+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Salmonella sp. SSDFZ69

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D EOS98_06040 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D EOS98_20495 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C EOS98_06045 era; GTPase Era K03595 era; GTPase C EOS98_02780 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C EOS98_18280 RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor C EOS98_02850 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C EOS98_17020 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C EOS98_21590 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D EOS98_07850 rsuA; 16S rRNA pseudouridine(516) synthase RsuA K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D EOS98_18785 rsmA; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D EOS98_02235 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D EOS98_19470 rsmC; 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D EOS98_01445 16S rRNA (guanine(966)-N(2))-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D EOS98_03895 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D EOS98_09970 rsmF; 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D EOS98_22980 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D EOS98_18630 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D EOS98_02965 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D EOS98_01340 rsmJ; 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D EOS98_10045 23S rRNA (guanine(745)-N(1))-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D EOS98_20395 rlmB; 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D EOS98_02800 rlmE; 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D EOS98_15015 rlmF; 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D EOS98_03190 rlmG; 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D EOS98_15915 rlmH; 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D EOS98_14220 rlmI; 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D EOS98_01325 rlmJ; 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D EOS98_14315 rlmL; bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D EOS98_04530 rlmM; 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D EOS98_06325 rlmN; bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D EOS98_04655 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D EOS98_14770 rlmC; 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D EOS98_18760 rluA; bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D EOS98_10655 rluB; 23S rRNA pseudouridine(2605) synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D EOS98_13620 rluC; 23S rRNA pseudouridine(955/2504/2580) synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D EOS98_05880 rluD; 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D EOS98_13365 rluE; 23S rRNA pseudouridine(2457) synthase RluE K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D EOS98_21365 rluF; 23S rRNA pseudouridine(2604) synthase RluF K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D EOS98_05955 tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C EOS98_19460 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C EOS98_13745 30S ribosomal protein S5 alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C EOS98_14805 30S ribosomal protein S6--L-glutamate ligase K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C EOS98_11325 50S ribosomal protein L7/L12-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] C EOS98_05815 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C EOS98_14890 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C EOS98_14495 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C EOS98_02365 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C EOS98_07085 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C EOS98_13405 cupin domain-containing protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C EOS98_06040 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C EOS98_13630 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] C EOS98_02435 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C EOS98_03880 ruvX; Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C EOS98_11050 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C EOS98_02890 DEAD/DEAH family ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C EOS98_05980 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C EOS98_06045 era; GTPase Era K03595 era; GTPase C EOS98_20500 rsgA; small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C EOS98_06355 ribosome biogenesis GTPase Der K03977 engA; GTPase C EOS98_02780 GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C EOS98_20435 hflX; GTPase HflX K03665 hflX; GTPase B Other maturation factors C EOS98_02265 tsaC; L-threonylcarbamoyladenylate synthase type 1 TsaC K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C EOS98_00515 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C EOS98_02860 rbfA; 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A C EOS98_02845 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C EOS98_16395 ybcJ; ribosome-associated protein YbcJ K14761 rlbA; ribosome-associated protein C EOS98_15910 ribosome silencing factor K09710 ybeB; ribosome-associated protein C EOS98_15780 ybeY; rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor C EOS98_02795 yhbY; ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein C EOS98_00790 YibL family ribosome-associated protein K14762 yibL; ribosome-associated protein C EOS98_20050 ribosome-associated protein K09889 yjgA; ribosome-associated protein C EOS98_14290 ribosome modulation factor K03812 rmf; ribosome modulation factor C EOS98_02680 ribosome hibernation promoting factor K05808 hpf; ribosome hibernation promoting factor C EOS98_05865 raiA; ribosome-associated translation inhibitor RaiA K05809 raiA; ribosome-associated inhibitor A C EOS98_11575 stationary-phase-induced ribosome-associated protein K02972 sra; stationary-phase-induced ribosome-associated protein C EOS98_10305 ychF; redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C EOS98_13600 yceD; 23S rRNA accumulation protein YceD K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024