+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Saliniradius amylolyticus
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D HMF8227_00907 rnt1; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D HMF8227_02780 rex2; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C HMF8227_00908 GTPase Era K03595 era; GTPase
C HMF8227_00442 GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C HMF8227_00358 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
C HMF8227_02309 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C HMF8227_01080 Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C HMF8227_00929 N utilization substance protein B like protein K03625 nusB; transcription antitermination protein NusB
C HMF8227_00428 Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D HMF8227_00447 ksgA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D HMF8227_00021 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D HMF8227_00304 rsmC; 16S rRNA (guanine(1207)-N(2))-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D HMF8227_00352 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D HMF8227_02409 rsmE; 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D HMF8227_01406 rsmF; 16S rRNA (cytosine(1407)-C(5))-methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D HMF8227_02997 gidB; 16S rRNA (guanine(527)-N(7))-methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D HMF8227_02478 mraW; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D HMF8227_02482 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D HMF8227_02903 rsmJ; 16S rRNA (guanine(1516)-N(2))-methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D HMF8227_00392 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D HMF8227_01732 23S rRNA (uridine(2552)-2'-O)-methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D HMF8227_00956 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D HMF8227_01425 rlmL; 23S rRNA (guanine(2445)-N(2))-methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D HMF8227_01022 rlmM; 23S rRNA (cytidine(2498)-2'-O)-methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D HMF8227_02250 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D HMF8227_00521 rumA; 23S rRNA (uracil(1939)-C(5))-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D HMF8227_01975 tRNA pseudouridine(32) synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D HMF8227_00554 rluA; tRNA pseudouridine(32) synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D HMF8227_01675 rluB; 23S rRNA pseudouridine(2605) synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D HMF8227_01558 rluC; 23S rRNA pseudouridine(955/2504/2580) synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D HMF8227_02197 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D HMF8227_01618 rluE; 23S rRNA pseudouridine(2457) synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D HMF8227_01729 23S rRNA pseudouridine(2605) synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C HMF8227_02048 rimI; Ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C HMF8227_00135 putative alpha-L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C HMF8227_01886 Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C HMF8227_01776 rimO; [Ribosomal protein S12] (aspartate(89)-C(3))-methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C HMF8227_02851 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C HMF8227_01967 prmB; Ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
B rRNA processing factors
C HMF8227_00907 rnt1; Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C HMF8227_01559 Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C HMF8227_00291 cafA; Ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-]
C HMF8227_02418 ruvX; Putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C HMF8227_02621 dbpA; RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C HMF8227_00560 deaD; RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C HMF8227_02290 RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C HMF8227_00908 GTPase Era K03595 era; GTPase
C HMF8227_02779 rsgA; Putative ribosome bioproteinis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C HMF8227_02243 GTPase Der K03977 engA; GTPase
C HMF8227_00442 GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C HMF8227_01734 Ribosome bioproteinis GTPase K14540 rbgA; ribosome biogenesis GTPase A
C HMF8227_02827 GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C HMF8227_00028 tsaC; L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C HMF8227_02898 spoT; Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C HMF8227_01082 Ribosome-binding factor K02834 rbfA; ribosome-binding factor A
C HMF8227_01079 Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C HMF8227_00957 Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C HMF8227_00992 Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
C HMF8227_01027 RNA-binding protein K07574 yhbY; RNA-binding protein
C HMF8227_00295 UPF0307 protein K09889 yjgA; ribosome-associated protein
C HMF8227_01429 Ribosome modulation factor K03812 rmf; ribosome modulation factor
C HMF8227_02512 Ribosome hibernation promoting factor K05808 hpf; ribosome hibernation promoting factor
C HMF8227_01004 Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C HMF8227_01555 uncharacterized protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024