (snowberry fruit fly)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        108382290 mRNA cap guanine-N7 methyltransferase	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        108374894 mRNA cap guanine-N7 methyltransferase-like	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        108375667 mRNA-capping enzyme isoform X1	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        108353935 mRNA-capping enzyme-like	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        108368692 cyclin-dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        108380029 cyclin-dependent kinase 7-like	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        108374497 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2	K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] 
E        108368750 RNMT-activating mini protein	K18708 FAM103A1; RNMT-activating mini protein 
D      Cap binding complex
E        108361957 nuclear cap-binding protein subunit 1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        108376229 nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
E        108376532 nuclear cap-binding protein subunit 2-like	K12883 NCBP2; nuclear cap-binding protein subunit 2 
E        108382468 nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        108378648 cleavage and polyadenylation specificity factor subunit 5-like	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        108373641 cleavage and polyadenylation specificity factor subunit 5-like	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        108374558 cleavage and polyadenylation specificity factor subunit CG7185	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        108382364 polyribonucleotide 5'-hydroxyl-kinase Clp1-like	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        108365828 protein CLP1 homolog	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        108357431 protein CLP1 homolog	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        108361042 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        108372722 cleavage and polyadenylation specificity factor subunit 1-like	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        108372157 cleavage and polyadenylation specificity factor subunit 2-like	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        108374836 probable cleavage and polyadenylation specificity factor subunit 2 isoform X1	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        108367584 cleavage and polyadenylation specificity factor 73	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        108379365 cleavage and polyadenylation specificity factor 73-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        108368211 cleavage and polyadenylation specificity factor subunit 4-like	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        108374328 cleavage and polyadenylation specificity factor subunit 4-like	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        108355792 cleavage and polyadenylation specificity factor subunit 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        108380565 pre-mRNA 3'-end-processing factor FIP1	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        108372973 pre-mRNA 3' end processing protein WDR33	K15542 PFS2; polyadenylation factor subunit 2 
E        108379006 WD repeat-containing protein 82-like	K14962 WDR82; COMPASS component SWD2 
E        108360629 WD repeat-containing protein 82	K14962 WDR82; COMPASS component SWD2 
E        108380273 WD repeat-containing protein 82-like	K14962 WDR82; COMPASS component SWD2 
E        108383061 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        108365460 serine/threonine-protein phosphatase beta isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        108375121 serine/threonine-protein phosphatase alpha-2 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        108356582 serine/threonine-protein phosphatase alpha-1 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        108370279 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        108372280 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        108379736 cleavage stimulation factor subunit 1-like	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        108366026 cleavage stimulation factor subunit 1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        108367585 cleavage stimulation factor subunit 2	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        108374506 cleavage stimulation factor subunit 3-like	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        108358048 protein suppressor of forked	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        108358904 symplekin	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        108366543 small nuclear ribonucleoprotein-associated protein B-like	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        108363235 small nuclear ribonucleoprotein-associated protein B	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        108359909 small nuclear ribonucleoprotein Sm D3	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        108382809 small nuclear ribonucleoprotein Sm D3-like	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        108373994 probable small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        108363847 small nuclear ribonucleoprotein F isoform X1	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        108376454 small nuclear ribonucleoprotein G-like	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        108370313 probable small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        108359206 U7 snRNA-associated Sm-like protein LSm10	K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 
E        108368524 U7 snRNA-associated Sm-like protein LSm11	K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 
E        108372157 cleavage and polyadenylation specificity factor subunit 2-like	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        108374836 probable cleavage and polyadenylation specificity factor subunit 2 isoform X1	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        108367584 cleavage and polyadenylation specificity factor 73	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        108379365 cleavage and polyadenylation specificity factor 73-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        108367585 cleavage stimulation factor subunit 2	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        108358904 symplekin	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        108361627 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        108374393 transcription elongation factor SPT4-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        108360486 transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
E        108354202 transcription elongation factor SPT5-like	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        108378968 N6-adenosine-methyltransferase subunit METTL3-like	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        108363877 probable N6-adenosine-methyltransferase MT-A70-like protein	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        108377258 methyltransferase-like protein 14 homolog	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        108369875 methyltransferase-like protein 14 homolog	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        108376736 methyltransferase-like protein 4	K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] 
E        108367852 methyltransferase-like protein 16	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        108364773 methyltransferase-like protein 16 homolog	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        108362452 pre-mRNA-splicing regulator female-lethal(2)D	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        108376946 LOW QUALITY PROTEIN: protein virilizer	K22910 VIRMA; protein virilizer 
E        108359601 putative RNA-binding protein 15	K13190 RBM15; RNA-binding protein 15 
E        108361341 uncharacterized protein LOC108361341	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        108367909 poly(A) polymerase type 3	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        108364546 RNA-binding protein 26	K13192 RBM26; RNA-binding protein 26 
E        108360479 TAR DNA-binding protein 43 isoform X1	K23600 TARDBP; TAR DNA-binding protein 43 
E        108382648 TAR DNA-binding protein 43-like	K23600 TARDBP; TAR DNA-binding protein 43 
C    Other processing factors
D      108374325 DNA/RNA-binding protein KIN17	K13102 KIN; DNA/RNA-binding protein KIN17 
D      108371675 methyltransferase-like protein 22	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      108377881 protein FAM46C-like	K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19] 
D      108359782 protein FAM46C isoform X1	K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19] 
D      108366361 serrate RNA effector molecule homolog isoform X1	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        108368915 RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        108359444 protein mago nashi	K12877 MAGOH; protein mago nashi 
E        108363528 THO complex subunit 4	K12881 THOC4; THO complex subunit 4 
E        108359939 ATP-dependent RNA helicase WM6	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        108371318 spliceosome RNA helicase DDX39B-like	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        108378347 eukaryotic initiation factor 4A-III-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        108370366 eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        108368036 coiled-coil domain-containing protein 174 isoform X1	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        108382729 histone deacetylase complex subunit SAP18-like	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        108382727 histone deacetylase complex subunit SAP18 isoform X1	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        108354230 histone deacetylase complex subunit SAP18-like	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        108367513 pinin-like isoform X1	K13114 PNN; pinin 
E        108376219 apoptotic chromatin condensation inducer in the nucleus isoform X1	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        108375490 RNA-binding protein with serine-rich domain 1-B-like	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        108382922 RNA-binding protein with serine-rich domain 1-B-like isoform X1	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        108367159 serine/arginine repetitive matrix protein 1 isoform X1	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        108358187 THO complex subunit 1	K12878 THOC1; THO complex subunit 1 
E        108370408 THO complex subunit 2	K12879 THOC2; THO complex subunit 2 
E        108379950 THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        108363528 THO complex subunit 4	K12881 THOC4; THO complex subunit 4 
E        108363017 THO complex subunit 5	K13174 THOC5; THO complex subunit 5 
E        108367638 THO complex subunit 6	K13175 THOC6; THO complex subunit 6 
E        108381776 THO complex protein 7-like	K13176 THOC7; THO complex subunit 7 
E        108365244 THO complex protein 7-like	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        108376008 PCI domain-containing protein 2-like	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        108364679 PCI domain-containing protein 2 homolog isoform X1	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        108373357 enhancer of yellow 2 transcription factor-like	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        108373309 centrin-2-like	K10840 CETN2; centrin-2 
D      Nuclear pore complex
E        108367280 nucleoprotein TPR isoform X1	K09291 TPR; nucleoprotein TPR 
E        108361045 mRNA export factor	K14298 RAE1; mRNA export factor 
E        108382874 mRNA export factor-like	K14298 RAE1; mRNA export factor 
E        108366323 protein SEC13 homolog	K14004 SEC13; protein transport protein SEC13 
E        108363853 nucleoporin Nup37	K14302 NUP37; nuclear pore complex protein Nup37 
E        108360400 nuclear pore complex protein Nup85	K14304 NUP85; nuclear pore complex protein Nup85 
E        108355722 nucleoporin Nup43	K14305 NUP43; nuclear pore complex protein Nup43 
E        108358683 nuclear pore complex protein Nup50	K14295 NUP50; nuclear pore complex protein Nup50 
E        108361620 probable nucleoporin Nup54	K14308 NUP54; nuclear pore complex protein Nup54 
E        108359660 nuclear pore glycoprotein p62	K14306 NUP62; nuclear pore complex protein Nup62 
E        108359050 nuclear pore complex protein Nup88	K14318 NUP88; nuclear pore complex protein Nup88 
E        108368283 nuclear pore complex protein Nup98-Nup96	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        108370949 nuclear pore complex protein Nup107 isoform X1	K14301 NUP107; nuclear pore complex protein Nup107 
E        108377235 nuclear pore complex protein Nup133 isoform X1	K14300 NUP133; nuclear pore complex protein Nup133 
E        108368425 nucleoporin NUP188 homolog	K14311 NUP188; nuclear pore complex protein Nup188 
E        108359724 nuclear pore complex protein Nup155	K14312 NUP155; nuclear pore complex protein Nup155 
E        108369644 nuclear pore complex protein Nup160 homolog isoform X1	K14303 NUP160; nuclear pore complex protein Nup160 
E        108382575 nucleoporin NUP53	K14313 NUP35; nuclear pore complex protein Nup53 
E        108365988 nuclear pore membrane glycoprotein 210 isoform X1	K14314 NUP210; nuclear pore complex protein Nup210 
E        108365498 probable nucleoporin Nup58	K14307 NUPL1; nucleoporin p58/p45 
E        108380453 nucleoporin Ndc1	K14315 NDC1; nucleoporin NDC1 
E        108372541 nucleoporin seh1-A-like	K14299 SEH1; nucleoporin SEH1 
E        108372542 nucleoporin SEH1-like	K14299 SEH1; nucleoporin SEH1 
E        108372725 nucleoporin SEH1-like	K14299 SEH1; nucleoporin SEH1 
E        108356434 nucleoporin seh1-like	K14299 SEH1; nucleoporin SEH1 
E        108369667 LOW QUALITY PROTEIN: aladin-like	K14320 AAAS; aladin 
E        108371153 nuclear RNA export factor 1	K14284 NXF; nuclear RNA export factor 
E        108360579 NTF2-related export protein	K14285 NXT1_2; NTF2-related export protein 1/2 
D      Ran-mediated transport factors
E        108366789 GTP-binding nuclear protein Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        108359544 acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1	K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D 
E        108375347 acidic leucine-rich nuclear phosphoprotein 32 family member B-like	K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D 
E        108379171 protein elav	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        108374673 ELAV-like protein 2	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        108364493 FAS-associated factor 2-like	K18726 FAF2; FAS-associated factor 2 
E        108364503 FAS-associated factor 2-like	K18726 FAF2; FAS-associated factor 2 
E        108359787 transitional endoplasmic reticulum ATPase TER94-like	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        108372228 transitional endoplasmic reticulum ATPase TER94	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        108375069 transitional endoplasmic reticulum ATPase-like	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        108379967 exportin-1-like	K14290 XPO1; exportin-1 
E        108364135 exportin-1	K14290 XPO1; exportin-1 
E        108360448 ran-binding protein 16	K18460 XPO7; exportin-7 
E        108363493 exportin-7-like	K18460 XPO7; exportin-7 
E        108374461 ran-binding protein 16-like	K18460 XPO7; exportin-7 
E        108370747 ran GTPase-activating protein	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        108378409 eukaryotic translation initiation factor 4E type 2-like	K03259 EIF4E; translation initiation factor 4E 
E        108380506 eukaryotic translation initiation factor 4E isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        108363361 eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        108355737 eukaryotic translation initiation factor 4E-like	K03259 EIF4E; translation initiation factor 4E 
E        108366926 ATP-dependent RNA helicase eIF4A-like	K03257 EIF4A; translation initiation factor 4A 
E        108361327 eukaryotic initiation factor 4A	K03257 EIF4A; translation initiation factor 4A 
E        108365144 uncharacterized protein LOC108365144	K03260 EIF4G; translation initiation factor 4G 
E        108363150 eukaryotic translation initiation factor 4 gamma 3 isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        108364062 eukaryotic translation initiation factor 4B isoform X1	K03258 EIF4B; translation initiation factor 4B 
E        108359814 eukaryotic translation initiation factor 4H isoform X1	K24086 EIF4H; translation initiation factor 4H 
E        108366021 eukaryotic translation initiation factor 4E-binding protein 1-like	K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1 
E        108360253 eukaryotic translation initiation factor 4E-binding protein 3	K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 
E        108376977 protein angel	K18729 ANGEL; protein angel 
E        108370358 synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        108375134 cytoplasmic FMR1-interacting protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        108363473 cytoplasmic polyadenylation element-binding protein 3-like	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        108374785 probable RNA-binding protein orb2	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        108365765 cytoplasmic polyadenylation element-binding protein 1-like	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        108363461 ATP-dependent RNA helicase DDX3X-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        108364376 ATP-dependent RNA helicase bel	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        108364663 polyadenylate-binding protein isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        108375634 polyadenylate-binding protein 4-like	K13126 PABPC; polyadenylate-binding protein 
E        108367566 polyadenylate-binding protein-interacting protein 1	K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 
E        108363994 polyadenylate-binding protein-interacting protein 2	K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 
E        108376440 LOW QUALITY PROTEIN: helicase SKI2W-like	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        108355133 helicase SKI2W-like	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        108359401 deformed epidermal autoregulatory factor 1	K23041 DEAF1; deformed epidermal autoregulatory factor 1 
E        108376001 malignant T-cell-amplified sequence 1 homolog	K07575 MCTS; malignant T-cell-amplified sequence 
E        108376239 malignant T-cell-amplified sequence 1 homolog	K07575 MCTS; malignant T-cell-amplified sequence 
E        108380036 malignant T-cell-amplified sequence 1 homolog	K07575 MCTS; malignant T-cell-amplified sequence 
E        108379923 density-regulated protein homolog	K24272 DENR; density-regulated protein 
E        108374023 LOW QUALITY PROTEIN: density-regulated protein homolog	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        108360741 partner of Y14 and mago	K14294 WIBG; partner of Y14 and mago 
E        108371853 heterogeneous nuclear ribonucleoprotein A1-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        108381231 heterogeneous nuclear ribonucleoprotein 87F-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        108382681 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein 87F-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        108369368 heterogeneous nuclear ribonucleoprotein 27C	K14411 MSI; RNA-binding protein Musashi 
E        108370468 ribonucleoprotein RB97D	K14411 MSI; RNA-binding protein Musashi 
E        108364567 RNA-binding protein Musashi homolog 1	K14411 MSI; RNA-binding protein Musashi 
E        108380284 HBS1-like protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        108362941 HBS1-like protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        108379382 protein pelota-like	K06965 PELO; protein pelota 
E        108371302 protein pelota-like	K06965 PELO; protein pelota 
E        108372037 protein pelota	K06965 PELO; protein pelota 
E        108379174 polyadenylate-binding protein 2-like	K14396 PABPN1; polyadenylate-binding protein 2 
E        108381606 polyadenylate-binding protein 2 isoform X1	K14396 PABPN1; polyadenylate-binding protein 2 
E        108376169 ATP-dependent RNA helicase DDX19A-like	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        108362869 pre-mRNA-splicing factor SYF1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        108368547 uncharacterized protein LOC108368547	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        108364312 regulator of chromosome condensation	K11493 RCC1; regulator of chromosome condensation 
E        108366172 uncharacterized protein LOC108366172	K18733 LARP6; la-related protein 6 
E        108370072 transcriptional activator protein Pur-beta-like	K21772 PURA; transcriptional activator protein Pur-alpha 
E        108358139 transcriptional activator protein Pur-beta-like	K21772 PURA; transcriptional activator protein Pur-alpha 
E        108370276 LOW QUALITY PROTEIN: polymerase delta-interacting protein 3-like	K22414 POLDIP3; polymerase delta-interacting protein 3 
E        108354966 leukocyte receptor cluster member 8 homolog isoform X1	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        108382831 eukaryotic peptide chain release factor subunit 1-like	K03265 ETF1; peptide chain release factor subunit 1 
E        108354639 eukaryotic peptide chain release factor subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
E        108382783 eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like	K03267 ERF3; peptide chain release factor subunit 3 
E        108357538 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1	K03267 ERF3; peptide chain release factor subunit 3 
E        108370843 regulator of nonsense transcripts 1 homolog	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        108368009 LOW QUALITY PROTEIN: regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
D      Protein phosphatase 2A
E        108368712 serine/threonine-protein phosphatase PP2A	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        108362378 serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit isoform X1	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        108354288 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        108382886 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform-like	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        108364895 protein phosphatase PP2A 55 kDa regulatory subunit isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        108370712 serine-rich adhesin for platelets	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        108375546 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        108368439 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        108373942 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        108374596 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        108358690 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        108367402 serine/threonine-protein kinase Smg1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        108357931 protein SMG5	K11125 SMG5; protein SMG5 
E        108362539 telomerase-binding protein EST1A isoform X1	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        108370952 protein SMG8	K18734 SMG8; protein SMG8 
E        108362260 protein SMG9	K18735 SMG9; protein SMG9 
E        108366861 probable ATP-dependent RNA helicase DHX34	K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] 
E        108370386 probable ATP-dependent RNA helicase DHX34	K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] 
E        108367598 GTP-binding protein 1-like	K24887 GTPBP1; GTP-binding protein 1 
E        108374060 GTP-binding protein 1	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        108376022 protein penguin-like isoform X1	K14844 PUF6; pumilio homology domain family member 6 
E        108375664 protein penguin-like isoform X1	K14844 PUF6; pumilio homology domain family member 6 
E        108359555 unconventional myosin-Va isoform X1	K10357 MYO5; myosin V 
E        108366247 LOW QUALITY PROTEIN: protein bicaudal D-like	K18739 BICD; protein bicaudal D 
E        108370421 protein bicaudal D-like	K18739 BICD; protein bicaudal D 
E        108363624 uncharacterized protein LOC108363624	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
E        108377648 actin-85C-like	K05692 ACTB_G1; actin beta/gamma 1 
E        108377657 actin-5C-like	K05692 ACTB_G1; actin beta/gamma 1 
E        108370126 actin-5C-like	K05692 ACTB_G1; actin beta/gamma 1 
E        108380792 actin-like	K05692 ACTB_G1; actin beta/gamma 1 
E        108380793 actin, clone 302-like	K05692 ACTB_G1; actin beta/gamma 1 
E        108373852 actin, clone 302-like	K05692 ACTB_G1; actin beta/gamma 1 
E        108374588 actin, cytoplasmic A3a	K05692 ACTB_G1; actin beta/gamma 1 
E        108375831 actin-4-like	K05692 ACTB_G1; actin beta/gamma 1 
E        108356492 actin-5C-like	K05692 ACTB_G1; actin beta/gamma 1 
E        108372613 myc protein-like	K04377 MYC; Myc proto-oncogene protein 
E        108370182 T-box protein 2-like	K10180 TBX6; T-box protein 6 
E        108374239 T-box transcription factor TBX3-like	K10180 TBX6; T-box protein 6 
E        108374280 T-box transcription factor TBX6-like	K10180 TBX6; T-box protein 6 
E        108366458 protein deadpan isoform X1	K09090 HESN; hairy and enhancer of split, invertebrate 
E        108379316 enhancer of split m3 protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        108360715 enhancer of split m8 protein-like	K09090 HESN; hairy and enhancer of split, invertebrate 
E        108360716 enhancer of split m7 protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        108381127 protein hairy-like	K09090 HESN; hairy and enhancer of split, invertebrate 
E        108372050 LOW QUALITY PROTEIN: protein hairy-like	K09090 HESN; hairy and enhancer of split, invertebrate 
E        108372075 enhancer of split m8 protein-like	K09090 HESN; hairy and enhancer of split, invertebrate 
E        108364243 enhancer of split mdelta protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        108364244 enhancer of split mgamma protein	K09090 HESN; hairy and enhancer of split, invertebrate 
D      Trans-acting binding proteins
E        108371823 far upstream element-binding protein 3	K13210 FUBP; far upstream element-binding protein 
E        108380112 elongation factor 1-alpha-like	K03231 EEF1A; elongation factor 1-alpha 
E        108380941 elongation factor 1-alpha 2	K03231 EEF1A; elongation factor 1-alpha 
E        108372646 elongation factor 1-alpha 1	K03231 EEF1A; elongation factor 1-alpha 
E        108371488 elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
E        108370685 maternal effect protein staufen isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        108358025 polypyrimidine tract-binding protein 1	K13218 PTBP1; polypyrimidine tract-binding protein 1 
E        108372640 RNA-binding protein squid isoform X1	K03102 SQD; squid 
E        108363473 cytoplasmic polyadenylation element-binding protein 3-like	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        108374785 probable RNA-binding protein orb2	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        108365765 cytoplasmic polyadenylation element-binding protein 1-like	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
D      Other mRNA localization factors
E        108370358 synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        108375134 cytoplasmic FMR1-interacting protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        108372306 uncharacterized protein LOC108372306 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        108372569 poly(rC)-binding protein 3-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        108354350 poly(rC)-binding protein 3-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        108373476 CUGBP Elav-like family member 2 isoform X1	K02177 BRU; bruno 
E        108375482 LOW QUALITY PROTEIN: maternal protein exuperantia	K18745 EXU; maternal protein exuperantia 
E        108378945 Y-box factor homolog	K09276 YBX1; Y-box-binding protein 1 
E        108364373 sex-lethal homolog	K18747 SXL; protein sex-lethal 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        108366859 5'-3' exoribonuclease 1 isoform X1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        108383214 protein argonaute-2-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        108365762 protein argonaute-2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        108378409 eukaryotic translation initiation factor 4E type 2-like	K03259 EIF4E; translation initiation factor 4E 
E        108380506 eukaryotic translation initiation factor 4E isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        108363361 eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        108355737 eukaryotic translation initiation factor 4E-like	K03259 EIF4E; translation initiation factor 4E 
E        108370843 regulator of nonsense transcripts 1 homolog	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        108363461 ATP-dependent RNA helicase DDX3X-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        108364376 ATP-dependent RNA helicase bel	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        108379362 putative ATP-dependent RNA helicase me31b	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        108358673 putative ATP-dependent RNA helicase me31b	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        108382528 protein LSM14 homolog B-A-like	K18749 LSM14; protein LSM14 
E        108378945 Y-box factor homolog	K09276 YBX1; Y-box-binding protein 1 
E        108369744 LIM domain-containing protein jub	K16682 AJUBA; LIM domain-containing protein 
E        108364706 putative helicase MOV-10	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        108378674 transportin-1-like	K18752 TNPO1; transportin-1 
E        108374223 transportin-1-like isoform X1	K18752 TNPO1; transportin-1 
E        108367402 serine/threonine-protein kinase Smg1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        108357931 protein SMG5	K11125 SMG5; protein SMG5 
E        108362539 telomerase-binding protein EST1A isoform X1	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        108359650 protein TIS11-like	K15308 TTP; tristetraprolin 
E        108377409 protein lin-28 homolog	K18754 LIN28; protein lin-28 
E        108366296 protein bicaudal C	K18756 BICC1; protein bicaudal C 
E        108371853 heterogeneous nuclear ribonucleoprotein A1-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        108381231 heterogeneous nuclear ribonucleoprotein 87F-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        108382681 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein 87F-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        108366376 cAMP-dependent protein kinase catalytic subunit	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        108367328 cAMP-dependent protein kinase catalytic subunit-like	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        108368549 la-related protein 1	K18757 LARP1; la-related protein 1 
E        108361446 ataxin-2 homolog	K23625 ATXN2_2L; ataxin 2/2L 
D      P-body specific factors
E        108363617 mRNA-decapping enzyme 1B	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        108360684 U6 snRNA-associated Sm-like protein LSm1 isoform X1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        108371687 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        108370993 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        108376858 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        108355994 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        108380169 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        108375304 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        108378135 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        108355017 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        108354935 U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        108375645 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        108373190 kinesin light chain	K10407 KLC; kinesin light chain 
E        108359555 unconventional myosin-Va isoform X1	K10357 MYO5; myosin V 
E        108379128 tubulin alpha-8 chain-like	K07374 TUBA; tubulin alpha 
E        108379597 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        108360326 tubulin alpha-4 chain-like	K07374 TUBA; tubulin alpha 
E        108370562 tubulin alpha-4 chain	K07374 TUBA; tubulin alpha 
E        108370935 tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        108373315 tubulin alpha-1 chain	K07374 TUBA; tubulin alpha 
E        108375456 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        108363473 cytoplasmic polyadenylation element-binding protein 3-like	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        108374785 probable RNA-binding protein orb2	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        108365765 cytoplasmic polyadenylation element-binding protein 1-like	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        108359960 protein Gawky isoform X1	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        108360305 CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        108372752 regulator of gene activity isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        108377084 CCR4-NOT transcription complex subunit 3-like	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        108367003 CCR4-NOT transcription complex subunit 6-like	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        108378181 CCR4-NOT transcription complex subunit 6-like	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        108359333 CCR4-NOT transcription complex subunit 7 isoform X1	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        108358774 PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        108381148 PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        108374481 PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        108374359 protein Tob1 isoform X1	K14443 TOB; protein Tob/BTG 
E        108364556 uncharacterized protein LOC108364556 isoform X1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        108360323 enhancer of mRNA-decapping protein 3 isoform X1	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        108364260 enhancer of mRNA-decapping protein 4 homolog	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        108368009 LOW QUALITY PROTEIN: regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
E        108359592 protein wech	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        108363961 RING finger protein nhl-1 isoform X1	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        108382691 DNA-directed RNA polymerase II subunit RPB7-like	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        108365491 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        108363979 YTH domain-containing family protein 2	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        108360776 nucleolysin TIA-1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        108358706 nucleolysin TIAR isoform X1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        108364663 polyadenylate-binding protein isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        108375634 polyadenylate-binding protein 4-like	K13126 PABPC; polyadenylate-binding protein 
E        108370685 maternal effect protein staufen isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        108370358 synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        108380322 protein bunched, class 2/F/G isoform-like	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        108366733 eukaryotic translation initiation factor 2A	K15026 EIF2A; translation initiation factor 2A 
E        108380002 eukaryotic translation initiation factor 3 subunit B-like	K03253 EIF3B; translation initiation factor 3 subunit B 
E        108365418 eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        108366926 ATP-dependent RNA helicase eIF4A-like	K03257 EIF4A; translation initiation factor 4A 
E        108361327 eukaryotic initiation factor 4A	K03257 EIF4A; translation initiation factor 4A 
E        108378347 eukaryotic initiation factor 4A-III-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        108370366 eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        108364062 eukaryotic translation initiation factor 4B isoform X1	K03258 EIF4B; translation initiation factor 4B 
E        108365144 uncharacterized protein LOC108365144	K03260 EIF4G; translation initiation factor 4G 
E        108363150 eukaryotic translation initiation factor 4 gamma 3 isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        108372178 ribosomal protein S6 kinase 2 beta	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        108370847 guanine nucleotide-binding protein subunit beta-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        108381315 receptor of activated protein C kinase 1-like	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        108371153 nuclear RNA export factor 1	K14284 NXF; nuclear RNA export factor 
E        108364407 histone deacetylase 6-like	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        108363617 mRNA-decapping enzyme 1B	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        108379362 putative ATP-dependent RNA helicase me31b	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        108358673 putative ATP-dependent RNA helicase me31b	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        108360323 enhancer of mRNA-decapping protein 3 isoform X1	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        108364260 enhancer of mRNA-decapping protein 4 homolog	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        108364556 uncharacterized protein LOC108364556 isoform X1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        108360684 U6 snRNA-associated Sm-like protein LSm1 isoform X1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        108371687 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        108370993 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        108376858 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        108355994 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        108380169 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        108375304 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        108378135 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        108355017 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        108354935 U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        108375645 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        108366859 5'-3' exoribonuclease 1 isoform X1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        108364273 LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2 homolog	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        108358893 m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        108370780 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
E        108379526 exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        108369728 exosome complex component RRP40-like	K03681 RRP40; exosome complex component RRP40 
E        108362948 exosome complex component RRP40	K03681 RRP40; exosome complex component RRP40 
E        108370752 exosome complex component RRP41 isoform X1	K11600 RRP41; exosome complex component RRP41 
E        108362678 exosome complex component RRP46	K12590 RRP46; exosome complex component RRP46 
E        108360114 exosome complex component MTR3	K12587 MTR3; exosome complex component MTR3 
E        108368242 exosome complex component RRP42 isoform X1	K12589 RRP42; exosome complex component RRP42 
E        108370093 exosome complex component RRP45 isoform X1	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        108360512 exosome complex exonuclease RRP44	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        108370840 exosome component 10	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        108370477 nuclear nucleic acid-binding protein C1D	K12592 C1D; exosome complex protein LRP1 
E        108371684 M-phase phosphoprotein 6-like	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
E        108357720 M-phase phosphoprotein 6	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
D      TRAMP complex
E        108369738 non-canonical poly(A) RNA polymerase PAPD5	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        108374896 non-canonical poly(A) RNA polymerase PAPD5-like	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        108371677 superkiller viralicidic activity 2-like 2	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
E        108371854 superkiller viralicidic activity 2-like 2	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        108376440 LOW QUALITY PROTEIN: helicase SKI2W-like	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        108355133 helicase SKI2W-like	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        108361116 LOW QUALITY PROTEIN: tetratricopeptide repeat protein 37-like	K12600 SKI3; superkiller protein 3 
E        108381279 LOW QUALITY PROTEIN: tetratricopeptide repeat protein 37-like	K12600 SKI3; superkiller protein 3 
E        108372565 WD repeat-containing protein 61	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        108367003 CCR4-NOT transcription complex subunit 6-like	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        108378181 CCR4-NOT transcription complex subunit 6-like	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        108360305 CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        108372752 regulator of gene activity isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        108377084 CCR4-NOT transcription complex subunit 3-like	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        108359333 CCR4-NOT transcription complex subunit 7 isoform X1	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        108359817 cell differentiation protein RCD1 homolog	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        108380341 cell differentiation protein RCD1 homolog	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        108370402 CCR4-NOT transcription complex subunit 10 isoform X1	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
D      Pan complex
E        108358774 PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        108381148 PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        108374481 PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        108380082 ATP-dependent RNA helicase DHX36	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        108374359 protein Tob1 isoform X1	K14443 TOB; protein Tob/BTG 
E        108373523 uncharacterized protein LOC108373523 isoform X1	K18764 NOCT; nocturnin [EC:3.1.3.108] 
E        108381931 ERI1 exoribonuclease 2 isoform X1	K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] 
E        108358893 m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        108360444 2',5'-phosphodiesterase 12 isoform X1	K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] 
E        108361367 protein Smaug isoform X1	K27396 SMG; protein Smaug 
E        108363039 focadhesin isoform X1	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        108362707 ribonuclease 3 isoform X1	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        108382901 ribonuclease 3-like	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        108376444 probable oligoribonuclease	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
E        108367610 oligoribonuclease, mitochondrial-like	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        108378877 enolase-like	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        108372610 enolase-like	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        108374400 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        108375238 enolase-like	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        108378915 LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase 1, mitochondrial	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        108375144 polyribonucleotide nucleotidyltransferase 1, mitochondrial-like	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        108378148 ATP-dependent 6-phosphofructokinase-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        108379959 ATP-dependent 6-phosphofructokinase-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        108380693 ATP-dependent 6-phosphofructokinase-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        108382908 ATP-dependent 6-phosphofructokinase, platelet type-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        108366174 LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        108356577 ATP-dependent 6-phosphofructokinase-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        108364809 heat shock 70 kDa protein cognate 5	K04043 dnaK; molecular chaperone DnaK 
E        108381729 60 kDa heat shock protein, mitochondrial-like	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        108362058 60 kDa heat shock protein, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        108379526 exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        108370780 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        108370752 exosome complex component RRP41 isoform X1	K11600 RRP41; exosome complex component RRP41 
E        108368242 exosome complex component RRP42 isoform X1	K12589 RRP42; exosome complex component RRP42 
D      Others
!
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#Last updated: April 25, 2024