+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sphingomonas bisphenolicum

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SBA_ch1_26020 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SBA_ch1_25300 phrA; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SBA_ch1_01810 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SBA_ch1_08210 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SBA_ch1_26000 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SBA_ch1_17280 mutT; NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SBA_ch1_12830 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SBA_ch1_26020 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SBA_ch1_15870 hypothetical protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SBA_ch1_25300 phrA; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SBA_ch1_01810 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SBA_ch1_04210 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SBA_ch1_00910 DNA-3-methyladenine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SBA_ch1_08210 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SBA_ch1_05120 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SBA_ch1_12890 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SBA_ch1_26000 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SBA_ch1_05770 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SBA_ch1_16380 nuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SBA_ch1_27810 xthA1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SBA_ch1_30800 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SBA_pBAR3_0370 xthA1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SBA_ch1_03590 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SBA_ch1_17740 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SBA_ch1_00770 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SBA_ch1_33920 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E SBA_ch1_07650 hypothetical protein K03702 uvrB; excinuclease ABC subunit B E SBA_ch1_26780 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E SBA_ch1_29210 pcrA; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SBA_ch1_00770 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SBA_ch1_17740 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SBA_ch1_13830 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SBA_ch1_13820 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SBA_ch1_09510 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SBA_ch1_01830 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SBA_ch1_30460 mfd_1; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SBA_ch1_05810 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SBA_ch1_25650 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SBA_ch1_06390 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SBA_ch1_17370 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SBA_ch1_25140 DNA-directed DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SBA_ch1_03340 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SBA_ch1_15290 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SBA_ch1_05240 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SBA_ch1_23640 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SBA_ch1_05600 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SBA_ch1_29500 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SBA_ch1_17740 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SBA_ch1_29210 pcrA; DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SBA_ch1_07300 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SBA_pBAR4_0390 hypothetical protein K03111 ssb; single-strand DNA-binding protein E SBA_pBAR3_1030 hypothetical protein K03111 ssb; single-strand DNA-binding protein E SBA_pBAR4_0270 hypothetical protein K03111 ssb; single-strand DNA-binding protein E SBA_ch1_23710 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SBA_ch1_03640 recA; protein RecA K03553 recA; recombination protein RecA E SBA_ch1_07590 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SBA_ch1_07600 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SBA_ch1_13610 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SBA_ch1_15920 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E SBA_ch1_03640 recA; protein RecA K03553 recA; recombination protein RecA E SBA_ch1_34660 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E SBA_ch1_03480 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E SBA_ch1_30440 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SBA_ch1_03590 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SBA_ch1_26760 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SBA_ch1_16000 recR; recombination protein RecR K06187 recR; recombination protein RecR E SBA_ch1_17720 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SBA_ch1_07590 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SBA_ch1_07600 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SBA_ch1_13610 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E SBA_ch1_24420 uvrD; double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SBA_ch1_24430 double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SBA_ch1_13880 HerA helicase-related ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E SBA_ch1_27850 ku_1; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku E SBA_ch1_31670 ku_2; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku E SBA_ch2_2590 ku; non-homologous end joining protein Ku K10979 ku; DNA end-binding protein Ku E SBA_ch1_27280 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SBA_ch1_27820 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SBA_ch1_31630 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SBA_ch2_2580 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SBA_pBAR3_0380 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SBA_ch1_29030 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SBA_ch1_05110 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SBA_ch1_02910 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F SBA_ch1_24880 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F SBA_pBAR3_0350 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SBA_ch1_09450 hupT_1; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F SBA_ch1_27200 hupT_2; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F SBA_ch1_29470 transcriptional regulator K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SBA_ch1_03590 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SBA_ch1_26760 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SBA_ch1_16000 recR; recombination protein RecR K06187 recR; recombination protein RecR F SBA_ch1_17740 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SBA_ch1_07980 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F SBA_ch1_27090 ihfB_1; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta F SBA_ch1_29280 ihfB_2; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta F SBA_pBAR3_1220 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F SBA_ch1_11720 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SBA_ch1_33920 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F SBA_ch1_07650 hypothetical protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SBA_ch1_06200 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SBA_ch1_23060 SOS mutagenesis and repair protein UmuC K03502 umuC; DNA polymerase V D SBA_ch1_23050 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D SBA_ch1_03640 recA; protein RecA K03553 recA; recombination protein RecA D SBA_ch1_23130 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D SBA_ch1_17720 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SBA_ch1_27480 hypothetical protein K14160 imuA; protein ImuA D SBA_ch1_30700 hypothetical protein K14160 imuA; protein ImuA D SBA_ch1_22390 DNA-directed DNA polymerase K14161 imuB; protein ImuB D SBA_ch1_27470 nucleotidyltransferase K14161 imuB; protein ImuB D SBA_ch1_30710 nucleotidyltransferase K14161 imuB; protein ImuB D SBA_ch1_22400 dnaE2-1_1; error-prone DNA polymerase 1 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SBA_ch1_27460 dnaE2-1_2; error-prone DNA polymerase 1 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SBA_ch1_30720 dnaE2-1_3; error-prone DNA polymerase 1 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SBA_ch1_07300 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SBA_pBAR4_0390 hypothetical protein K03111 ssb; single-strand DNA-binding protein D SBA_pBAR3_1030 hypothetical protein K03111 ssb; single-strand DNA-binding protein D SBA_pBAR4_0270 hypothetical protein K03111 ssb; single-strand DNA-binding protein D SBA_ch1_36480 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SBA_ch1_03250 DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D SBA_ch1_05140 DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D SBA_ch1_17280 mutT; NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SBA_ch1_12830 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SBA_ch1_07810 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SBA_ch1_07830 ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024