+E Transcription factors KO #

  Transcription Factors - Salmonella bongori NCTC 12419

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D SBG_1818 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D SBG_0090 araC; arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D SBG_0954 hpaA; 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D SBG_3562 rhaR; L-rhamnose operon transcriptional activator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D SBG_3561 rhaS; L-rhamnose operon regulatory protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D SBG_1169 celD; putative cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D SBG_3736 adiY; putative AraC family regulatory protein K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D SBG_3709 soxS; regulatory protein SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D SBG_1345 marA; multiple antibiotic resistance protein MarA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator D SBG_3993 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D SBG_0489 ramA; transcriptional activator RamA K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator D SBG_0472 ykgD; hypothetical araC-family transcriptional regulator K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon D SBG_3738 melR; melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D SBG_1124 putative transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT D SBG_2063 ada; ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D SBG_2590 gcvA; regulatory protein for glycine cleavage pathway K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SBG_3450 ilvY; LysR-family regulatory protein for ilvC expression K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D SBG_3498 metR; trans-activator of metE and metH K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D SBG_0040 nhaR; transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D SBG_3615 oxyR; hydrogen peroxide-inducible regulon activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SBG_2657 iciA; chromosome intitiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D SBG_0103 leuO; putative activator protein in leuABCD operon K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D SBG_2882 tdcA; TDC operon transcriptional activator K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator D SBG_2666 hypothetical lysR-family transcriptional regulator K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon D SBG_1576 cysB; cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D SBG_0582 lysR-family transcriptional regulator K13794 tcuR; LysR family transcriptional regulator, regulatory protein for tcuABC D SBG_1515 putative lysR-family regulatory protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D SBG_3927 putative transcriptional activator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D SBG_2985 putative LysR-family transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D SBG_2798 ttdR; putative LysR-family transcriptional regulatory protein K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon D SBG_3442 putative LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D SBG_0742 deoR; deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D SBG_3124 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D SBG_2893 gatR; galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor D SBG_2457 gutR; glucitol operon repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor D SBG_3824 yjfQ; putative transcriptional regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor D SBG_3542 yihW; putative DeoR-family transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor C LacI family D SBG_0326 lacI; lactose operon repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D SBG_2003 galS; mgl repressor and galactose ultrainduction factor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SBG_2616 galR; galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SBG_3256 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SBG_3439 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SBG_3595 cytR; transcriptional repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D SBG_0106 fruR; fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D SBG_3878 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D SBG_1253 purR; purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D SBG_3136 gntR; gluconate utilization operon repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SBG_3900 regulatory protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator D SBG_1292 malR; maltose regulon repressor K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein C GntR family D SBG_0678 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D SBG_0633A mngR; Mannosyl-D-glycerate transport/metabolism system repressor K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D SBG_3197 gntR family regulatory protein K03710 K03710; GntR family transcriptional regulator D SBG_1664 fadR; fatty acid-fatty acyl responsive DNA-binding protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D SBG_0146 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SBG_3923 uxuR; uxu operon transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D SBG_1366 putative regulatory protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D SBG_2864 exuR; exu regulon transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D SBG_3278 lldR; putative L-lactate dehydrogenase operon regulator K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator D SBG_2969 putative GntR-family transcriptional regulator K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor D SBG_2026 putative GntR-family transcriptional regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D SBG_3160 putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D SBG_1413 putative regulatory protein K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator D SBG_2419 ygaE; putative transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D SBG_1337 putative regulatory protein K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor C TetR/AcrR family D SBG_0421 acrR; potential acrAB operon repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D SBG_3313 ttk; putative TetR-family transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D SBG_0965 putative transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D SBG_1261 putative TetR-family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SBG_3007 putative transcriptional regulatory protein K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor D SBG_1517 putative transcriptional regulator K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D SBG_1051 putative TetR-family regulatory protein K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D SBG_3617 yijC; putative TetR-family trancriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D SBG_0704 ybiH; hypothetical tetR-family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D SBG_0747 putative tetR-family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D SBG_3429 asnC; regulatory protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D SBG_0815 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SBG_0404 ybaO; hypothetical transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D SBG_1780 sdiA; cell-division regulatory protein K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D SBG_1810 rcsA; colanic acid capsullar biosynthesis activation protein A K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor D SBG_0980 csgD; putative regulatory protein K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D SBG_3961 conserved hypothetical regulatory protein K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides D SBG_3123 malT; MalT regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D SBG_1346 marR; multiple antibiotic resistance protein MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D SBG_1268 slyA; transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D SBG_2438 mprA; putative transcriptional regulator K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D SBG_2534 slyA2; putative regulatory protein K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility C MerR family D SBG_0444 cueR; copper efflux regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D SBG_3022 zntR; putative Zn(II)-responsive regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D SBG_3710 soxR; SoxR protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D SBG_0309 putative MerR-family transcriptional regulatory protein K19592 golS; MerR family transcriptional regulator, gold-responsive activator of gol and ges genes D SBG_1973 yehV; putative transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes C Fur family D SBG_0583 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D SBG_3685 zur; zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D SBG_3656 iclR; acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D SBG_1695 kdgR; transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D SBG_3074 cap; cyclic AMP receptor protein,catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SBG_1501 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D SBG_2319 yfhP; conserved hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D SBG_3811 yjeB; conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family C XRE family D SBG_1432 putative DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D SBG_0720 transcriptional regulator (iron dependant repressor family) K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D SBG_1724 hexR; putative hex-regulon repressor K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D SBG_3623 birA; bifunctional protein: biotin operon repressor and biotin-[acetyl-CoA carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D SBG_3003 fis; Fis DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D SBG_3990 trpR; putative trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D SBG_0319 prpR; propionate catabolism operon regulatory protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D SBG_2933 nlp; Ner-like regulatory protein K07724 ner; Ner family transcriptional regulator D SBG_0095 yabN; putative ABC transporter periplasmic solute binding protein K11925 sgrR; SgrR family transcriptional regulator D SBG_3987 nadR; conserved hypothetical transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D SBG_3345 putative NtrC-family transcriptional regulator K17473 dgaR; sigma-54 dependent transcriptional regulator, dga operon transcriptional activator D SBG_3945 putative transcriptional regulatory protein K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator D SBG_2459 ygaA; putative sigma-54-dependent transriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D SBG_2480 fhlA; transcriptional activator of the formate hydrogenlyase system K15836 fhlA; formate hydrogenlyase transcriptional activator D SBG_0200 yaeG; conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator D SBG_2274 conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator D SBG_0661 modE; putative molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family D SBG_3177 nikR; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D SBG_3598 metJ; repressor of the methionine regulon K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D SBG_0967 putA; proline dehydrogenase (proline oxidase) K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D SBG_1456 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D SBG_0391 bolA; BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D SBG_3510 rfaH; transcriptional activator K05785 rfaH; transcriptional antiterminator RfaH D SBG_2979 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D SBG_0572 nagC; N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor D SBG_1315 putative regulatory protein K15545 mlc; transcriptional regulator of PTS gene D SBG_3275 mtlR; mannitol operon repressor (mannitol repressor protein) K02562 mtlR; mannitol operon repressor D SBG_1533 tyrR; transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D SBG_2332 cadC; transcriptional activator cadC K03765 cadC; transcriptional activator of cad operon D SBG_2497 iagA; invasion protein regulator K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D SBG_2270 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D SBG_1552 pspF; psp operon transcriptional activator PspF K03974 pspF; psp operon transcriptional activator D SBG_1549 pspC; phage shock protein C K03973 pspC; phage shock protein C D SBG_0524 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D SBG_2176 hypothetical phage-related protein K07733 alpA; prophage regulatory protein D SBG_0264 prophage DNA-binding protein K07733 alpA; prophage regulatory protein D SBG_2696 conserved hypothetical protein K07735 algH; putative transcriptional regulator D SBG_0053 caiF; transcriptional activator CaiF K08277 caiF; transcriptional activator CaiF D SBG_0183 dksA; dosage-dependent dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D SBG_0368 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR D SBG_0260 crl; curlin genes transcriptional activator K11926 crl; sigma factor-binding protein Crl D SBG_0108 yabB; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0