+D GENES KO
#
KEGG Orthology (KO) - Shewanella benthica
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:sbk00010]
D SHEWBE_1674 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SHEWBE_1283 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D SHEWBE_1454 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SHEWBE_3935 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SHEWBE_2697 gap; Glyceraldehyde-3-phosphate dehydrogenase-like protein K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SHEWBE_2699 cbbGC; Glyceraldehyde-3-phosphate dehydrogenase, chromosomal K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SHEWBE_1453 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SHEWBE_0497 gpmI; phosphoglycero mutase III, cofactor-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D SHEWBE_3839 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SHEWBE_2615 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SHEWBE_2358 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D SHEWBE_0910 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D SHEWBE_0911 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_3745 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SHEWBE_4177 putative Pyruvate dehydrogenase (NADP(+)) K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SHEWBE_3965 frmA; Alcohol dehydrogenase class 3 (Alcohol dehydrogenase class III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SHEWBE_2832 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SHEWBE_1797 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SHEWBE_0824 aldB; aldehyde dehydrogenase B K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D SHEWBE_2350 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SHEWBE_4399 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D SHEWBE_2817 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SHEWBE_3098 putative glucose-6-phosphate 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D SHEWBE_0381 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SHEWBE_2902 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:sbk00020]
D SHEWBE_3179 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D SHEWBE_2047 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D SHEWBE_0920 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D SHEWBE_2370 idh; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D SHEWBE_1843 leuB; 3-isopropylmalate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D SHEWBE_3172 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D SHEWBE_3171 sucB; dihydrolipoamide succinyltransferase, E2 component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_3169 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D SHEWBE_3170 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D SHEWBE_3174 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D SHEWBE_3173 sdhB; succinate dehydrogenase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D SHEWBE_3176 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D SHEWBE_3175 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D SHEWBE_4504 frdA; Fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4503 frdB; Fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4506 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_4505 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_1282 fccA; Fumarate reductase flavoprotein subunit K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D SHEWBE_2839 Fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D SHEWBE_1055 fumC; Fumarate hydratase class II 1 K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D SHEWBE_4231 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SHEWBE_0381 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SHEWBE_0910 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D SHEWBE_0911 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D SHEWBE_3745 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SHEWBE_4177 putative Pyruvate dehydrogenase (NADP(+)) K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:sbk00030]
D SHEWBE_1674 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SHEWBE_2617 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SHEWBE_2618 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D SHEWBE_1985 gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D SHEWBE_0884 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D SHEWBE_1450 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D SHEWBE_1675 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
D SHEWBE_1508 rpiA; ribose 5-phosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D SHEWBE_1677 putative phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D SHEWBE_3919 deoC; 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D SHEWBE_4250 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D SHEWBE_3917 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D SHEWBE_2817 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SHEWBE_4011 prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SHEWBE_2619 edd; 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D SHEWBE_2620 eda; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D SHEWBE_1454 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SHEWBE_1283 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:sbk00040]
D SHEWBE_3504 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D SHEWBE_3462 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_3509 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_0884 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D SHEWBE_3285 Alpha-ketoglutaric semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00051 Fructose and mannose metabolism [PATH:sbk00051]
D SHEWBE_3468 mak; manno(fructo)kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D SHEWBE_0153 rfbK; Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D SHEWBE_2085 putative phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D SHEWBE_0152 cpsB; mannose-1-phosphate guanyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D SHEWBE_1283 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D SHEWBE_1454 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SHEWBE_3935 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:sbk00052]
D SHEWBE_4399 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D SHEWBE_4398 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D SHEWBE_3463 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SHEWBE_3462 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_3509 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_2817 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
C 00053 Ascorbate and aldarate metabolism [PATH:sbk00053]
D SHEWBE_3504 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D SHEWBE_3285 Alpha-ketoglutaric semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00500 Starch and sucrose metabolism [PATH:sbk00500]
D SHEWBE_3462 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_3509 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_1804 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D SHEWBE_1805 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D SHEWBE_3439 Glycosyltransferase-like protein K16150 K16150; glycogen synthase [EC:2.4.1.11]
D SHEWBE_1800 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D SHEWBE_1802 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D SHEWBE_1799 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D SHEWBE_3441 Glycosyl transferase, group 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D SHEWBE_2902 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SHEWBE_1801 glgX; glycogen debranching enzyme K01214 ISA; isoamylase [EC:3.2.1.68]
D SHEWBE_2817 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SHEWBE_1674 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SHEWBE_3468 mak; manno(fructo)kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:sbk00520]
D SHEWBE_3213 nagZ; beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D SHEWBE_2902 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SHEWBE_3468 mak; manno(fructo)kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D SHEWBE_0522 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SHEWBE_3936 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D SHEWBE_0525 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D SHEWBE_1597 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D SHEWBE_2791 putative Phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D SHEWBE_4214 Phosphotransferase enzyme family protein K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D SHEWBE_4213 murU; N-acetylmuramate alpha-1-phosphate uridylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D SHEWBE_1087 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SHEWBE_0341 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SHEWBE_0695 siaA; UDP-N-acetylglucosamine 2-epimerase K08068 siaA; UDP-N-acetylglucosamine 2-epimerase (hydrolysing) [EC:3.2.1.183]
D SHEWBE_0694 siaC; sialic acid synthase (N-acetylneuraminate synthase; N-acetylneuraminic acid synthase) K01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56]
D SHEWBE_3531 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D SHEWBE_3530 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D SHEWBE_3621 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D SHEWBE_3620 pseF; Pseudaminic acid cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D SHEWBE_0693 siaB; N-acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase; CMP-NeuNAc synthetase; CMP-sialic acid synthetase) K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D SHEWBE_2817 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SHEWBE_3462 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_3509 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_3504 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D SHEWBE_4398 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D SHEWBE_3463 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SHEWBE_1674 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SHEWBE_0153 rfbK; Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D SHEWBE_2085 putative phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D SHEWBE_0152 cpsB; mannose-1-phosphate guanyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D SHEWBE_1804 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:sbk00620]
D SHEWBE_2350 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SHEWBE_3745 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SHEWBE_4177 putative Pyruvate dehydrogenase (NADP(+)) K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SHEWBE_0910 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D SHEWBE_0911 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_3377 pflB; pyruvate formate lyase I K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SHEWBE_2832 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SHEWBE_1797 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SHEWBE_3965 frmA; Alcohol dehydrogenase class 3 (Alcohol dehydrogenase class III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SHEWBE_3381 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D SHEWBE_3382 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SHEWBE_2615 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SHEWBE_4465 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SHEWBE_4466 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SHEWBE_3210 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D SHEWBE_0824 aldB; aldehyde dehydrogenase B K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D SHEWBE_1295 ldhA; fermentative D-lactate dehydrogenase, NAD-dependent K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D SHEWBE_2591 gloA; glyoxalase I, Ni-dependent K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D SHEWBE_2550 gloB; putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D SHEWBE_3272 ycbL; putative metal-binding hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D SHEWBE_4084 sfcA; malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D SHEWBE_0929 putative Malate oxidoreductase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D SHEWBE_3816 oadA; Oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D SHEWBE_3815 oadB; Oxaloacetate decarboxylase beta chain 2 K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D SHEWBE_3817 putative oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D SHEWBE_4231 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SHEWBE_2839 Fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D SHEWBE_1055 fumC; Fumarate hydratase class II 1 K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D SHEWBE_4504 frdA; Fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4503 frdB; Fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4506 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_4505 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_1282 fccA; Fumarate reductase flavoprotein subunit K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D SHEWBE_0864 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SHEWBE_0381 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SHEWBE_2358 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D SHEWBE_2833 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_0189 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:sbk00630]
D SHEWBE_2835 aceA; isocitrate lyase K01637 ICL; isocitrate/methylisocitrate lyase [EC:4.1.3.1 4.1.3.30]
D SHEWBE_2350 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SHEWBE_2833 glcB; malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D SHEWBE_4231 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SHEWBE_3179 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D SHEWBE_2047 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D SHEWBE_0920 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_4328 cat; Catalase K03781 katE; catalase [EC:1.11.1.6]
D SHEWBE_4210 Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D SHEWBE_3030 HAD-superfamily hydrolase, subfamily IA K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D SHEWBE_0885 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D SHEWBE_0015 Alanine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SHEWBE_0261 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SHEWBE_3857 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SHEWBE_1361 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D SHEWBE_1359 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_1360 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D SHEWBE_2093 garK; glycerate kinase I K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SHEWBE_2620 eda; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D SHEWBE_0432 Formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SHEWBE_0436 Formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SHEWBE_1308 Formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SHEWBE_0431 fdhB; Formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SHEWBE_0435 fdhB; Formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SHEWBE_0430 Formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D SHEWBE_0434 putative Formate dehydrogenase, C subunit K00127 fdoI; formate dehydrogenase subunit gamma
D SHEWBE_1923 purU; formyltetrahydrofolate hydrolase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:sbk00640]
D SHEWBE_2350 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SHEWBE_1984 conserved protein of unknown function K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D SHEWBE_3381 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D SHEWBE_3382 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SHEWBE_2813 Alpha keto acid dehydrogenase complex, E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D SHEWBE_2812 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D SHEWBE_4196 2-oxoisovalerate dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D SHEWBE_2811 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_3377 pflB; pyruvate formate lyase I K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SHEWBE_0826 yhdH; putative oxidoreductase, Zn-dependent and NAD(P)-binding K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SHEWBE_4465 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SHEWBE_4466 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SHEWBE_3170 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D SHEWBE_3169 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D SHEWBE_2029 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D SHEWBE_2047 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D SHEWBE_2048 putative methyl-cis-aconitic acid hydratase (AcnM) K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117]
D SHEWBE_2049 conserved protein of unknown function K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-]
D SHEWBE_0920 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D SHEWBE_2046 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D SHEWBE_0118 yqhD; alcohol dehydrogenase, NAD(P)-dependent K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:sbk00650]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SHEWBE_2124 putative Trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D SHEWBE_2832 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SHEWBE_3815 oadB; Oxaloacetate decarboxylase beta chain 2 K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D SHEWBE_3174 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D SHEWBE_3173 sdhB; succinate dehydrogenase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D SHEWBE_3176 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D SHEWBE_3175 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D SHEWBE_4504 frdA; Fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4503 frdB; Fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4506 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_4505 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_1282 fccA; Fumarate reductase flavoprotein subunit K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D SHEWBE_4313 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D SHEWBE_3377 pflB; pyruvate formate lyase I K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SHEWBE_3745 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SHEWBE_4177 putative Pyruvate dehydrogenase (NADP(+)) K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SHEWBE_1975 liuE; 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D SHEWBE_1974 atoD; acetoacetyl-CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D SHEWBE_1973 atoA; acetoacetyl-CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D SHEWBE_3060 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SHEWBE_0020 ilvG; Acetolactate synthase isozyme 2 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SHEWBE_3061 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D SHEWBE_0019 Acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:sbk00660]
D SHEWBE_3060 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SHEWBE_0020 ilvG; Acetolactate synthase isozyme 2 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SHEWBE_3061 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D SHEWBE_0019 Acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D SHEWBE_3170 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D SHEWBE_3169 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D SHEWBE_0186 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D SHEWBE_0185 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D SHEWBE_0188 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:sbk00562]
D SHEWBE_3409 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D SHEWBE_2029 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D SHEWBE_3935 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:sbk00190]
D SHEWBE_3357 nuoA; NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D SHEWBE_3358 nuoB; NADH:ubiquinone oxidoreductase, chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D SHEWBE_3359 nuoC; NADH:ubiquinone oxidoreductase, chain C,D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D SHEWBE_3360 ATP synthase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D SHEWBE_3361 nuoF; NADH:ubiquinone oxidoreductase, chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D SHEWBE_3362 NADH-quinone oxidoreductase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D SHEWBE_3363 nuoH; NADH:ubiquinone oxidoreductase, membrane subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D SHEWBE_3364 nuoI; NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D SHEWBE_3365 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D SHEWBE_3366 nuoK; NADH:ubiquinone oxidoreductase, membrane subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D SHEWBE_3367 nuoL; NADH:ubiquinone oxidoreductase, membrane subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D SHEWBE_3368 nuoM; NADH:ubiquinone oxidoreductase, membrane subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D SHEWBE_3369 nuoN; NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D SHEWBE_3174 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D SHEWBE_3173 sdhB; succinate dehydrogenase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D SHEWBE_3176 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D SHEWBE_3175 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D SHEWBE_4504 frdA; Fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4503 frdB; Fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4506 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_4505 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_1157 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D SHEWBE_1158 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D SHEWBE_1159 petC; Cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D SHEWBE_0758 cyoE; Protoheme IX farnesyltransferase 1 K02257 COX10; heme o synthase [EC:2.5.1.141]
D SHEWBE_0547 Cytochrome C oxidase subunit IV K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D SHEWBE_0544 Cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D SHEWBE_0545 putative cytochrome-C oxidase subunit III oxidoreductase protein K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D SHEWBE_0765 Cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D SHEWBE_0543 coxN; Alternative cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D SHEWBE_0768 ctaD; Cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D SHEWBE_0542 Cytochrome C oxidase K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D SHEWBE_0769 Cytochrome c oxidase subunit 2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D SHEWBE_0767 ctaG; Cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D SHEWBE_0759 putative Cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D SHEWBE_2682 ccoN; Cbb3-type cytochrome c oxidase subunit CcoN1 K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D SHEWBE_2683 Cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D SHEWBE_2684 Cbb3-type cytochrome oxidase, subunit 3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D SHEWBE_2685 ccoP; Cbb3-type cytochrome c oxidase subunit CcoP2 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D SHEWBE_3635 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D SHEWBE_3634 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D SHEWBE_3633 Cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D SHEWBE_0530 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D SHEWBE_0528 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D SHEWBE_0529 atpG; membrane-bound ATP synthase, F1 sector, gamma-subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D SHEWBE_0531 atpH; F1 sector of membrane-bound ATP synthase, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D SHEWBE_0527 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D SHEWBE_0534 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SHEWBE_0532 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D SHEWBE_0533 atpE; membrane-bound ATP synthase, F0 sector, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D SHEWBE_2658 ppaC; putative manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:sbk00710]
D SHEWBE_1453 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SHEWBE_2697 gap; Glyceraldehyde-3-phosphate dehydrogenase-like protein K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SHEWBE_2699 cbbGC; Glyceraldehyde-3-phosphate dehydrogenase, chromosomal K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SHEWBE_1454 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SHEWBE_1283 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D SHEWBE_1450 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D SHEWBE_1508 rpiA; ribose 5-phosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D SHEWBE_1177 prkB; phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19]
D SHEWBE_3935 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SHEWBE_0884 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D SHEWBE_1675 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
D SHEWBE_0864 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SHEWBE_0381 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SHEWBE_0929 putative Malate oxidoreductase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D SHEWBE_4231 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:sbk00720]
D SHEWBE_3745 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SHEWBE_4177 putative Pyruvate dehydrogenase (NADP(+)) K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SHEWBE_2358 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D SHEWBE_0864 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SHEWBE_4231 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SHEWBE_2839 Fumarate hydratase class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D SHEWBE_1055 fumC; Fumarate hydratase class II 1 K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D SHEWBE_3174 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D SHEWBE_3173 sdhB; succinate dehydrogenase, iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D SHEWBE_3176 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D SHEWBE_3175 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D SHEWBE_4504 frdA; Fumarate reductase flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4503 frdB; Fumarate reductase iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D SHEWBE_4506 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_4505 frdC; Fumarate reductase cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D SHEWBE_1282 fccA; Fumarate reductase flavoprotein subunit K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D SHEWBE_3169 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D SHEWBE_3170 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_2370 idh; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D SHEWBE_0920 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D SHEWBE_4465 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SHEWBE_4466 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SHEWBE_0985 fhs; Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D SHEWBE_2111 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D SHEWBE_4429 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D SHEWBE_3382 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SHEWBE_3381 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D SHEWBE_2350 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:sbk00680]
D SHEWBE_3965 frmA; Alcohol dehydrogenase class 3 (Alcohol dehydrogenase class III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SHEWBE_3964 frmC; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D SHEWBE_0432 Formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SHEWBE_0436 Formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SHEWBE_1308 Formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SHEWBE_0431 fdhB; Formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SHEWBE_0435 fdhB; Formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SHEWBE_0430 Formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma
D SHEWBE_0434 putative Formate dehydrogenase, C subunit K00127 fdoI; formate dehydrogenase subunit gamma
D SHEWBE_3857 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SHEWBE_0015 Alanine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SHEWBE_4210 Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D SHEWBE_3839 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SHEWBE_0864 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SHEWBE_4231 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SHEWBE_1454 fda; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SHEWBE_1283 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D SHEWBE_3880 torD; Chaperone protein TorD K03533 torD; TorA specific chaperone
D SHEWBE_4098 putative Glutamate synthase K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21]
D SHEWBE_3381 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D SHEWBE_3382 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SHEWBE_2350 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SHEWBE_2358 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D SHEWBE_0497 gpmI; phosphoglycero mutase III, cofactor-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D SHEWBE_2788 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D SHEWBE_3914 Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:sbk00910]
D SHEWBE_3134 nrtP; Nitrate/nitrite transporter NrtP K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D SHEWBE_2494 napA; nitrate reductase, periplasmic, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D SHEWBE_2495 napB; Periplasmic nitrate reductase, electron transfer subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D SHEWBE_4351 napB; Periplasmic nitrate reductase, electron transfer subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D SHEWBE_3136 nirB; nitrite reductase, large subunit, NAD(P)H-binding K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D SHEWBE_3135 nirD; nitrite reductase, NAD(P)H-binding, small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D SHEWBE_1531 nrfA; nitrite reductase, formate-dependent, cytochrome K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D SHEWBE_1743 nrfA; Cytochrome c-552 K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D SHEWBE_1654 hcp; hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D SHEWBE_2398 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D SHEWBE_0261 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SHEWBE_1608 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D SHEWBE_4176 putative Dihydropyrimidine dehydrogenase (NADP(+)) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D SHEWBE_1607 gltD; glutamate synthase small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D SHEWBE_3747 ybcF; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D SHEWBE_2915 can; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:sbk00920]
D SHEWBE_3488 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D SHEWBE_3490 cysD; sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D SHEWBE_3484 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D SHEWBE_0362 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D SHEWBE_4294 cysH; 3'-phosphoadenosine 5'-phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D SHEWBE_4296 cysJ; sulfite reductase, alpha subunit, flavoprotein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D SHEWBE_4295 cysI; sulfite reductase, beta subunit, NAD(P)-binding, heme-binding K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D SHEWBE_3051 Mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D SHEWBE_0677 glpE; thiosulfate:cyanide sulfurtransferase (rhodanese) K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D SHEWBE_3407 nifP; putative serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SHEWBE_0024 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SHEWBE_2606 Cysteine synthase/cystathionine beta-synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D SHEWBE_3355 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D SHEWBE_2026 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D SHEWBE_4431 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D SHEWBE_3096 dmdC; 3-methylmercaptopropionyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D SHEWBE_2777 Acyl-CoA dehydrogenase family protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:sbk00061]
D SHEWBE_4465 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SHEWBE_4466 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SHEWBE_3020 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D SHEWBE_0233 putative Acyl carrier protein K02078 acpP; acyl carrier protein
D SHEWBE_0234 acpP; Acyl carrier protein 2 K02078 acpP; acyl carrier protein
D SHEWBE_3022 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SHEWBE_4195 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SHEWBE_3023 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SHEWBE_3287 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SHEWBE_2225 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SHEWBE_0245 3-oxoacyl-(Acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SHEWBE_3019 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SHEWBE_0248 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SHEWBE_3021 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_0247 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_2034 3-ketoacyl-(Acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_2406 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D SHEWBE_1940 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SHEWBE_2124 putative Trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D SHEWBE_2463 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_3266 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0227 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0474 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_1341 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:sbk00071]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_2208 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SHEWBE_0596 fadA; 3-ketoacyl-CoA thiolase (Fatty oxidation complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SHEWBE_1721 putative Acyl-CoA dehydrogenase-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D SHEWBE_2556 fadE; acyl coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D SHEWBE_2614 fadE; acyl coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D SHEWBE_3764 fadE; Acyl-coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D SHEWBE_4197 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D SHEWBE_2463 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_3266 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0227 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0474 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_1341 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_3965 frmA; Alcohol dehydrogenase class 3 (Alcohol dehydrogenase class III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SHEWBE_2832 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SHEWBE_1797 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:sbk00074]
D SHEWBE_1635 acpS; holo-[acyl-carrier-protein] synthase 1 K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D SHEWBE_3020 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D SHEWBE_0233 putative Acyl carrier protein K02078 acpP; acyl carrier protein
D SHEWBE_0234 acpP; Acyl carrier protein 2 K02078 acpP; acyl carrier protein
D SHEWBE_3022 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SHEWBE_4195 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:sbk00561]
D SHEWBE_2093 garK; glycerate kinase I K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SHEWBE_0182 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D SHEWBE_0773 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D SHEWBE_3024 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D SHEWBE_1571 plsY; 1-acyl glycerol-3-phosphate synthetase component K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SHEWBE_0993 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D SHEWBE_3038 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:sbk00564]
D SHEWBE_0493 gpsA; glycerol-3-phosphate dehydrogenase (NAD+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D SHEWBE_1307 FAD-dependent glycerol-3-phosphate dehydrogenase, family protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D SHEWBE_0773 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D SHEWBE_1571 plsY; 1-acyl glycerol-3-phosphate synthetase component K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SHEWBE_0993 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D SHEWBE_3038 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D SHEWBE_4148 Phospholipase A1 (fragment) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D SHEWBE_0665 putative Lysophospholipase L2 pldB K01048 pldB; lysophospholipase [EC:3.1.1.5]
D SHEWBE_1137 putative Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D SHEWBE_1934 cdsA; CDP-diglyceride synthase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D SHEWBE_2774 pssA; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SHEWBE_2478 conserved membrane protein of unknown function, containing CDP-alcohol phosphatidyltransferase domain K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SHEWBE_4061 putative CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SHEWBE_1142 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D SHEWBE_2422 pgsA; phosphatidylglycerophosphate synthetase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D SHEWBE_3849 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D SHEWBE_2807 cls; cardiolipin synthase 1 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D SHEWBE_0445 Phopholipase D domain protein K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:sbk00565]
D SHEWBE_4148 Phospholipase A1 (fragment) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D SHEWBE_4148 Phospholipase A1 (fragment) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D SHEWBE_4148 Phospholipase A1 (fragment) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:sbk00592]
D SHEWBE_4148 Phospholipase A1 (fragment) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D SHEWBE_2208 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SHEWBE_0596 fadA; 3-ketoacyl-CoA thiolase (Fatty oxidation complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:sbk01040]
D SHEWBE_0358 Acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D SHEWBE_3394 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D SHEWBE_1993 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:sbk00230]
D SHEWBE_1128 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D SHEWBE_0363 nudE; ADP-ribose diphosphatase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D SHEWBE_3917 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D SHEWBE_2817 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SHEWBE_4011 prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SHEWBE_2242 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D SHEWBE_0051 purD; phosphoribosylamine--glycine ligase (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase) K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D SHEWBE_2322 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D SHEWBE_3636 purL; phosphoribosylformyl-glycineamide synthetase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D SHEWBE_2323 purM; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D SHEWBE_3801 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D SHEWBE_2446 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D SHEWBE_2366 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D SHEWBE_0050 purH; bifunctional protein [Includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SHEWBE_3231 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D SHEWBE_3659 putative 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D SHEWBE_3064 ushA; bifunctional UDP-sugar hydrolase and 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D SHEWBE_3834 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D SHEWBE_3221 gsk; inosine/guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D SHEWBE_3875 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SHEWBE_3888 Purine nucleoside phosphorylase DeoD-type (fragment) K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SHEWBE_3916 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SHEWBE_1038 yaiE; conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D SHEWBE_4065 yfiH; conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D SHEWBE_1241 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D SHEWBE_3641 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D SHEWBE_3398 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SHEWBE_1439 Non-canonical purine NTP phosphatase K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D SHEWBE_1770 yggV; dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D SHEWBE_2512 xpt; Xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D SHEWBE_3640 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D SHEWBE_3729 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D SHEWBE_0099 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D SHEWBE_0216 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D SHEWBE_2793 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SHEWBE_2794 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SHEWBE_2187 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D SHEWBE_2829 Deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1]
D SHEWBE_2828 deoxyribonucleoside 5'-monophosphatase (fragment) K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D SHEWBE_0218 spoT; bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D SHEWBE_4496 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D SHEWBE_3842 relA; (p)ppGpp synthetase I/GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D SHEWBE_1612 Guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D SHEWBE_4518 putative Adenylate cyclase CyaA K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D SHEWBE_0114 cyaB; Adenylate cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D SHEWBE_2726 purA; Adenylosuccinate synthetase 2 K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SHEWBE_1097 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SHEWBE_4088 add; Adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D SHEWBE_1852 ygdH; conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D SHEWBE_3091 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D SHEWBE_3223 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D SHEWBE_3841 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D SHEWBE_1130 cpdA; cyclic 3',5'-adenosine monophosphate phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D SHEWBE_4220 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D SHEWBE_3484 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D SHEWBE_3488 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D SHEWBE_3490 cysD; sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D SHEWBE_3747 ybcF; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:sbk00240]
D SHEWBE_3942 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SHEWBE_3943 carA; carbamoyl-phosphate synthase, small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SHEWBE_3735 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D SHEWBE_3734 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D SHEWBE_4128 pyrC; dihydro-orotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D SHEWBE_3881 pyrDA; Dihydroorotate dehydrogenase A (fumarate) K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D SHEWBE_2399 pyrD; dihydro-orotate oxidase, FMN-linked K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D SHEWBE_0204 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D SHEWBE_2780 pyrF; orotidine-5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D SHEWBE_1931 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D SHEWBE_3398 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SHEWBE_3841 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D SHEWBE_0954 yhdE; putative septum formation protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D SHEWBE_2177 ygjP; putative metal dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D SHEWBE_3840 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D SHEWBE_2785 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D SHEWBE_3048 udk; uridine/cytidine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D SHEWBE_3659 putative 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D SHEWBE_3064 ushA; bifunctional UDP-sugar hydrolase and 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D SHEWBE_3834 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D SHEWBE_0067 yjjG; dUMP phosphatase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D SHEWBE_0034 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D SHEWBE_1038 yaiE; conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D SHEWBE_2325 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D SHEWBE_3091 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D SHEWBE_2733 yeiI; putative kinase K16328 psuK; pseudouridine kinase [EC:2.7.1.83]
D SHEWBE_2734 yeiN; conserved hypothetical protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D SHEWBE_2057 rihA; ribonucleoside hydrolase 1 K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-]
D SHEWBE_1852 ygdH; conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D SHEWBE_3014 cdd; Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D SHEWBE_2490 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D SHEWBE_2187 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D SHEWBE_2793 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SHEWBE_2794 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SHEWBE_2828 deoxyribonucleoside 5'-monophosphatase (fragment) K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D SHEWBE_1334 Uncharacterized deaminase in luxG 3'region K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D SHEWBE_3045 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D SHEWBE_0201 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SHEWBE_3918 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D SHEWBE_1972 tdk; thymidine kinase/deoxyuridine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D SHEWBE_1618 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D SHEWBE_3748 hyuA; D-stereospecific phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:sbk00250]
D SHEWBE_2787 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SHEWBE_1624 nadB; quinolinate synthase, L-aspartate oxidase (B protein) subunit K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D SHEWBE_2798 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D SHEWBE_2482 iaaA; isoaspartyl dipeptidase with L-asparaginase activity K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D SHEWBE_2320 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D SHEWBE_3528 putative Asparagine synthetase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D SHEWBE_2827 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SHEWBE_0015 Alanine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SHEWBE_2635 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SHEWBE_1399 conserved protein of unknown function, containing Formate/glycerate dehydrogenase catalytic domain-like K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SHEWBE_2666 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D SHEWBE_0869 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D SHEWBE_2726 purA; Adenylosuccinate synthetase 2 K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SHEWBE_1097 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SHEWBE_2366 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D SHEWBE_3735 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D SHEWBE_3734 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D SHEWBE_4313 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D SHEWBE_1608 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D SHEWBE_4176 putative Dihydropyrimidine dehydrogenase (NADP(+)) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D SHEWBE_1607 gltD; glutamate synthase small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D SHEWBE_2398 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D SHEWBE_1221 Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D SHEWBE_0261 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SHEWBE_3942 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SHEWBE_3943 carA; carbamoyl-phosphate synthase, small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SHEWBE_1762 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D SHEWBE_0522 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SHEWBE_2242 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:sbk00260]
D SHEWBE_1287 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SHEWBE_1666 thrA; fused aspartokinase I; homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D SHEWBE_4430 metL; fused aspartokinase II; homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D SHEWBE_2236 usg; putative semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SHEWBE_1667 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D SHEWBE_1668 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D SHEWBE_1786 ltaE; L-allo-threonine aldolase, PLP-dependent K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D SHEWBE_3857 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SHEWBE_0015 Alanine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SHEWBE_4210 Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D SHEWBE_2093 garK; glycerate kinase I K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SHEWBE_0497 gpmI; phosphoglycero mutase III, cofactor-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D SHEWBE_2788 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D SHEWBE_3914 Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D SHEWBE_0680 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D SHEWBE_0679 tdh; threonine 3-dehydrogenase, NAD(P)-binding K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D SHEWBE_1361 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D SHEWBE_1359 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_1360 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D SHEWBE_2774 pssA; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SHEWBE_2478 conserved membrane protein of unknown function, containing CDP-alcohol phosphatidyltransferase domain K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SHEWBE_4061 putative CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SHEWBE_3214 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D SHEWBE_0016 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D SHEWBE_3254 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D SHEWBE_3253 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:sbk00270]
D SHEWBE_3407 nifP; putative serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SHEWBE_0024 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SHEWBE_2606 Cysteine synthase/cystathionine beta-synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D SHEWBE_3355 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D SHEWBE_2382 metC; cystathionine beta-lyase, PLP-dependent K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SHEWBE_1368 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D SHEWBE_4099 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D SHEWBE_1449 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D SHEWBE_2432 Adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D SHEWBE_2953 conserved protein of unknown function, might be ATP-binding protein K00797 speE; spermidine synthase [EC:2.5.1.16]
D SHEWBE_1231 speE; Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D SHEWBE_1605 pfs; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D SHEWBE_4065 yfiH; conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D SHEWBE_0471 mtnC; Enolase-phosphatase E1 K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D SHEWBE_2696 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SHEWBE_2139 mgl; L-methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D SHEWBE_2389 yebR; conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D SHEWBE_3010 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SHEWBE_3976 luxS; S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D SHEWBE_1287 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SHEWBE_1666 thrA; fused aspartokinase I; homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D SHEWBE_4430 metL; fused aspartokinase II; homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D SHEWBE_2236 usg; putative semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SHEWBE_1667 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D SHEWBE_2026 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D SHEWBE_4431 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D SHEWBE_1747 metY; homocysteine synthase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D SHEWBE_0018 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_0123 ilvE; Branched-chain-amino-acid transaminase 1 K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_3805 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D SHEWBE_4361 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D SHEWBE_2787 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SHEWBE_3051 Mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D SHEWBE_4231 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SHEWBE_3214 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D SHEWBE_2920 cysM; Cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D SHEWBE_2788 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:sbk00280]
D SHEWBE_0018 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_0123 ilvE; Branched-chain-amino-acid transaminase 1 K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_2363 ldh; Leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D SHEWBE_2813 Alpha keto acid dehydrogenase complex, E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D SHEWBE_2812 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D SHEWBE_4196 2-oxoisovalerate dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D SHEWBE_2811 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_1721 putative Acyl-CoA dehydrogenase-like protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D SHEWBE_1982 mmgC; Acyl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SHEWBE_2208 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SHEWBE_0596 fadA; 3-ketoacyl-CoA thiolase (Fatty oxidation complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SHEWBE_2033 NAD-dependent L-serine dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D SHEWBE_2029 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D SHEWBE_1979 putative Acetyl-CoA carboxylase, biotin carboxylase K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D SHEWBE_1981 3-methylcrotonyl CoA carboxylase, beta subunit K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D SHEWBE_1980 Enoyl-CoA hydratase/isomerase family protein K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D SHEWBE_1975 liuE; 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D SHEWBE_1974 atoD; acetoacetyl-CoA transferase, alpha subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D SHEWBE_1973 atoA; acetoacetyl-CoA transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:sbk00290]
D SHEWBE_0016 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D SHEWBE_0186 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D SHEWBE_0185 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D SHEWBE_0188 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D SHEWBE_3060 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SHEWBE_0020 ilvG; Acetolactate synthase isozyme 2 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SHEWBE_3061 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D SHEWBE_0019 Acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D SHEWBE_0022 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D SHEWBE_0017 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D SHEWBE_0018 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_0123 ilvE; Branched-chain-amino-acid transaminase 1 K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_2363 ldh; Leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D SHEWBE_2173 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D SHEWBE_2827 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SHEWBE_0189 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:sbk00300]
D SHEWBE_1287 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SHEWBE_1666 thrA; fused aspartokinase I; homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D SHEWBE_4430 metL; fused aspartokinase II; homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D SHEWBE_2236 usg; putative semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SHEWBE_2926 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D SHEWBE_3944 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D SHEWBE_1925 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D SHEWBE_1166 astC; Succinylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D SHEWBE_2911 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D SHEWBE_4515 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D SHEWBE_4516 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D SHEWBE_0176 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D SHEWBE_0175 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:sbk00310]
D SHEWBE_3171 sucB; dihydrolipoamide succinyltransferase, E2 component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_4197 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_4313 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:sbk00220]
D SHEWBE_0868 argF; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D SHEWBE_0869 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D SHEWBE_1762 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D SHEWBE_0261 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SHEWBE_3942 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SHEWBE_3943 carA; carbamoyl-phosphate synthase, small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SHEWBE_3747 ybcF; putative carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D SHEWBE_2398 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D SHEWBE_2787 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SHEWBE_2827 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SHEWBE_0196 argA; fused acetylglutamate kinase homolog (inactive); amino acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D SHEWBE_0867 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D SHEWBE_0866 argC; N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D SHEWBE_1166 astC; Succinylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D SHEWBE_0865 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:sbk00330]
D SHEWBE_2490 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D SHEWBE_2431 speA; biosynthetic arginine decarboxylase, PLP-binding K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D SHEWBE_2433 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D SHEWBE_2953 conserved protein of unknown function, might be ATP-binding protein K00797 speE; spermidine synthase [EC:2.5.1.16]
D SHEWBE_1231 speE; Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
D SHEWBE_2432 Adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D SHEWBE_1167 astA; arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D SHEWBE_3218 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D SHEWBE_1168 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D SHEWBE_2814 astE; Succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D SHEWBE_1773 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D SHEWBE_1221 Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D SHEWBE_3955 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D SHEWBE_3954 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D SHEWBE_0252 Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D SHEWBE_2787 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SHEWBE_3282 conserved protein of unknown function, might belong to Proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
C 00340 Histidine metabolism [PATH:sbk00340]
D SHEWBE_2454 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D SHEWBE_2447 hisI; fused phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D SHEWBE_2449 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D SHEWBE_2450 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D SHEWBE_2448 hisF; imidazole glycerol phosphate synthase, catalytic subunit with HisH K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D SHEWBE_2451 hisB; fused histidinol-phosphatase; imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D SHEWBE_2452 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SHEWBE_2453 hisD; bifunctional histidinal dehydrogenase and histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D SHEWBE_0239 putative Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D SHEWBE_0457 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D SHEWBE_0458 hutU; Urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D SHEWBE_0460 hutI; Imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D SHEWBE_4481 Arginase family protein K01479 hutG; formiminoglutamase [EC:3.5.3.8]
D SHEWBE_1046 urdA; Urocanate reductase K17363 urdA; urocanate reductase [EC:1.3.99.33]
C 00350 Tyrosine metabolism [PATH:sbk00350]
D SHEWBE_2787 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SHEWBE_2452 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SHEWBE_2696 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SHEWBE_3086 melA; Protein MelA K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D SHEWBE_2759 hmgA; Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D SHEWBE_3456 maiA; putative maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D SHEWBE_3458 Fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D SHEWBE_3965 frmA; Alcohol dehydrogenase class 3 (Alcohol dehydrogenase class III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SHEWBE_2832 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SHEWBE_1797 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SHEWBE_4313 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:sbk00360]
D SHEWBE_3461 phhA; Phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D SHEWBE_2787 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SHEWBE_2452 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SHEWBE_2696 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SHEWBE_3086 melA; Protein MelA K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
C 00380 Tryptophan metabolism [PATH:sbk00380]
D SHEWBE_3171 sucB; dihydrolipoamide succinyltransferase, E2 component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_4197 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_4328 cat; Catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:sbk00400]
D SHEWBE_2356 aroH; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SHEWBE_4162 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SHEWBE_1652 aroF; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SHEWBE_0878 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D SHEWBE_4464 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D SHEWBE_0632 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D SHEWBE_0877 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D SHEWBE_2786 aroA; 5-enolpyruvylshikimate-3-phosphate synthetase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D SHEWBE_2218 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D SHEWBE_3249 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D SHEWBE_3252 trpC; fused indole-3-glycerolphosphate synthetase; N-(5-phosphoribosyl)anthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D SHEWBE_3254 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D SHEWBE_3253 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D SHEWBE_1653 tyrA; fused chorismate mutase T; prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D SHEWBE_1656 Chorismate mutase/prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D SHEWBE_2787 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SHEWBE_2452 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SHEWBE_2696 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SHEWBE_3461 phhA; Phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:sbk00410]
D SHEWBE_1247 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D SHEWBE_3748 hyuA; D-stereospecific phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SHEWBE_2029 mmsA; Methylmalonate-semialdehyde dehydrogenase [acylating] K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:sbk00430]
D SHEWBE_3089 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SHEWBE_2635 ald; Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SHEWBE_1399 conserved protein of unknown function, containing Formate/glycerate dehydrogenase catalytic domain-like K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SHEWBE_2398 gdhB; NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D SHEWBE_3382 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SHEWBE_3381 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
D SHEWBE_2475 conserved protein of unknown function, containing conserved domain of Pyridoxal phosphate-dependent transferase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
C 00450 Selenocompound metabolism [PATH:sbk00450]
D SHEWBE_4431 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D SHEWBE_2382 metC; cystathionine beta-lyase, PLP-dependent K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SHEWBE_1368 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D SHEWBE_4099 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D SHEWBE_2139 mgl; L-methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D SHEWBE_1436 sufS; selenocysteine lyase, PLP-dependent K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D SHEWBE_2634 trxB; thioredoxin reductase 1 K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D SHEWBE_3741 ygfK; putative oxidoreductase, Fe-S subunit K12527 ygfK; putative selenate reductase [EC:1.97.1.9]
D SHEWBE_3731 putative xanthine/hypoxanthine oxidase: molybdopterin-binding subunit; Fe-S binding subunit K12528 xdhD; putative selenate reductase molybdopterin-binding subunit
D SHEWBE_3732 ygfM; putative oxidoreductase K12529 ygfM; putative selenate reductase FAD-binding subunit
D SHEWBE_3488 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D SHEWBE_3490 cysD; sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D SHEWBE_0359 selD; selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D SHEWBE_3050 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:sbk00460]
D SHEWBE_3089 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SHEWBE_2798 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D SHEWBE_2482 iaaA; isoaspartyl dipeptidase with L-asparaginase activity K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D SHEWBE_3857 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:sbk00470]
D SHEWBE_1112 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D SHEWBE_2498 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SHEWBE_3568 putative D-alanine--D-alanine ligase Ddl K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SHEWBE_1762 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D SHEWBE_0355 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D SHEWBE_0173 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SHEWBE_4515 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D SHEWBE_4516 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D SHEWBE_3282 conserved protein of unknown function, might belong to Proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D SHEWBE_3284 conserved protein of unknown function,might belong to Proline racemase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8]
D SHEWBE_3283 dapA; Dihydrodipicolinate synthase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22]
D SHEWBE_3285 Alpha-ketoglutaric semialdehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26]
C 00480 Glutathione metabolism [PATH:sbk00480]
D SHEWBE_3089 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SHEWBE_0580 ybgL; putative lactam utilization protein, UPF0271 family K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D SHEWBE_0582 ybgJ; putative hydrolase subunit K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D SHEWBE_0581 ybgK; putative hydrolase subunit K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D SHEWBE_3805 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D SHEWBE_4361 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D SHEWBE_3961 putative Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SHEWBE_4170 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SHEWBE_2043 Cytosol aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SHEWBE_1255 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D SHEWBE_2392 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SHEWBE_1519 Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SHEWBE_3962 pepD; aminoacyl-histidine dipeptidase (peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D SHEWBE_3058 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_4078 putative glutathione S-transferase protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_4142 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_0116 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_0719 gst; Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_1989 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_0713 gor; glutathione oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D SHEWBE_2370 idh; isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D SHEWBE_1985 gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D SHEWBE_2617 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SHEWBE_1807 gpo; Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D SHEWBE_0732 Peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D SHEWBE_2953 conserved protein of unknown function, might be ATP-binding protein K00797 speE; spermidine synthase [EC:2.5.1.16]
D SHEWBE_1231 speE; Polyamine aminopropyltransferase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:sbk00540]
D SHEWBE_1941 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D SHEWBE_0166 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D SHEWBE_1939 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D SHEWBE_2108 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D SHEWBE_1942 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D SHEWBE_3200 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D SHEWBE_1079 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D SHEWBE_3997 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D SHEWBE_1078 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D SHEWBE_2918 kdsB; 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D SHEWBE_0684 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D SHEWBE_4303 lpxL; Lipid A biosynthesis lauroyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D SHEWBE_2445 lpxM; Lipid A biosynthesis myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D SHEWBE_2623 Phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D SHEWBE_0685 kdkA; 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D SHEWBE_3346 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D SHEWBE_0696 rfaE; fused heptose 7-phosphate kinase; heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D SHEWBE_2257 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:sbk00541]
D SHEWBE_3462 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_3509 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SHEWBE_3463 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SHEWBE_3504 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D SHEWBE_3481 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SHEWBE_3522 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SHEWBE_3523 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SHEWBE_0687 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SHEWBE_3520 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SHEWBE_0688 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SHEWBE_3521 rmlD; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SHEWBE_3619 putative dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SHEWBE_0686 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SHEWBE_0153 rfbK; Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D SHEWBE_2085 putative phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D SHEWBE_0152 cpsB; mannose-1-phosphate guanyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D SHEWBE_0525 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D SHEWBE_3531 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D SHEWBE_3530 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D SHEWBE_0695 siaA; UDP-N-acetylglucosamine 2-epimerase K08068 siaA; UDP-N-acetylglucosamine 2-epimerase (hydrolysing) [EC:3.2.1.183]
D SHEWBE_0694 siaC; sialic acid synthase (N-acetylneuraminate synthase; N-acetylneuraminic acid synthase) K01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56]
D SHEWBE_3621 pseB; UDP-N-acetylglucosamine 4,6-dehydratase (inverting) K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D SHEWBE_3620 pseF; Pseudaminic acid cytidylyltransferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
C 00550 Peptidoglycan biosynthesis [PATH:sbk00550]
D SHEWBE_1087 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SHEWBE_0341 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SHEWBE_0170 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D SHEWBE_0173 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SHEWBE_0176 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D SHEWBE_2498 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SHEWBE_3568 putative D-alanine--D-alanine ligase Ddl K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SHEWBE_0175 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D SHEWBE_1933 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D SHEWBE_1574 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SHEWBE_0174 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SHEWBE_0171 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D SHEWBE_0871 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SHEWBE_1261 mrcB; fused glycosyl transferase; transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D SHEWBE_4036 mrdA; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D SHEWBE_0177 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D SHEWBE_4041 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SHEWBE_2776 Penicillin-binding protein 4 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D SHEWBE_2908 conserved protein of unknown function, containing Penicillin binding protein transglycosylase domain K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
C 00552 Teichoic acid biosynthesis [PATH:sbk00552]
D SHEWBE_1574 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:sbk00543]
D SHEWBE_3498 Membrane bound O-acyl transferase MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D SHEWBE_3407 nifP; putative serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SHEWBE_0024 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:sbk00730]
D SHEWBE_2566 thiC; thiamin (pyrimidine moiety) biosynthesis protein K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D SHEWBE_2567 thiE; Thiamine-phosphate synthase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D SHEWBE_2568 thiF; thiamin (thiazole moiety) biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D SHEWBE_3405 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SHEWBE_4452 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SHEWBE_1836 thiI; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SHEWBE_2571 thiH; thiamin biosynthesis ThiGH complex subunit K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D SHEWBE_1831 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D SHEWBE_2570 thiG; thiamin biosynthesis ThiGH complex subunit K03149 thiG; thiazole synthase [EC:2.8.1.10]
D SHEWBE_3850 thiL; thiamin-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D SHEWBE_1143 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D SHEWBE_4362 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_0062 Alkaline phosphatase (fragment) K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_1591 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_3223 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:sbk00740]
D SHEWBE_2190 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D SHEWBE_3853 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D SHEWBE_3855 ribD; fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D SHEWBE_4512 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D SHEWBE_0397 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D SHEWBE_3852 ribH; 6,7-dimethyl-8-ribityllumazine synthase (Lumazine synthase)(riboflavin synthase beta chain) K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D SHEWBE_2626 ribC; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D SHEWBE_3854 ribE; Riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D SHEWBE_1695 ribF; bifunctional riboflavin kinase and FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D SHEWBE_0072 fre; flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D SHEWBE_1128 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D SHEWBE_1240 ubiX; Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:sbk00750]
D SHEWBE_2434 pdxH; pyridoxine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D SHEWBE_1452 epd; D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D SHEWBE_2235 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D SHEWBE_2788 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D SHEWBE_4217 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D SHEWBE_1634 pdxJ; Pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D SHEWBE_1668 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:sbk00760]
D SHEWBE_1624 nadB; quinolinate synthase, L-aspartate oxidase (B protein) subunit K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D SHEWBE_2810 nadA; quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D SHEWBE_0905 nadC; Nicotinate-nucleotide pyrophosphorylase [carboxylating] K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D SHEWBE_3875 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SHEWBE_3888 Purine nucleoside phosphorylase DeoD-type (fragment) K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SHEWBE_3916 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SHEWBE_3659 putative 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D SHEWBE_3064 ushA; bifunctional UDP-sugar hydrolase and 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D SHEWBE_3834 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D SHEWBE_4032 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D SHEWBE_3841 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D SHEWBE_2287 nadE; NAD synthetase, NH3/glutamine-dependent K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D SHEWBE_0862 CinA-like protein K03742 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D SHEWBE_3165 cobB; deacetylase of acetyl-CoA synthetase, NAD-dependent K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D SHEWBE_1829 yfjB; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D SHEWBE_3293 pntA; pyridine nucleotide transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D SHEWBE_3292 pntB; pyridine nucleotide transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D SHEWBE_4313 gabD; succinate-semialdehyde dehydrogenase I, NADP-dependent K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:sbk00770]
D SHEWBE_3060 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SHEWBE_0020 ilvG; Acetolactate synthase isozyme 2 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SHEWBE_3061 ilvH; acetolactate synthase isozyme III, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D SHEWBE_0019 Acetolactate synthase II, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D SHEWBE_0022 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D SHEWBE_0017 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D SHEWBE_1248 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D SHEWBE_3994 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D SHEWBE_1247 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D SHEWBE_0339 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D SHEWBE_0200 dfp; fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D SHEWBE_3841 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D SHEWBE_0697 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D SHEWBE_0900 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D SHEWBE_1635 acpS; holo-[acyl-carrier-protein] synthase 1 K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D SHEWBE_1907 4'-phosphopantetheinyl transferase family protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D SHEWBE_3425 conserved protein of unknown function K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D SHEWBE_0018 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_0123 ilvE; Branched-chain-amino-acid transaminase 1 K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_3748 hyuA; D-stereospecific phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D SHEWBE_2092 panP; Aspartate 1-decarboxylase K24264 panP; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:sbk00780]
D SHEWBE_3149 bioC; Malonyl-[acyl-carrier protein] O-methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D SHEWBE_2225 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SHEWBE_0245 3-oxoacyl-(Acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SHEWBE_3019 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SHEWBE_0248 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SHEWBE_3021 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_0247 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_2034 3-ketoacyl-(Acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_1940 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SHEWBE_0743 bioH; carboxylesterase of pimeloyl-CoA synthesis K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D SHEWBE_3150 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D SHEWBE_3152 bioA; 7,8-diaminopelargonic acid synthase, PLP-dependent K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D SHEWBE_3148 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D SHEWBE_3151 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D SHEWBE_0340 birA; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor, bio-5'-AMP-binding K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:sbk00785]
D SHEWBE_4043 lipB; lipoyl-protein ligase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D SHEWBE_4044 lipA; lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_0910 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D SHEWBE_0911 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D SHEWBE_3172 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D SHEWBE_3171 sucB; dihydrolipoamide succinyltransferase, E2 component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D SHEWBE_2813 Alpha keto acid dehydrogenase complex, E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D SHEWBE_2812 2-oxoisovalerate dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D SHEWBE_4196 2-oxoisovalerate dehydrogenase K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
D SHEWBE_2811 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D SHEWBE_1361 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D SHEWBE_1359 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D SHEWBE_1360 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:sbk00790]
D SHEWBE_0203 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D SHEWBE_4362 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_0062 Alkaline phosphatase (fragment) K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_1591 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_1572 folB; bifunctioal dihydroneopterin aldolase; dihydroneopterin triphosphate 2'-epimerase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D SHEWBE_1249 folK; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D SHEWBE_1573 2-amino-4-hydroxy-6-hydroxymethyldihydropteridinepyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D SHEWBE_3937 folP; 7,8-dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D SHEWBE_4223 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D SHEWBE_2239 folC; bifunctional folylpolyglutamate synthase and dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D SHEWBE_2190 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D SHEWBE_3853 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D SHEWBE_1162 pabA; aminodeoxychorismate synthase, subunit II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D SHEWBE_2841 pabB; aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D SHEWBE_3047 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D SHEWBE_3388 folX; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7]
D SHEWBE_3460 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D SHEWBE_3461 phhA; Phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D SHEWBE_2628 Pteridine reductase K03793 PTR1; pteridine reductase [EC:1.5.1.33]
D SHEWBE_2605 ygcF; conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D SHEWBE_2603 queC; queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D SHEWBE_1909 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D SHEWBE_0419 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D SHEWBE_0418 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D SHEWBE_0416 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D SHEWBE_0483 mogA; molybdochelatase MogA, involved in Moco biosynthesis K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D SHEWBE_0401 moeA; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D SHEWBE_0701 putative Molybdopterin biosynthesis MoeA protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D SHEWBE_3742 ygfJ; conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D SHEWBE_0702 mobA; Molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:sbk00670]
D SHEWBE_4223 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D SHEWBE_0985 fhs; Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D SHEWBE_2111 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D SHEWBE_3857 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SHEWBE_2322 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D SHEWBE_0050 purH; bifunctional protein [Includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SHEWBE_0624 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D SHEWBE_1359 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D SHEWBE_1368 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D SHEWBE_1618 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D SHEWBE_1923 purU; formyltetrahydrofolate hydrolase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D SHEWBE_4429 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D SHEWBE_1348 ygfA; putative ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:sbk00860]
D SHEWBE_3451 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SHEWBE_4008 hemA; glutamyl tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D SHEWBE_1583 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D SHEWBE_4491 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D SHEWBE_4519 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D SHEWBE_4520 Uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D SHEWBE_0057 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D SHEWBE_0631 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D SHEWBE_0104 Coproporphyrinogen III oxidase family protein K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D SHEWBE_0667 hemN; coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D SHEWBE_4279 Menaquinone-dependent protoporphyrinogen IX dehydrogenase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D SHEWBE_0601 hemG; protoporphyrin oxidase, flavoprotein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D SHEWBE_0603 putative Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D SHEWBE_3222 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D SHEWBE_4521 HemX protein K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D SHEWBE_3139 Uroporphyrinogen-III methylase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D SHEWBE_4286 Uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D SHEWBE_3416 putative Siroheme synthase, N-terminal component K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D SHEWBE_0758 cyoE; Protoheme IX farnesyltransferase 1 K02257 COX10; heme o synthase [EC:2.5.1.141]
D SHEWBE_0759 putative Cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D SHEWBE_1382 btuR; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D SHEWBE_1381 cobQ; Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D SHEWBE_1604 CobD-related protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D SHEWBE_1380 cobP; Bifunctional adenosylcobalamin biosynthesis protein CobP K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D SHEWBE_1379 cobS; Adenosylcobinamide-GDP ribazoletransferase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D SHEWBE_1378 cobT; Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D SHEWBE_1373 putative Alpha-ribazole-5'-phosphate phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D SHEWBE_1319 protein of unknown function, might related with Pyridoxamine 5'-phosphate oxidase-related FMN-binding K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D SHEWBE_2702 bfr; bacterioferritin, iron storage and detoxification protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
D SHEWBE_2703 bfr; bacterioferritin, iron storage and detoxification protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
D SHEWBE_3966 bfr; bacterioferritin, iron storage and detoxification protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
D SHEWBE_3967 bfr; bacterioferritin, iron storage and detoxification protein K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:sbk00130]
D SHEWBE_0448 ubiC; putative chorismate pyruvate-lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D SHEWBE_0028 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D SHEWBE_0071 ubiD; 3-octaprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D SHEWBE_1240 ubiX; Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D SHEWBE_1358 visC; putative oxidoreductase with FAD/NAD(P)-binding domain K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D SHEWBE_2790 ubiG; bifunctional 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D SHEWBE_1357 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D SHEWBE_4482 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D SHEWBE_4017 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D SHEWBE_0710 menF; Menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D SHEWBE_0799 menD; bifunctional 2-oxoglutarate decarboxylase and SHCHC synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D SHEWBE_0798 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D SHEWBE_0797 O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D SHEWBE_0796 putative O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D SHEWBE_0517 menB; 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D SHEWBE_4330 putative esterase VC_A0580 K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D SHEWBE_1991 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D SHEWBE_3086 melA; Protein MelA K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:sbk00900]
D SHEWBE_1831 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D SHEWBE_1935 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D SHEWBE_3837 ispD; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D SHEWBE_4010 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D SHEWBE_3836 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D SHEWBE_3654 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D SHEWBE_1699 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (also involved in penicillin tolerance and control of the stringent response. Seems to directly or indirectly interact with relA to maintain it in an inactive form during normal growth.) K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_1240 ubiX; Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D SHEWBE_1832 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D SHEWBE_4230 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D SHEWBE_1933 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:sbk00907]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SHEWBE_1975 liuE; 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D SHEWBE_2208 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SHEWBE_0596 fadA; 3-ketoacyl-CoA thiolase (Fatty oxidation complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D SHEWBE_1450 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
D SHEWBE_3492 ASPIC/UnbV domain protein K21162 sgcE4; enediyne biosynthesis protein E4
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:sbk00523]
D SHEWBE_3481 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SHEWBE_3522 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SHEWBE_3523 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SHEWBE_0687 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SHEWBE_3520 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SHEWBE_0688 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SHEWBE_3521 rmlD; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SHEWBE_3619 putative dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SHEWBE_0686 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D SHEWBE_0710 menF; Menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D SHEWBE_3523 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SHEWBE_0687 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D SHEWBE_1885 Penicillin amidase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:sbk00332]
D SHEWBE_3955 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D SHEWBE_3954 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:sbk00261]
D SHEWBE_3488 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D SHEWBE_3490 cysD; sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D SHEWBE_1287 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SHEWBE_1666 thrA; fused aspartokinase I; homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D SHEWBE_4430 metL; fused aspartokinase II; homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D SHEWBE_2236 usg; putative semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SHEWBE_2926 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D SHEWBE_3944 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:sbk00521]
D SHEWBE_2817 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SHEWBE_3409 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D SHEWBE_3481 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SHEWBE_3522 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SHEWBE_3523 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SHEWBE_0687 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SHEWBE_3520 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SHEWBE_0688 rmlC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SHEWBE_3521 rmlD; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SHEWBE_3619 putative dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SHEWBE_0686 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:sbk00525]
D SHEWBE_3481 rmlA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SHEWBE_3522 rmlA; dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SHEWBE_3523 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SHEWBE_0687 rmlB; dTDP-D-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:sbk00401]
D SHEWBE_1653 tyrA; fused chorismate mutase T; prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D SHEWBE_2787 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SHEWBE_2452 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SHEWBE_2696 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D SHEWBE_3249 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D SHEWBE_3022 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SHEWBE_4195 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SHEWBE_3021 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_0247 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_2034 3-ketoacyl-(Acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D SHEWBE_3020 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D SHEWBE_0233 putative Acyl carrier protein K02078 acpP; acyl carrier protein
D SHEWBE_0234 acpP; Acyl carrier protein 2 K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:sbk00999]
D SHEWBE_1449 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D SHEWBE_0632 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:sbk00362]
D SHEWBE_2208 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SHEWBE_0596 fadA; 3-ketoacyl-CoA thiolase (Fatty oxidation complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SHEWBE_3400 fdx; [2Fe-2S] ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_3815 oadB; Oxaloacetate decarboxylase beta chain 2 K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D SHEWBE_4197 gcdH; glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:sbk00627]
D SHEWBE_3210 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D SHEWBE_1240 ubiX; Flavin prenyltransferase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:sbk00364]
D SHEWBE_1296 putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:sbk00625]
D SHEWBE_1797 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SHEWBE_3965 frmA; Alcohol dehydrogenase class 3 (Alcohol dehydrogenase class III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SHEWBE_2832 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:sbk00361]
D SHEWBE_1296 putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:sbk00623]
D SHEWBE_1296 putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:sbk00633]
D SHEWBE_3784 nemA; N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D SHEWBE_2208 yfcY; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SHEWBE_0596 fadA; 3-ketoacyl-CoA thiolase (Fatty oxidation complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:sbk00643]
D SHEWBE_2759 hmgA; Homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D SHEWBE_3456 maiA; putative maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D SHEWBE_3458 Fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
C 00791 Atrazine degradation
D SHEWBE_2954 putative Isochorismatase family protein K23359 biuH; biuret amidohydrolase [EC:3.5.1.84]
C 00930 Caprolactam degradation [PATH:sbk00930]
D SHEWBE_0597 fadB; fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SHEWBE_2209 yfcX; fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:sbk00626]
D SHEWBE_1797 yiaY; Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SHEWBE_3965 frmA; Alcohol dehydrogenase class 3 (Alcohol dehydrogenase class III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SHEWBE_2832 adhE; fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:sbk03020]
D SHEWBE_0331 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SHEWBE_0329 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SHEWBE_0299 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SHEWBE_0217 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:sbk03010]
D SHEWBE_2784 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D SHEWBE_1929 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D SHEWBE_0317 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D SHEWBE_0300 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D SHEWBE_0306 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D SHEWBE_1105 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D SHEWBE_0327 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D SHEWBE_0309 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D SHEWBE_1095 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D SHEWBE_0324 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D SHEWBE_0301 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D SHEWBE_0328 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D SHEWBE_0302 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D SHEWBE_0310 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D SHEWBE_3928 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D SHEWBE_1648 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D SHEWBE_0314 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D SHEWBE_1107 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D SHEWBE_0319 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D SHEWBE_1693 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D SHEWBE_1568 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D SHEWBE_0334 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D SHEWBE_0320 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D SHEWBE_0323 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D SHEWBE_0322 rplD; 50S ribosomal protein L4, regulates expression of S10 operon K02926 RP-L4; large subunit ribosomal protein L4
D SHEWBE_0311 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D SHEWBE_0308 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D SHEWBE_0332 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D SHEWBE_1108 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D SHEWBE_0333 50S ribosomal subunit protein L10 (modular protein) K02864 RP-L10; large subunit ribosomal protein L10
D SHEWBE_0335 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D SHEWBE_1094 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D SHEWBE_0313 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D SHEWBE_0304 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D SHEWBE_0316 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D SHEWBE_0298 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D SHEWBE_0307 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D SHEWBE_1651 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D SHEWBE_2633 rplT; 50S ribosomal protein L20, also posttranslational autoregulator K02887 RP-L20; large subunit ribosomal protein L20
D SHEWBE_4228 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D SHEWBE_0318 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D SHEWBE_0321 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D SHEWBE_0312 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D SHEWBE_2950 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D SHEWBE_4227 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D SHEWBE_0198 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D SHEWBE_0315 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D SHEWBE_0305 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D SHEWBE_0928 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D SHEWBE_3025 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D SHEWBE_0197 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D SHEWBE_0575 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D SHEWBE_2632 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D SHEWBE_RRNA12 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA3 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA6 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA13 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA16 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA23 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA26 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA29 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA34 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA19 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA9 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA11 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA5 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA8 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA14 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA20 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA24 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA27 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA30 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA33 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA17 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA15 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA7 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA21 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA25 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA28 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA31 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA32 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA10 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA22 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA4 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA18 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:sbk00970]
D SHEWBE_TRNA65 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA72 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA12 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA29 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA6 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA26 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA78 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA4 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA80 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA81 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA82 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA84 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA85 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA83 Pseudo tRNA K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA49 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA50 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA51 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA52 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA53 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA11 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SHEWBE_TRNA14 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SHEWBE_TRNA48 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SHEWBE_TRNA45 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SHEWBE_TRNA62 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SHEWBE_TRNA94 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SHEWBE_TRNA90 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SHEWBE_TRNA93 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SHEWBE_TRNA66 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA67 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA68 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA69 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA70 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA71 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA16 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA8 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA17 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA18 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA44 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA63 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA27 tRNA-His K14226 tRNA-His; tRNA His
D SHEWBE_TRNA3 tRNA-His K14226 tRNA-His; tRNA His
D SHEWBE_TRNA13 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SHEWBE_TRNA28 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SHEWBE_TRNA7 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SHEWBE_TRNA89 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA91 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA95 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA46 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA61 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA88 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA99 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA19 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA31 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA32 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA33 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA34 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA35 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA36 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA20 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA38 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA39 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA40 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA41 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA42 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA58 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA60 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA87 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA92 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA96 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA22 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SHEWBE_TRNA24 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SHEWBE_TRNA98 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SHEWBE_TRNA30 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SHEWBE_TRNA1 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SHEWBE_TRNA2 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SHEWBE_TRNA25 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SHEWBE_TRNA86 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA43 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA5 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA79 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA64 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA10 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SHEWBE_TRNA15 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SHEWBE_TRNA21 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SHEWBE_TRNA23 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SHEWBE_TRNA97 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D SHEWBE_TRNA54 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SHEWBE_TRNA55 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SHEWBE_TRNA56 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SHEWBE_TRNA9 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SHEWBE_TRNA73 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA57 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA74 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA75 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA76 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA77 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA59 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_3451 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SHEWBE_2105 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SHEWBE_3825 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SHEWBE_2583 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SHEWBE_2844 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SHEWBE_0584 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SHEWBE_0583 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SHEWBE_2629 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SHEWBE_2641 serS; seryl-tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SHEWBE_2110 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SHEWBE_3050 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SHEWBE_0624 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D SHEWBE_4179 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SHEWBE_4029 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SHEWBE_1696 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SHEWBE_1311 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SHEWBE_0925 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SHEWBE_1955 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SHEWBE_3653 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SHEWBE_2442 pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SHEWBE_2443 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SHEWBE_1599 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SHEWBE_0886 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:sbk03060]
D SHEWBE_0303 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D SHEWBE_0337 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D SHEWBE_3934 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D SHEWBE_3420 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D SHEWBE_3419 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D SHEWBE_3421 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D SHEWBE_0572 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SHEWBE_0163 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SHEWBE_0495 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D SHEWBE_1647 ffh; 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SHEWBE_MISCRNA15 Bacteria_small_SRP K01983 ffs; SRP RNA
D SHEWBE_0791 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D SHEWBE_4485 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D SHEWBE_4486 tatB; TatABCE protein translocation system subunit K03117 tatB; sec-independent protein translocase protein TatB
D SHEWBE_4487 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
D SHEWBE_1630 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SHEWBE_1697 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:sbk04122]
D SHEWBE_3405 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SHEWBE_4452 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SHEWBE_3051 Mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D SHEWBE_2934 conserved protein of unknown function K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SHEWBE_0587 tusA; sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SHEWBE_2644 dsrH; Sulfurtransferase complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D SHEWBE_2645 conserved protein of unknown function K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D SHEWBE_2646 tusD; methylsulfur transfer protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D SHEWBE_2643 tusE; subunit of enzyme for 2-thio modification of mnm5s2U of tRNA anticodon U K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D SHEWBE_2368 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SHEWBE_0416 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D SHEWBE_0419 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D SHEWBE_0417 moaD; molybdopterin synthase, small subunit K03636 moaD; sulfur-carrier protein
D SHEWBE_0402 moeB; molybdopterin synthase sulfurylase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D SHEWBE_2922 moeZ; Sulfur carrier protein CysO adenylyltransferase / Sulfur carrier protein CysO sulfurtransferase K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D SHEWBE_0418 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D SHEWBE_0483 mogA; molybdochelatase MogA, involved in Moco biosynthesis K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D SHEWBE_1836 thiI; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SHEWBE_2569 putative ThiS protein K03154 thiS; sulfur carrier protein
D SHEWBE_2568 thiF; thiamin (thiazole moiety) biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:sbk03018]
D SHEWBE_1615 nudH; (di)nucleoside polyphosphate hydrolase (Ap5A pyrophosphatase) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D SHEWBE_3032 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D SHEWBE_4497 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D SHEWBE_3839 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SHEWBE_3926 pnp; polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D SHEWBE_2884 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_3446 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_3882 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_1216 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_1537 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_1737 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_1099 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SHEWBE_4421 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SHEWBE_2805 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SHEWBE_0193 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SHEWBE_2672 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D SHEWBE_4499 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D SHEWBE_3947 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D SHEWBE_1012 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SHEWBE_1153 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D SHEWBE_1250 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:sbk03030]
D SHEWBE_2896 putative DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_3294 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_1944 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SHEWBE_3230 DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SHEWBE_3044 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SHEWBE_4031 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SHEWBE_4178 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SHEWBE_0577 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SHEWBE_1110 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D SHEWBE_1566 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D SHEWBE_4415 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SHEWBE_2056 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D SHEWBE_1943 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D SHEWBE_0675 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SHEWBE_3338 DNA ligase, NAD(+)-dependent (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:sbk03410]
D SHEWBE_2592 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D SHEWBE_1346 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D SHEWBE_1758 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D SHEWBE_0699 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D SHEWBE_0585 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D SHEWBE_3264 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D SHEWBE_1669 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D SHEWBE_0675 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SHEWBE_1473 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SHEWBE_3338 DNA ligase, NAD(+)-dependent (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:sbk03420]
D SHEWBE_3208 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D SHEWBE_4417 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D SHEWBE_2601 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D SHEWBE_2421 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C
D SHEWBE_0029 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SHEWBE_0675 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SHEWBE_3338 DNA ligase, NAD(+)-dependent (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SHEWBE_0211 Atp-dependent rna helicase, eif-4a family protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
C 03430 Mismatch repair [PATH:sbk03430]
D SHEWBE_3830 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D SHEWBE_1150 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D SHEWBE_1613 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D SHEWBE_0029 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SHEWBE_3013 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D SHEWBE_3642 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D SHEWBE_1833 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D SHEWBE_1473 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SHEWBE_4415 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SHEWBE_1944 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SHEWBE_0577 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SHEWBE_3230 DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SHEWBE_4031 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SHEWBE_3044 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SHEWBE_2896 putative DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_3294 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_4178 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SHEWBE_3338 DNA ligase, NAD(+)-dependent (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SHEWBE_0880 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:sbk03440]
D SHEWBE_1473 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SHEWBE_4415 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SHEWBE_0578 recF; gap repair protein K03629 recF; DNA replication and repair protein RecF
D SHEWBE_1633 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D SHEWBE_3226 recR; gap repair protein K06187 recR; recombination protein RecR
D SHEWBE_3828 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D SHEWBE_0675 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SHEWBE_2586 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D SHEWBE_2587 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D SHEWBE_2585 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D SHEWBE_0229 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SHEWBE_2525 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D SHEWBE_2526 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D SHEWBE_2524 recD; exonuclease V (RecBCD complex), alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D SHEWBE_1944 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SHEWBE_0577 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SHEWBE_3230 DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SHEWBE_4031 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SHEWBE_3044 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SHEWBE_2896 putative DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_3294 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_4178 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SHEWBE_0926 priA; Primosome factor n' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D SHEWBE_1106 priB; primosomal protein N K02686 priB; primosomal replication protein N
D SHEWBE_2147 putative Primosomal replication protein n'' K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:sbk03250]
D SHEWBE_3987 cyp; Peptidyl-prolyl cis-trans isomerase cyp18 K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SHEWBE_1510 Peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
D SHEWBE_1284 dap; Dipeptidyl aminopeptidase 4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
C 03266 Virion - Herpesvirus
D SHEWBE_2214 Peptidase, M16 family protein K01408 IDE; insulysin [EC:3.4.24.56]
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:sbk02010]
D SHEWBE_0705 conserved exported protein of unknown function, might belong to Extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein
D SHEWBE_0704 ABC transporter, permease protein K05773 tupB; tungstate transport system permease protein
D SHEWBE_0703 ABC transporter, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D SHEWBE_0415 putative molybdate transporter subunit; periplasmic-binding component of ABC superfamily modA K02020 modA; molybdate transport system substrate-binding protein
D SHEWBE_0414 putative molybdate transporter subunit; membrane component of ABC superfamily modB K02018 modB; molybdate transport system permease protein
D SHEWBE_0413 putative transporter subunit: ATP-binding component of ABC superfamily transporter K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D SHEWBE_4154 putative Ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D SHEWBE_4153 putative ferric ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D SHEWBE_4152 fbpC; Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D SHEWBE_1084 putative toluene transporter subunit, yrbC: membrane component of ABC superfamily K07323 mlaC; phospholipid transport system substrate-binding protein
D SHEWBE_1083 yrbD; toluene transporter subunit: membrane component of ABC superfamily K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D SHEWBE_1082 yrbE; toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D SHEWBE_1085 SpoIIAA family protein K07122 mlaB; phospholipid transport system transporter-binding protein
D SHEWBE_1081 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D SHEWBE_4125 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D SHEWBE_4123 putative ABC-type transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D SHEWBE_4122 putative ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D SHEWBE_4124 putative ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D SHEWBE_1861 pstS; Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D SHEWBE_2067 putative phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D SHEWBE_2073 putative phosphate transport system permease protein, doubled length compared to homologues, 5' end have no conserved domain K02038 pstA; phosphate transport system permease protein
D SHEWBE_2074 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SHEWBE_2278 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D SHEWBE_2280 putative ABC-type phosphate/phosphonate transport system, permease component K02042 phnE; phosphonate transport system permease protein
D SHEWBE_2279 putative phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D SHEWBE_2130 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K19226 sapA; cationic peptide transport system substrate-binding protein
D SHEWBE_2129 sapB; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19227 sapB; cationic peptide transport system permease protein
D SHEWBE_2128 sapC; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19228 sapC; cationic peptide transport system permease protein
D SHEWBE_2127 sapD; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19229 sapD; cationic peptide transport system ATP-binding protein
D SHEWBE_2125 sapF; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19230 sapF; cationic peptide transport system ATP-binding protein
D SHEWBE_1384 putative vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily btuF K06858 btuF; vitamin B12 transport system substrate-binding protein
D SHEWBE_0479 putative Transport protein K09696 natB; sodium transport system permease protein
D SHEWBE_0477 natA; ABC transporter ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D SHEWBE_3204 lolE; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D SHEWBE_3206 lolC; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D SHEWBE_3205 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D SHEWBE_0291 ccmD; cytochrome c biogenesis protein K02196 ccmD; heme exporter protein D
D SHEWBE_0290 ccmC; heme exporter subunit; membrane component of ABC superfamily K02195 ccmC; heme exporter protein C
D SHEWBE_0289 ccmB; heme exporter subunit; membrane component of ABC superfamily K02194 ccmB; heme exporter protein B
D SHEWBE_0288 ccmA; heme exporter subunit; ATP-binding component of ABC superfamily K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D SHEWBE_4169 conserved membrane protein of unknown function K07091 lptF; lipopolysaccharide export system permease protein
D SHEWBE_4168 yjgQ; conserved hypothetical protein; putative inner membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D SHEWBE_1075 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D SHEWBE_0074 nosY; putative ABC transporter permease protein NosY K19341 nosY; Cu-processing system permease protein
D SHEWBE_0075 nosF; putative ABC transporter ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein
D SHEWBE_0793 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D SHEWBE_0792 ftsE; Cell division ABC transporter, ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SHEWBE_3201 msbA; fused lipid transporter subunits of ABC superfamily: membrane component; ATP-binding component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D SHEWBE_4159 putative ABC transporter, ATP-binding protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D SHEWBE_3450 conserved membrane protein of unknown function, containing ABC transporter family ATP binding domain and transmembrane domain K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D SHEWBE_0002 Toxin secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SHEWBE_1220 cydC; cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D SHEWBE_1219 cydD; cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS) [PATH:sbk02060]
D SHEWBE_2902 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SHEWBE_1616 ptsP; fused PTS enzyme: PEP-protein phosphotransferase (enzyme I); GAF domain containing protein K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D SHEWBE_1070 npr; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) K08485 ptsO; phosphocarrier protein NPr
D SHEWBE_1072 ptsN; sugar-specific enzyme IIA component of PTS K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:sbk03070]
D SHEWBE_1127 tolC; transport channel K12340 tolC; outer membrane protein
D SHEWBE_0377 gspD; general secretory pathway component, cryptic K02453 gspD; general secretion pathway protein D
D SHEWBE_0378 exeC; Type II secretion system protein C K02452 gspC; general secretion pathway protein C
D SHEWBE_0375 gspF; general secretory pathway component, cryptic K02455 gspF; general secretion pathway protein F
D SHEWBE_0373 gspG; pseudopilin, cryptic, general secretion pathway K02456 gspG; general secretion pathway protein G
D SHEWBE_0371 General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D SHEWBE_0370 General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D SHEWBE_0369 gspJ; Type II secretion system protein GspJ K02459 gspJ; general secretion pathway protein J
D SHEWBE_0368 exeK; Type II secretion system protein K K02460 gspK; general secretion pathway protein K
D SHEWBE_0367 exeL; Type II secretion system protein L K02461 gspL; general secretion pathway protein L
D SHEWBE_0366 Type II secretion system protein M K02462 gspM; general secretion pathway protein M
D SHEWBE_0376 gspE; general secretory pathway component, cryptic K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D SHEWBE_3420 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D SHEWBE_3419 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D SHEWBE_0337 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D SHEWBE_3934 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D SHEWBE_0303 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D SHEWBE_3421 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D SHEWBE_0572 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SHEWBE_0163 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SHEWBE_0791 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D SHEWBE_0495 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D SHEWBE_1647 ffh; 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SHEWBE_4485 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D SHEWBE_4486 tatB; TatABCE protein translocation system subunit K03117 tatB; sec-independent protein translocase protein TatB
D SHEWBE_4487 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:sbk02020]
D SHEWBE_1860 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D SHEWBE_1859 phoB; positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D SHEWBE_4362 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_0062 Alkaline phosphatase (fragment) K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_1591 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_1861 pstS; Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D SHEWBE_2276 Sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_1871 Sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_2277 phoP; Transcriptional regulatory protein PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SHEWBE_1872 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SHEWBE_0735 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D SHEWBE_0736 ompR; two-component response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D SHEWBE_0831 Sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D SHEWBE_2803 cpxR; Transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D SHEWBE_0832 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D SHEWBE_1752 DNA-binding response regulator (fragment) K07661 rstA; two-component system, OmpR family, response regulator RstA
D SHEWBE_1466 conserved protein of unknown function K07799 mdtA; membrane fusion protein, multidrug efflux system
D SHEWBE_0782 putative Heavy metal efflux protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D SHEWBE_0780 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D SHEWBE_3592 fliC; Flagellin FliC K02406 fliC; flagellin
D SHEWBE_3593 fliC; Flagellin FliC K02406 fliC; flagellin
D SHEWBE_3564 fliA; RNA polymerase, sigma 28 (sigma F) factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D SHEWBE_1834 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D SHEWBE_3886 torR; DNA-binding response regulator in two-component regulatory system with TorS K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D SHEWBE_3880 torD; Chaperone protein TorD K03533 torD; TorA specific chaperone
D SHEWBE_1285 arcA; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D SHEWBE_0759 putative Cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D SHEWBE_0576 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D SHEWBE_0391 TonB-dependent receptor (fragment) K19611 fepA; ferric enterobactin receptor
D SHEWBE_4084 sfcA; malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D SHEWBE_0477 natA; ABC transporter ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D SHEWBE_0479 putative Transport protein K09696 natB; sodium transport system permease protein
D SHEWBE_1530 Histidine kinase K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D SHEWBE_1529 narP; DNA-binding response regulator in two-component regulatory system with NarQ or NarX K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D SHEWBE_1964 putative Lipoprotein K06080 rcsF; RcsF protein
D SHEWBE_3844 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D SHEWBE_2420 uvrY; DNA-binding response regulator in two-component regulatory system with BarA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D SHEWBE_3779 conserved protein of unknown function, might belong to Carbon storage regulator homolog K03563 csrA; carbon storage regulator
D SHEWBE_3824 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator
D SHEWBE_2381 putative beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D SHEWBE_2859 Flp/Fap pilin component superfamily K02651 flp; pilus assembly protein Flp/PilA
D SHEWBE_2856 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D SHEWBE_2854 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC
D SHEWBE_2849 Flp pilus assembly protein, ATPase CpaE K02282 cpaE; pilus assembly protein CpaE
D SHEWBE_2848 putative pilus assembly protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D SHEWBE_2847 conserved membrane protein of unknown function,might belong to Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D SHEWBE_2846 conserved membrane protein of unknown function,might belong to Type II secretion system protein K12511 tadC; tight adherence protein C
D SHEWBE_1926 glnD; uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D SHEWBE_1708 glnK; regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) K04751 glnB; nitrogen regulatory protein P-II 1
D SHEWBE_0264 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D SHEWBE_0265 glnG; response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D SHEWBE_0261 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_1074 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D SHEWBE_0904 Methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA
D SHEWBE_3605 cheR; Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SHEWBE_0750 cheR; chemotaxis regulator, protein-glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SHEWBE_3632 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_2245 Methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_2441 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_3227 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_3269 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_3323 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4024 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4181 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4221 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4256 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0422 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0482 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0487 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0549 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0751 protein of unknown function,might be Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1033 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1048 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1212 Methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1331 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1433 putative Chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1956 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_2547 Methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D SHEWBE_1026 Chemotaxis protein K03776 aer; aerotaxis receptor
D SHEWBE_1716 Chemotaxis protein K03776 aer; aerotaxis receptor
D SHEWBE_3556 CheW; Purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SHEWBE_3557 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D SHEWBE_0752 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D SHEWBE_3561 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_0753 cheA; CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_3563 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SHEWBE_0754 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SHEWBE_3560 cheB; Chemotaxis response regulator protein-glutamate methylesterase 1 K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SHEWBE_0749 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SHEWBE_3075 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_3444 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_3606 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_2766 Histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D SHEWBE_2767 Two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D SHEWBE_3587 putative DNA-binding response regulator in two-component system K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D SHEWBE_3586 putative Flagellar sensor histidine kinase fleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D SHEWBE_3585 putative flagellar regulatory protein C FlrC K10943 flrC; two-component system, response regulator FlrC
D SHEWBE_1173 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SHEWBE_1762 yneH; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D SHEWBE_1157 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D SHEWBE_1158 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D SHEWBE_1159 petC; Cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D SHEWBE_2682 ccoN; Cbb3-type cytochrome c oxidase subunit CcoN1 K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D SHEWBE_2683 Cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D SHEWBE_2684 Cbb3-type cytochrome oxidase, subunit 3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D SHEWBE_2685 ccoP; Cbb3-type cytochrome c oxidase subunit CcoP2 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D SHEWBE_3635 cydA; cytochrome d terminal oxidase, polypeptide subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D SHEWBE_3634 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D SHEWBE_3633 Cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D SHEWBE_1127 tolC; transport channel K12340 tolC; outer membrane protein
D SHEWBE_3437 putative Capsular polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D SHEWBE_3540 Periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein
D SHEWBE_3036 putative Protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D SHEWBE_3531 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D SHEWBE_3530 rffD; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D SHEWBE_3608 putative Negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D SHEWBE_1157 petA; Ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:sbk02024]
D SHEWBE_3976 luxS; S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D SHEWBE_1153 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D SHEWBE_3249 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D SHEWBE_2356 aroH; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SHEWBE_4162 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SHEWBE_1652 aroF; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SHEWBE_4117 lsrK; autoinducer AI-2 kinase K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D SHEWBE_4524 VCBS (modular protein) K20276 bapA; large repetitive protein
D SHEWBE_2463 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_3266 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0227 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0474 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_1341 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_1173 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SHEWBE_2190 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D SHEWBE_3855 ribD; fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D SHEWBE_2769 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D SHEWBE_1866 Peptidase, M1 family protein (fragment) K02032 ddpF; peptide/nickel transport system ATP-binding protein
D SHEWBE_0572 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SHEWBE_0337 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D SHEWBE_3934 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D SHEWBE_0303 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D SHEWBE_3421 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D SHEWBE_0163 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SHEWBE_0791 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D SHEWBE_0495 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D SHEWBE_1647 ffh; 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:sbk02030]
D SHEWBE_3632 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_2245 Methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_2441 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_3227 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_3269 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_3323 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4024 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4181 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4221 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4256 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0422 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0482 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0487 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0549 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0751 protein of unknown function,might be Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1033 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1048 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1212 Methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1331 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1433 putative Chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1956 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_2547 Methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D SHEWBE_1026 Chemotaxis protein K03776 aer; aerotaxis receptor
D SHEWBE_1716 Chemotaxis protein K03776 aer; aerotaxis receptor
D SHEWBE_3561 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_0753 cheA; CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_3556 CheW; Purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SHEWBE_3557 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D SHEWBE_0752 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D SHEWBE_3563 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SHEWBE_0754 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SHEWBE_3562 cheZ; Protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D SHEWBE_3560 cheB; Chemotaxis response regulator protein-glutamate methylesterase 1 K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SHEWBE_0749 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SHEWBE_3075 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_3444 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_3606 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_0983 cheD; putative chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D SHEWBE_3605 cheR; Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SHEWBE_0750 cheR; chemotaxis regulator, protein-glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SHEWBE_3582 fliG; flagellar motor switching and energizing component FliG K02410 fliG; flagellar motor switch protein FliG
D SHEWBE_3576 fliM; flagellar motor switching and energizing component FliM K02416 fliM; flagellar motor switch protein FliM
D SHEWBE_3575 fliN; flagellar motor switching and energizing component FliN K02417 fliN; flagellar motor switch protein FliN
D SHEWBE_1834 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D SHEWBE_1835 putative Flagellar motor protein PomB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:sbk02040]
D SHEWBE_3584 fliE; Flagellar basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D SHEWBE_3583 putative flagellar basal-body MS-ring and collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D SHEWBE_3582 fliG; flagellar motor switching and energizing component FliG K02410 fliG; flagellar motor switch protein FliG
D SHEWBE_3581 putative flagellar biosynthesis chaperone FliH K02411 fliH; flagellar assembly protein FliH
D SHEWBE_3580 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D SHEWBE_3579 putative flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D SHEWBE_3578 putative Flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D SHEWBE_3577 putative flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D SHEWBE_0447 putative Flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D SHEWBE_3576 fliM; flagellar motor switching and energizing component FliM K02416 fliM; flagellar motor switch protein FliM
D SHEWBE_3575 fliN; flagellar motor switching and energizing component FliN K02417 fliN; flagellar motor switch protein FliN
D SHEWBE_3573 putative flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D SHEWBE_3572 fliP; component of the flagellar export machinery FliP K02419 fliP; flagellar biosynthesis protein FliP
D SHEWBE_3571 putative component of the flagellar export machinery FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D SHEWBE_3570 fliR; component of the flagellar export machinery FliR K02421 fliR; flagellar biosynthesis protein FliR
D SHEWBE_3567 flhA; component of the flagellar export machinery FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D SHEWBE_3569 flhB; component of the flagellar export machinery FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D SHEWBE_3607 putative Flagellar basal-body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D SHEWBE_3604 flgB; flagellar component of cell-proximal portion of basal-body rod FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D SHEWBE_3603 flgC; flagellar component of cell-proximal portion of basal-body rod FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D SHEWBE_3602 putative flagellar hook assembly cap protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D SHEWBE_3601 putative Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D SHEWBE_3600 flgF; flagellar component of cell-proximal portion of basal-body rod FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D SHEWBE_3599 flgG; flagellar component of cell-distal portion of basal-body rod FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D SHEWBE_3598 flgH; putative flagellar protein of basal-body outer-membrane L ring FlgH K02393 flgH; flagellar L-ring protein FlgH
D SHEWBE_3597 flgI; flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D SHEWBE_3596 flgJ; Flagellar rod assembly protein/Peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D SHEWBE_3595 putative flagellar hook-filament junction protein 1 FlgK K02396 flgK; flagellar hook-associated protein 1
D SHEWBE_3594 putative flagellar hook-associated protein 3 FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D SHEWBE_3610 conserved protein of unknown function K09860 flgP; outer membrane protein FlgP
D SHEWBE_1098 Sodium-type flagellar protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D SHEWBE_2329 motY; Sodium-type flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY
D SHEWBE_3592 fliC; Flagellin FliC K02406 fliC; flagellin
D SHEWBE_3593 fliC; Flagellin FliC K02406 fliC; flagellin
D SHEWBE_3590 putative flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D SHEWBE_3588 fliS; Flagellin chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D SHEWBE_1834 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D SHEWBE_1835 putative Flagellar motor protein PomB K02557 motB; chemotaxis protein MotB
D SHEWBE_3608 putative Negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D SHEWBE_3609 conserved protein of unknown function, containing the flagellar assembly protein FlgN-domain K02399 flgN; flagellar biosynthesis protein FlgN
D SHEWBE_1565 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor
D SHEWBE_3587 putative DNA-binding response regulator in two-component system K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D SHEWBE_1074 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D SHEWBE_3585 putative flagellar regulatory protein C FlrC K10943 flrC; two-component system, response regulator FlrC
D SHEWBE_3564 fliA; RNA polymerase, sigma 28 (sigma F) factor FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D SHEWBE_3839 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D SHEWBE_1368 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:sbk01501]
D SHEWBE_3989 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D SHEWBE_3213 nagZ; beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D SHEWBE_2381 putative beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D SHEWBE_2771 putative acriflavine resistance protein E K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_2924 HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_0721 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_1795 Efflux transporter, MFP subunit, AcrA/E family protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_2770 bepE; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D SHEWBE_2923 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D SHEWBE_0722 acrB; multidrug efflux system protein,AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D SHEWBE_1796 bepG; Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D SHEWBE_2769 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D SHEWBE_1127 tolC; transport channel K12340 tolC; outer membrane protein
D SHEWBE_0871 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SHEWBE_4036 mrdA; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D SHEWBE_0177 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:sbk01502]
D SHEWBE_2498 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SHEWBE_3568 putative D-alanine--D-alanine ligase Ddl K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SHEWBE_1112 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D SHEWBE_0175 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D SHEWBE_0174 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SHEWBE_0171 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:sbk01503]
D SHEWBE_2276 Sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_1871 Sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_2277 phoP; Transcriptional regulatory protein PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SHEWBE_1872 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SHEWBE_2623 Phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D SHEWBE_2130 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K19226 sapA; cationic peptide transport system substrate-binding protein
D SHEWBE_2129 sapB; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19227 sapB; cationic peptide transport system permease protein
D SHEWBE_2128 sapC; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19228 sapC; cationic peptide transport system permease protein
D SHEWBE_2127 sapD; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19229 sapD; cationic peptide transport system ATP-binding protein
D SHEWBE_2125 sapF; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19230 sapF; cationic peptide transport system ATP-binding protein
D SHEWBE_0831 Sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D SHEWBE_2803 cpxR; Transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D SHEWBE_0832 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D SHEWBE_1149 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D SHEWBE_1576 ycfS; putative L,D-transpeptidase YcfS K19236 ycfS; L,D-transpeptidase YcfS
D SHEWBE_0130 Thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D SHEWBE_3987 cyp; Peptidyl-prolyl cis-trans isomerase cyp18 K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SHEWBE_1510 Peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SHEWBE_2771 putative acriflavine resistance protein E K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_2924 HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_0721 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_1795 Efflux transporter, MFP subunit, AcrA/E family protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_2770 bepE; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D SHEWBE_2923 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D SHEWBE_0722 acrB; multidrug efflux system protein,AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D SHEWBE_1796 bepG; Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D SHEWBE_1127 tolC; transport channel K12340 tolC; outer membrane protein
D SHEWBE_1941 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:sbk01000]
C 01001 Protein kinases [BR:sbk01001]
D SHEWBE_4291 conserved protein of unknown function K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D SHEWBE_3869 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D SHEWBE_3685 conserved protein of unknown function, might belong to Phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SHEWBE_3724 conserved protein of unknown function, might belong to Phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SHEWBE_2051 conserved protein of unknown function K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SHEWBE_3475 conserved protein of unknown function, might belong to anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D SHEWBE_3436 conserved protein of unknown function K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D SHEWBE_1860 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D SHEWBE_2276 Sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_1871 Sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_0735 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D SHEWBE_0831 Sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D SHEWBE_4202 putative Sensor protein RstB K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D SHEWBE_1530 Histidine kinase K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D SHEWBE_3844 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D SHEWBE_0264 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D SHEWBE_0708 Sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D SHEWBE_3561 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_0753 cheA; CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_2766 Histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D SHEWBE_3586 putative Flagellar sensor histidine kinase fleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D SHEWBE_2674 conserved protein of unknown function, might belong to Signal transduction histidine-protein kinase BarA K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D SHEWBE_1002 Sensory box histidine kinase/response regulator K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:sbk01009]
D SHEWBE_3225 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D SHEWBE_3914 Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:sbk01002]
D SHEWBE_1697 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
D SHEWBE_0901 tapD; Type 4 prepilin-like proteins leader peptide-processing enzyme [Includes: Leader peptidase; N-methyltransferase] K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D SHEWBE_2858 conserved membrane protein of unknown function,might belong to Peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D SHEWBE_3640 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D SHEWBE_2242 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D SHEWBE_1608 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D SHEWBE_0522 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SHEWBE_2320 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D SHEWBE_3528 putative Asparagine synthetase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D SHEWBE_1576 ycfS; putative L,D-transpeptidase YcfS K19236 ycfS; L,D-transpeptidase YcfS
D SHEWBE_2862 conserved protein of unknown function, might belong to Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D SHEWBE_2952 putative peptidoglycan binding protein,Ykud domain-containing protein K21470 ycbB; L,D-transpeptidase YcbB
D SHEWBE_2392 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SHEWBE_1519 Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SHEWBE_2612 Zinc-dependent metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D SHEWBE_0717 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D SHEWBE_3090 dcp; Dipeptidyl carboxypeptidase K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D SHEWBE_0449 putative Protease K09607 ina; immune inhibitor A [EC:3.4.24.-]
D SHEWBE_4074 Peptidase, M13 family protein K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D SHEWBE_4146 Endothelin-converting enzyme 1 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D SHEWBE_0918 Peptidase, M13 family protein K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D SHEWBE_2214 Peptidase, M16 family protein K01408 IDE; insulysin [EC:3.4.24.56]
D SHEWBE_3806 Peptidase, M16 family protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D SHEWBE_4305 Peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D SHEWBE_0816 Peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D SHEWBE_0817 conserved exported protein of unknown function,might belong to Peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D SHEWBE_3961 putative Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SHEWBE_4170 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SHEWBE_2043 Cytosol aminopeptidase family protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SHEWBE_1255 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D SHEWBE_2911 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D SHEWBE_4384 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D SHEWBE_3962 pepD; aminoacyl-histidine dipeptidase (peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D SHEWBE_2176 Peptidase, M23/M37 family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D SHEWBE_1927 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D SHEWBE_0598 pepQ; proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D SHEWBE_1540 putative Aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D SHEWBE_3938 ftsH; protease, ATP-dependent zinc-metallo K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D SHEWBE_3144 htpX; membrane-associated Zn-dependent endopeptidase; self-cleaved K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D SHEWBE_2935 yfgC; putative peptidase K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D SHEWBE_1936 yaeL; zinc metallopeptidase K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D SHEWBE_3871 putative cell surface protein containing PDK and Cadherin domain K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33]
D SHEWBE_3667 conserved protein of unknown function K09933 mtfA; MtfA peptidase
D SHEWBE_1091 degQ; serine endoprotease, periplasmic K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D SHEWBE_1090 degS; serine endoprotease, periplasmic K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D SHEWBE_1289 Serine protease, subtilase family protein K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-]
D SHEWBE_2331 f1pep; Prolyl endopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D SHEWBE_1284 dap; Dipeptidyl aminopeptidase 4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D SHEWBE_0395 ptrB; Protease 2 K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D SHEWBE_4041 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SHEWBE_2776 Penicillin-binding protein 4 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D SHEWBE_2114 clpP; ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D SHEWBE_2739 conserved protein of unknown function, might belong to ATP-dependent Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D SHEWBE_2116 lon; DNA-binding ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D SHEWBE_0772 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D SHEWBE_2990 Peptidase S24, S26A and S26B K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D SHEWBE_1630 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SHEWBE_0252 Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D SHEWBE_2391 prc; carboxy-terminal protease for penicillin-binding protein 3 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D SHEWBE_0499 putative Carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D SHEWBE_3794 Tricorn protease homolog K08676 tri; tricorn protease [EC:3.4.21.-]
D SHEWBE_1885 Penicillin amidase family protein K01434 pac; penicillin G amidase [EC:3.5.1.11]
D SHEWBE_2797 sppA; protease IV (signal peptide peptidase) K04773 sppA; protease IV [EC:3.4.21.-]
D SHEWBE_3240 sohB; putative inner membrane peptidase K04774 sohB; serine protease SohB [EC:3.4.21.-]
D SHEWBE_0676 glpG; Rhomboid protease GlpG K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D SHEWBE_0923 hslV; peptidase component of the HslUV protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D SHEWBE_2482 iaaA; isoaspartyl dipeptidase with L-asparaginase activity K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D SHEWBE_3089 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SHEWBE_2226 conserved protein of unknown function K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D SHEWBE_1732 yegQ; putative peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D SHEWBE_1990 putative collagenase family protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D SHEWBE_1718 yhbV; protease K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D SHEWBE_1719 yhbU; peptidase (collagenase-like) K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D SHEWBE_0967 pmbA; peptidase required for the maturation and secretion of the antibiotic peptide MccB17 K03592 pmbA; PmbA protein
D SHEWBE_0958 tldD; putative peptidase K03568 tldD; TldD protein
D SHEWBE_3158 serine protease inhibitor, ecotin K08276 eco; ecotin
D SHEWBE_1156 hflC; modulator for HflB protease specific for phage lambda cII repressor K04087 hflC; modulator of FtsH protease HflC
D SHEWBE_1155 hflK; modulator for HflB protease specific for phage lambda cII repressor K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:sbk01003]
D SHEWBE_3439 Glycosyltransferase-like protein K16150 K16150; glycogen synthase [EC:2.4.1.11]
D SHEWBE_1805 Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D SHEWBE_3441 Glycosyl transferase, group 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D SHEWBE_1261 mrcB; fused glycosyl transferase; transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D SHEWBE_0871 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SHEWBE_2908 conserved protein of unknown function, containing Penicillin binding protein transglycosylase domain K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:sbk01005]
D SHEWBE_1941 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D SHEWBE_1942 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D SHEWBE_0166 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D SHEWBE_1939 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D SHEWBE_2108 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D SHEWBE_3200 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D SHEWBE_4303 lpxL; Lipid A biosynthesis lauroyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D SHEWBE_2445 lpxM; Lipid A biosynthesis myristoyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D SHEWBE_0684 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D SHEWBE_2623 Phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D SHEWBE_0685 kdkA; 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D SHEWBE_2916 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109]
D SHEWBE_2917 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48]
D SHEWBE_3997 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D SHEWBE_2918 kdsB; 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D SHEWBE_1078 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D SHEWBE_1079 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D SHEWBE_0689 putative glycosyltransferase HI_0261 K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D SHEWBE_3346 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D SHEWBE_2257 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D SHEWBE_0696 rfaE; fused heptose 7-phosphate kinase; heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D SHEWBE_3519 rfbG; dTDP-rhamnosyl transferase RfbG K12991 rfbG; rhamnosyltransferase [EC:2.4.1.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:sbk01011]
D SHEWBE_1087 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SHEWBE_0341 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SHEWBE_0170 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D SHEWBE_0173 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SHEWBE_0176 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D SHEWBE_2498 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SHEWBE_3568 putative D-alanine--D-alanine ligase Ddl K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SHEWBE_1112 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D SHEWBE_0355 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D SHEWBE_0174 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SHEWBE_0171 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D SHEWBE_1574 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SHEWBE_1694 murJ; putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D SHEWBE_0871 mrcA; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SHEWBE_1261 mrcB; fused glycosyl transferase; transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D SHEWBE_4036 mrdA; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D SHEWBE_0177 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D SHEWBE_4041 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SHEWBE_2776 Penicillin-binding protein 4 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D SHEWBE_2908 conserved protein of unknown function, containing Penicillin binding protein transglycosylase domain K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
D SHEWBE_1576 ycfS; putative L,D-transpeptidase YcfS K19236 ycfS; L,D-transpeptidase YcfS
D SHEWBE_2862 conserved protein of unknown function, might belong to Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D SHEWBE_2952 putative peptidoglycan binding protein,Ykud domain-containing protein K21470 ycbB; L,D-transpeptidase YcbB
D SHEWBE_2176 Peptidase, M23/M37 family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D SHEWBE_2537 Lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D SHEWBE_2469 Lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D SHEWBE_3071 Membrane-bound lytic transglycolase-related protein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D SHEWBE_4039 mltB; Membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D SHEWBE_0595 Murein transglycosylase K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D SHEWBE_2549 Lytic transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D SHEWBE_3637 yfhD; putative transglycosylase K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D SHEWBE_3046 mltG; Endolytic murein transglycosylase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D SHEWBE_4040 rlpA; Endolytic peptidoglycan transglycosylase RlpA K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D SHEWBE_1149 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D SHEWBE_0907 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D SHEWBE_1577 putative Major outer membrane lipoprotein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:sbk01004]
D SHEWBE_3022 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SHEWBE_4195 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SHEWBE_3023 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SHEWBE_3287 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SHEWBE_2225 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SHEWBE_0245 3-oxoacyl-(Acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SHEWBE_3019 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SHEWBE_0248 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SHEWBE_3021 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_0247 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_2034 3-ketoacyl-(Acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SHEWBE_2406 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D SHEWBE_1940 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SHEWBE_2124 putative Trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D SHEWBE_3394 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D SHEWBE_1993 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D SHEWBE_0358 Acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D SHEWBE_2350 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SHEWBE_1984 conserved protein of unknown function K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D SHEWBE_2463 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_3266 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0227 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0474 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_1341 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0773 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D SHEWBE_3024 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D SHEWBE_1571 plsY; 1-acyl glycerol-3-phosphate synthetase component K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SHEWBE_0993 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:sbk01008]
D SHEWBE_3492 ASPIC/UnbV domain protein K21162 sgcE4; enediyne biosynthesis protein E4
C 01006 Prenyltransferases [BR:sbk01006]
D SHEWBE_1832 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D SHEWBE_4230 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D SHEWBE_1933 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D SHEWBE_1151 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SHEWBE_1991 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D SHEWBE_0028 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D SHEWBE_0758 cyoE; Protoheme IX farnesyltransferase 1 K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:sbk01007]
D SHEWBE_3451 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SHEWBE_2105 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SHEWBE_1251 yadB; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D SHEWBE_1599 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SHEWBE_0886 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SHEWBE_2110 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SHEWBE_0925 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SHEWBE_3050 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SHEWBE_1696 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SHEWBE_4179 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SHEWBE_4029 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SHEWBE_1311 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SHEWBE_2583 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SHEWBE_2844 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SHEWBE_3653 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SHEWBE_0584 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SHEWBE_0583 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SHEWBE_2641 serS; seryl-tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SHEWBE_1955 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SHEWBE_2629 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SHEWBE_3825 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SHEWBE_2442 pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SHEWBE_2443 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SHEWBE_2787 aspC; Aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SHEWBE_2173 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D SHEWBE_2827 yfbQ; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SHEWBE_2696 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SHEWBE_2452 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SHEWBE_0680 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D SHEWBE_3150 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D SHEWBE_1166 astC; Succinylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D SHEWBE_3152 bioA; 7,8-diaminopelargonic acid synthase, PLP-dependent K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D SHEWBE_1583 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D SHEWBE_0018 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_0123 ilvE; Branched-chain-amino-acid transaminase 1 K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SHEWBE_2475 conserved protein of unknown function, containing conserved domain of Pyridoxal phosphate-dependent transferase K03430 phnW; 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
D SHEWBE_0015 Alanine-glyoxylate aminotransferase apoenzyme K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SHEWBE_2788 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:sbk00194]
D SHEWBE_0527 atpC; F1 sector of membrane-bound ATP synthase, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D SHEWBE_0528 atpD; membrane-bound ATP synthase, F1 sector, beta-subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D SHEWBE_0529 atpG; membrane-bound ATP synthase, F1 sector, gamma-subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D SHEWBE_0530 atpA; membrane-bound ATP synthase, F1 sector, alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D SHEWBE_0531 atpH; F1 sector of membrane-bound ATP synthase, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D SHEWBE_0532 atpF; F0 sector of membrane-bound ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D SHEWBE_0533 atpE; membrane-bound ATP synthase, F0 sector, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D SHEWBE_0534 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SHEWBE_0535 atpI; ATP synthase protein I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:sbk03000]
D SHEWBE_3010 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SHEWBE_0887 Transcriptional regulator, LysR family protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SHEWBE_1839 gcvA; DNA-binding transcriptional dual regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SHEWBE_0023 ilvY; DNA-binding transcriptional dual regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D SHEWBE_4100 metR; DNA-binding transcriptional activator, homocysteine-binding K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D SHEWBE_1621 nhaR; DNA-binding transcriptional activator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D SHEWBE_1611 Transcriptional regulator, LysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D SHEWBE_2932 argP; HTH-type transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D SHEWBE_3215 cysB; DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D SHEWBE_4249 purR; HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D SHEWBE_0459 hutC; Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D SHEWBE_2473 fadR; DNA-binding transcriptional dual regulator of fatty acid metabolism K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D SHEWBE_0909 pdhR; Pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D SHEWBE_0202 ttk; division inhibitor K05501 slmA; TetR/AcrR family transcriptional regulator
D SHEWBE_1430 putative transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D SHEWBE_0119 nemR; HTH-type transcriptional repressor NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SHEWBE_3629 Transcriptional regulator, TetR family protein K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D SHEWBE_0357 fabR; DNA-binding transcriptional repressor K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D SHEWBE_1291 asnC; DNA-binding transcriptional dual regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D SHEWBE_2636 lrp; DNA-binding transcriptional dual regulator, leucine-binding K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SHEWBE_2184 Transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D SHEWBE_1305 ohrR; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D SHEWBE_1722 merR; Mercuric resistance operon regulatory protein K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D SHEWBE_2037 hmrR; HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SHEWBE_0049 zntR; DNA-binding transcriptional activator in response to Zn(II) K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D SHEWBE_3166 fur; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D SHEWBE_1173 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SHEWBE_2690 fnr; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D SHEWBE_3406 iscR; DNA-binding transcriptional repressor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D SHEWBE_0501 nsrR; HTH-type transcriptional regulator NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D SHEWBE_0969 arsR; Arsenic resistance transcriptional regulator ArsR2 K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D SHEWBE_0602 hlyU; Transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D SHEWBE_1692 hlyU; Transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D SHEWBE_2616 yebK; putative DNA-binding transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D SHEWBE_0340 birA; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor, bio-5'-AMP-binding K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SHEWBE_4509 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SHEWBE_1662 trpR; Trp operon repressor homolog K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D SHEWBE_3587 putative DNA-binding response regulator in two-component system K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D SHEWBE_0825 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D SHEWBE_4304 norR; DNA-binding transcriptional activator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D SHEWBE_1424 luxO; Regulatory protein LuxO K12266 norR; anaerobic nitric oxide reductase transcription regulator
D SHEWBE_2096 cdaR; Carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D SHEWBE_1888 higA; Antitoxin igA-2 K07726 K07726; putative transcriptional regulator
D SHEWBE_0090 Uncharacterized HTH-type transcriptional regulator YozG (fragment) K07727 K07727; putative transcriptional regulator
D SHEWBE_0384 conserved protein of unknown function K07729 K07729; putative transcriptional regulator
D SHEWBE_4434 metJ; DNA-binding transcriptional repressor, S-adenosylmethionine-binding K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D SHEWBE_1221 Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D SHEWBE_3978 bolA; DNA-binding transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D SHEWBE_0536 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SHEWBE_3546 rfaH; Transcription antitermination protein RfaH K05785 rfaH; transcriptional antiterminator RfaH
D SHEWBE_4232 argR; DNA-binding transcriptional dual regulator, L-arginine-binding K03402 argR; transcriptional regulator of arginine metabolism
D SHEWBE_3459 tyrR; Transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D SHEWBE_2927 putative Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D SHEWBE_2131 pspF; DNA-binding transcriptional activator K03974 pspF; psp operon transcriptional activator
D SHEWBE_2135 Phage shock protein C (PspC) family protein K03973 pspC; phage shock protein C
D SHEWBE_1779 yqgE; hypothetical protein K07735 algH; putative transcriptional regulator
D SHEWBE_4341 conserved protein of unknown function, might belong to Transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D SHEWBE_1252 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D SHEWBE_3856 nrdR; transcriptional repressor of nrd genes K07738 nrdR; transcriptional repressor NrdR
D SHEWBE_3000 conserved protein of unknown function K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D SHEWBE_0180 mraZ; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:sbk03021]
D SHEWBE_0299 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SHEWBE_0331 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SHEWBE_0329 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SHEWBE_0217 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SHEWBE_1565 rpoD; RNA polymerase, sigma 70 (sigma D) factor K03086 rpoD; RNA polymerase primary sigma factor
D SHEWBE_3831 rpoS; RNA polymerase, sigma S (sigma 38) factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D SHEWBE_2201 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D SHEWBE_3796 RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D SHEWBE_1625 rpoE; RNA polymerase, sigma 24 (sigma E) factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D SHEWBE_0795 rpoH; RNA polymerase, sigma 32 (sigma H) factor K03089 rpoH; RNA polymerase sigma-32 factor
D SHEWBE_1074 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D SHEWBE_3564 fliA; RNA polymerase, sigma 28 (sigma F) factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D SHEWBE_1000 hepA; RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D SHEWBE_3932 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D SHEWBE_3851 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D SHEWBE_0336 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D SHEWBE_1160 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D SHEWBE_1161 sspB; ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D SHEWBE_3474 Response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D SHEWBE_3477 Anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist
D SHEWBE_3475 conserved protein of unknown function, might belong to anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D SHEWBE_1626 Anti-sigma-E factor RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
D SHEWBE_1627 Sigma-E factor regulatory protein RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D SHEWBE_1628 Sigma-E factor regulatory protein RseC K03803 rseC; sigma-E factor negative regulatory protein RseC
D SHEWBE_4341 conserved protein of unknown function, might belong to Transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D SHEWBE_1252 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D SHEWBE_3941 greA; transcription elongation factor, cleaves 3' nucleotide of paused mRNA K03624 greA; transcription elongation factor GreA
D SHEWBE_0738 greB; transcription elongation factor K04760 greB; transcription elongation factor GreB
D SHEWBE_2672 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D SHEWBE_4499 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:sbk03019]
D SHEWBE_3032 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D SHEWBE_0955 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D SHEWBE_1631 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SHEWBE_1099 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SHEWBE_1144 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D SHEWBE_4497 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D SHEWBE_2884 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_3446 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_3882 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_1216 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_1537 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_1737 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SHEWBE_4421 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SHEWBE_2805 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SHEWBE_0193 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SHEWBE_3839 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SHEWBE_3926 pnp; polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D SHEWBE_2672 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D SHEWBE_4499 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D SHEWBE_3947 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D SHEWBE_1012 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SHEWBE_1153 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D SHEWBE_1250 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D SHEWBE_1615 nudH; (di)nucleoside polyphosphate hydrolase (Ap5A pyrophosphatase) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D SHEWBE_3779 conserved protein of unknown function, might belong to Carbon storage regulator homolog K03563 csrA; carbon storage regulator
D SHEWBE_3824 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator
D SHEWBE_0930 MSHA biogenesis protein MshH K18765 csrD; RNase E specificity factor CsrD
D SHEWBE_2542 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase K02553 rraA; regulator of ribonuclease activity A
D SHEWBE_4480 rraA; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A
D SHEWBE_0994 yjgD; conserved hypothetical protein K09893 rraB; regulator of ribonuclease activity B
D SHEWBE_1071 yhbJ; hypothetical protein; putative nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ
D SHEWBE_2492 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D SHEWBE_1260 hrpB; ATP-dependent (RNA) helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D SHEWBE_MISCRNA6 Spot_42 K18527 spf; small regulatory RNA Spot 42
C 03041 Spliceosome
C 03011 Ribosome [BR:sbk03011]
D SHEWBE_2784 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D SHEWBE_1929 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D SHEWBE_0317 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D SHEWBE_0300 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D SHEWBE_0306 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D SHEWBE_1105 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D SHEWBE_0327 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D SHEWBE_0309 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D SHEWBE_1095 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D SHEWBE_0324 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D SHEWBE_0301 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D SHEWBE_0328 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D SHEWBE_0302 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D SHEWBE_0310 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D SHEWBE_3928 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D SHEWBE_1648 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D SHEWBE_0314 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D SHEWBE_1107 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D SHEWBE_0319 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D SHEWBE_1693 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D SHEWBE_1568 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D SHEWBE_0334 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D SHEWBE_0320 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D SHEWBE_0323 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D SHEWBE_0322 rplD; 50S ribosomal protein L4, regulates expression of S10 operon K02926 RP-L4; large subunit ribosomal protein L4
D SHEWBE_0311 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D SHEWBE_0308 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D SHEWBE_1108 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D SHEWBE_0333 50S ribosomal subunit protein L10 (modular protein) K02864 RP-L10; large subunit ribosomal protein L10
D SHEWBE_0335 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D SHEWBE_0332 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D SHEWBE_1094 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D SHEWBE_0313 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D SHEWBE_0304 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D SHEWBE_0316 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D SHEWBE_0298 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D SHEWBE_0307 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D SHEWBE_1651 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D SHEWBE_2633 rplT; 50S ribosomal protein L20, also posttranslational autoregulator K02887 RP-L20; large subunit ribosomal protein L20
D SHEWBE_4228 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D SHEWBE_0318 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D SHEWBE_0321 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D SHEWBE_0312 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D SHEWBE_4227 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D SHEWBE_0198 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D SHEWBE_0315 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D SHEWBE_0305 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D SHEWBE_0928 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D SHEWBE_3025 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D SHEWBE_0197 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D SHEWBE_0575 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D SHEWBE_2632 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D SHEWBE_2950 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D SHEWBE_RRNA15 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA7 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA21 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA25 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA28 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA31 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA32 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA10 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA22 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA4 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA18 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA12 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA3 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA6 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA13 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA16 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA23 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA26 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA29 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA34 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA19 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA9 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA11 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA5 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA8 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA14 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA20 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA24 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA27 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA30 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA33 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA17 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:sbk03009]
D SHEWBE_1631 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SHEWBE_4291 conserved protein of unknown function K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D SHEWBE_1144 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D SHEWBE_1632 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D SHEWBE_4226 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
D SHEWBE_4341 conserved protein of unknown function, might belong to Transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D SHEWBE_1252 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D SHEWBE_3932 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
D SHEWBE_3851 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D SHEWBE_0336 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D SHEWBE_3872 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SHEWBE_4072 rsuA; 16S rRNA pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SHEWBE_4189 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SHEWBE_4317 putative ribosomal RNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SHEWBE_4218 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SHEWBE_2883 putative tRNA/rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SHEWBE_0623 rsmB; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SHEWBE_1809 putative NOL1/NOP2/sun family RNA methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SHEWBE_4367 rsmC; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SHEWBE_0789 Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SHEWBE_4360 yggJ; hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SHEWBE_3041 yebU; putative RNA AdoMet-dependent methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D SHEWBE_0538 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SHEWBE_0179 mraW; S-adenosyl-dependent methyltransferase activity on membrane-located substrates K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SHEWBE_0893 yraL; putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SHEWBE_0731 yhiQ; putative SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D SHEWBE_2425 rrmA; 23S rRNA m1G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SHEWBE_1575 putative Ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SHEWBE_1100 rlmB; 23S rRNA (Gm2251)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SHEWBE_3939 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D SHEWBE_0446 rlmF; Ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D SHEWBE_3980 rlmG; Ribosomal RNA large subunit methyltransferase G K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D SHEWBE_4035 ybeA; conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SHEWBE_2488 yccW; putative AdoMet-dependent methyltransferase, UPF0064 family K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SHEWBE_3386 conserved protein of unknown function K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SHEWBE_1057 conserved protein of unknown function K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SHEWBE_0730 rlmJ; Ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D SHEWBE_2402 ycbY; Ribosomal RNA large subunit methyltransferase K/L [Includes: 23S rRNA m2G2445 methyltransferase; 23S rRNA m7G2069 methyltransferase] K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D SHEWBE_1842 ygdE; putative methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D SHEWBE_3657 yfgB; putative Fe-S containing enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SHEWBE_3843 rumA; 23S rRNA (uracil-5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SHEWBE_2720 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_3426 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_4448 YabO/YceC/SfhB family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_0409 Uncharacterized RNA pseudouridine synthase HI_0042 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_1292 rluA; pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_1986 Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_3243 rluB; 23S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SHEWBE_3031 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D SHEWBE_4066 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SHEWBE_2369 ymfC; 23S rRNA pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D SHEWBE_1315 rluE; Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D SHEWBE_3076 exported protein of unknown function K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D SHEWBE_4045 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D SHEWBE_1649 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D SHEWBE_3348 conserved protein of unknown function K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D SHEWBE_4507 prmA; methylase for 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D SHEWBE_2217 prmB; N5-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D SHEWBE_2365 ycfD; conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D SHEWBE_2894 roxA; 50S ribosomal protein L16 3-hydroxylase K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D SHEWBE_3032 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
D SHEWBE_0955 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D SHEWBE_1778 yqgF; Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D SHEWBE_1214 dbpA; ATP-dependent RNA helicase, specific for 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D SHEWBE_4421 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SHEWBE_1467 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D SHEWBE_1143 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D SHEWBE_3650 der; GTPase involved in ribosome synthesis and maintenance K03977 engA; GTPase
D SHEWBE_3035 rbgA; Ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A
D SHEWBE_1154 hflX; putative GTPase K03665 hflX; GTPase
D SHEWBE_0630 tsaC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SHEWBE_0218 spoT; bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D SHEWBE_3930 rbfA; 30s ribosome binding factor K02834 rbfA; ribosome-binding factor A
D SHEWBE_3933 yhbC; conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D SHEWBE_2165 conserved protein of unknown function K14761 rlbA; ribosome-associated protein
D SHEWBE_4033 ybeB; hypothetical protein K09710 ybeB; ribosome-associated protein
D SHEWBE_4021 ybeY; putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
D SHEWBE_3940 yhbY; putative RNA-binding protein K07574 yhbY; RNA-binding protein
D SHEWBE_2189 conserved protein of unknown function K14762 yibL; ribosome-associated protein
D SHEWBE_0966 conserved protein of unknown function K09889 yjgA; ribosome-associated protein
D SHEWBE_1073 yhbH; ribosome-associated, sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D SHEWBE_3787 Ribosomal subunit interface protein K05809 raiA; ribosome-associated inhibitor A
D SHEWBE_1658 yfiA; cold shock protein associated with 30S ribosomal subunit K05809 raiA; ribosome-associated inhibitor A
D SHEWBE_4015 putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
D SHEWBE_3026 yceD; conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:sbk03016]
D SHEWBE_1578 cca; fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D SHEWBE_3451 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SHEWBE_1955 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SHEWBE_1696 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SHEWBE_4029 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SHEWBE_3050 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SHEWBE_2105 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SHEWBE_0925 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SHEWBE_1311 lysS; lysine tRNA synthetase, constitutive K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SHEWBE_2583 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SHEWBE_3825 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SHEWBE_2844 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SHEWBE_2629 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SHEWBE_2641 serS; seryl-tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SHEWBE_2110 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SHEWBE_4179 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SHEWBE_3653 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SHEWBE_2442 pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SHEWBE_2443 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SHEWBE_1599 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SHEWBE_0886 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SHEWBE_0250 dtd; D-tyr-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D SHEWBE_3129 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D SHEWBE_1760 yggH; tRNA (m7G46) methyltransferase, SAM-dependent K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SHEWBE_1962 yaeB; conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D SHEWBE_2238 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SHEWBE_3929 truB; tRNA pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D SHEWBE_3835 truD; pseudoruidine synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D SHEWBE_3405 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SHEWBE_4452 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SHEWBE_0630 tsaC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SHEWBE_1151 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SHEWBE_0571 trmE; GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SHEWBE_0539 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SHEWBE_0359 selD; selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D SHEWBE_0362 cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D SHEWBE_0574 rnpA; protein C5 component of RNase P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D SHEWBE_MISCRNA7 RNaseP_bact_a K01978 rnpB; M1 RNA
D SHEWBE_2328 rnt; ribonuclease T (RNase T) K03683 rnt; ribonuclease T [EC:3.1.13.-]
D SHEWBE_0205 rph; ribonuclease PH (RNase PH), tRNA nucleotidyltransferase K00989 rph; ribonuclease PH [EC:2.7.7.56]
D SHEWBE_2464 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D SHEWBE_1258 RNA 2',3'-cyclic phosphodiesterase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D SHEWBE_3860 yjjK; fused putative transporter subunits of ABC superfamily: ATP-binding components K06020 ettA; energy-dependent translational throttle protein EttA
D SHEWBE_0584 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SHEWBE_0583 glyS; glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SHEWBE_1251 yadB; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D SHEWBE_0588 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D SHEWBE_3054 conserved protein of unknown function,might belong to YbaK/prolyl-tRNA synthetase associated region K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D SHEWBE_1475 conserved protein of unknown function, low identity with Prolyl-tRNA synthetase K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D SHEWBE_1806 conserved protein of unknown function K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D SHEWBE_3639 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D SHEWBE_1120 yjbN; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D SHEWBE_4508 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D SHEWBE_3238 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D SHEWBE_4019 putative tRNA-i(6)A37 modification enzyme (MiaB) K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D SHEWBE_2581 yecO; AdoMet-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D SHEWBE_2580 yecP; conserved hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D SHEWBE_2701 lasT; Uncharacterized tRNA/rRNA methyltransferase LasT K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D SHEWBE_0356 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D SHEWBE_1650 trmD; tRNA (guanine-1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D SHEWBE_0221 trmH; tRNA (Guanosine-2'-O-)-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D SHEWBE_3408 yfhQ; putative methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D SHEWBE_0819 yibK; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D SHEWBE_1468 tRNA1(Val) (adenine(37)-N6)-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D SHEWBE_1920 truC; tRNA pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D SHEWBE_2720 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_3426 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_4448 YabO/YceC/SfhB family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_0409 Uncharacterized RNA pseudouridine synthase HI_0042 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_1292 rluA; pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_1986 Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SHEWBE_2368 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SHEWBE_2692 ydaO; putative C32 tRNA thiolase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D SHEWBE_2934 conserved protein of unknown function K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SHEWBE_0587 tusA; sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SHEWBE_2644 dsrH; Sulfurtransferase complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D SHEWBE_2645 conserved protein of unknown function K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D SHEWBE_2646 tusD; methylsulfur transfer protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D SHEWBE_2643 tusE; subunit of enzyme for 2-thio modification of mnm5s2U of tRNA anticodon U K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D SHEWBE_3403 iscA; iron-binding protein, believed to be involved in Fe-S protein formation or repair K13628 iscA; iron-sulfur cluster assembly protein
D SHEWBE_4340 tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D SHEWBE_2107 miaE; tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D SHEWBE_2224 mnmC; tRNA (mnm(5)s(2)U34)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D SHEWBE_3423 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D SHEWBE_2603 queC; queuosine biosynthesis protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D SHEWBE_2605 ygcF; conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D SHEWBE_1909 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D SHEWBE_4090 yjeS; putative Fe-S electron transport protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D SHEWBE_0360 selU; tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D SHEWBE_3422 tgt; queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme) K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SHEWBE_1836 thiI; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SHEWBE_1945 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D SHEWBE_2458 yeaZ; putative peptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D SHEWBE_1569 putative O-sialoglycoprotein endopeptidase gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D SHEWBE_1148 yjeE; ATPase with strong ADP affinity K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D SHEWBE_4385 ygdL; conserved hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D SHEWBE_1099 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SHEWBE_3926 pnp; polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:sbk03012]
D SHEWBE_1780 yciH; conserved hypothetical protein K03113 EIF1; translation initiation factor 1
D SHEWBE_3931 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D SHEWBE_2630 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D SHEWBE_1190 putative transporter subunits of ABC superfamily: ATP-binding components, yheS K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D SHEWBE_1930 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D SHEWBE_0325 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D SHEWBE_0338 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D SHEWBE_2895 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D SHEWBE_0326 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D SHEWBE_4007 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D SHEWBE_1932 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D SHEWBE_4006 prmC; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D SHEWBE_4016 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D SHEWBE_2376 infA; protein chain initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D SHEWBE_2292 yeiP; putative translation elongation factor K02356 efp; elongation factor P
D SHEWBE_2824 efp; Elongation factor P K02356 efp; elongation factor P
D SHEWBE_1310 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D SHEWBE_3923 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D SHEWBE_4463 arfB; Peptidyl-tRNA hydrolase ArfB K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:sbk03110]
D SHEWBE_2375 clpA; ATP-binding protease component K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D SHEWBE_4064 clpB; protein disaggregation chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D SHEWBE_2115 clpX; ATP-dependent Clp protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D SHEWBE_0922 hslU; ATP-dependent protease ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D SHEWBE_3225 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D SHEWBE_3947 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D SHEWBE_3401 hscA; DnaK-like molecular chaperone specific for IscU K04044 hscA; molecular chaperone HscA
D SHEWBE_3053 yegD; putative chaperone K04046 yegD; hypothetical chaperone protein
D SHEWBE_1012 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SHEWBE_3946 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D SHEWBE_4212 djlA; DnaJ-like protein, membrane anchored K05801 djlA; DnaJ like chaperone protein
D SHEWBE_3402 hscB; Co-chaperone protein HscB homolog K04082 hscB; molecular chaperone HscB
D SHEWBE_0380 hslO; heat shock protein Hsp33 K04083 hslO; molecular chaperone Hsp33
D SHEWBE_1830 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D SHEWBE_3062 ibpA; heat shock chaperone K04080 ibpA; molecular chaperone IbpA
D SHEWBE_0379 hslR; ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D SHEWBE_1011 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES
D SHEWBE_3938 ftsH; protease, ATP-dependent zinc-metallo K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D SHEWBE_0534 atpB; F0 sector of membrane-bound ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SHEWBE_0495 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D SHEWBE_0833 putative Spheroplast protein y K06006 cpxP; periplasmic protein CpxP/Spy
D SHEWBE_1124 conserved exported protein of unknown function K09796 pccA; periplasmic copper chaperone A
D SHEWBE_3880 torD; Chaperone protein TorD K03533 torD; TorA specific chaperone
D SHEWBE_1289 Serine protease, subtilase family protein K14647 vpr; minor extracellular serine protease Vpr [EC:3.4.21.-]
D SHEWBE_3987 cyp; Peptidyl-prolyl cis-trans isomerase cyp18 K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SHEWBE_1510 Peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SHEWBE_1036 ppiB; peptidyl-prolyl cis-trans isomerase B (rotamase B) K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D SHEWBE_2109 ppiB; peptidyl-prolyl cis-trans isomerase B (rotamase B) K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D SHEWBE_2118 Peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D SHEWBE_0082 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D SHEWBE_1526 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D SHEWBE_3945 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D SHEWBE_1698 fkpB; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D SHEWBE_3070 Peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D SHEWBE_1664 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D SHEWBE_2163 ppiC; Peptidyl-prolyl cis-trans isomerase C K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D SHEWBE_4137 ppiC; peptidyl-prolyl cis-trans isomerase C (rotamase C) K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D SHEWBE_4216 surA; peptidyl-prolyl cis-trans isomerase (PPIase) K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D SHEWBE_4498 trxA; thioredoxin 1 K03671 TXN; thioredoxin
D SHEWBE_3224 conserved protein of unknown function K05838 ybbN; putative thioredoxin
D SHEWBE_2348 grxA; glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) K03674 grxA; glutaredoxin 1
D SHEWBE_2944 ydhD; monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D SHEWBE_0130 Thiol:disulfide interchange protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D SHEWBE_2471 dsbB; oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D SHEWBE_1472 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D SHEWBE_4394 dipZ; Thiol:disulfide interchange protein: activator of DsbC K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D SHEWBE_0284 ccmG; periplasmic thioredoxin of cytochrome c-type biogenesis K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:sbk04131]
D SHEWBE_3398 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SHEWBE_4327 mneA; putative manganese exporter K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D SHEWBE_2697 gap; Glyceraldehyde-3-phosphate dehydrogenase-like protein K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SHEWBE_2699 cbbGC; Glyceraldehyde-3-phosphate dehydrogenase, chromosomal K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SHEWBE_2615 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SHEWBE_3225 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:sbk03051]
D SHEWBE_3225 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:sbk03032]
D SHEWBE_2056 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D SHEWBE_3010 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SHEWBE_0211 Atp-dependent rna helicase, eif-4a family protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D SHEWBE_0976 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D SHEWBE_2117 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHEWBE_2444 himA; integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication K04764 ihfA; integration host factor subunit alpha
D SHEWBE_2783 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D SHEWBE_0576 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D SHEWBE_1110 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D SHEWBE_1566 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D SHEWBE_4415 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SHEWBE_1944 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SHEWBE_0577 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SHEWBE_4178 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SHEWBE_4031 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SHEWBE_3044 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SHEWBE_2896 putative DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_3294 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_3230 DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SHEWBE_1943 rnhB; ribonuclease HII, degrades RNA of DNA-RNA hybrids K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D SHEWBE_0675 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SHEWBE_3338 DNA ligase, NAD(+)-dependent (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SHEWBE_2730 DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein
D SHEWBE_0880 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SHEWBE_2818 seqA; Negative modulator of initiation of replication K03645 seqA; negative modulator of initiation of replication
D SHEWBE_2942 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D SHEWBE_2789 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D SHEWBE_0579 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D SHEWBE_1134 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SHEWBE_1132 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SHEWBE_3217 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D SHEWBE_2244 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:sbk03036]
D SHEWBE_3010 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SHEWBE_1631 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SHEWBE_1968 hns; global nucleic acid-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS
D SHEWBE_0976 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D SHEWBE_2117 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHEWBE_2444 himA; integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication K04764 ihfA; integration host factor subunit alpha
D SHEWBE_2783 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D SHEWBE_0576 dnaA; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator K02313 dnaA; chromosomal replication initiator protein
D SHEWBE_0890 gmhA; Phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein
D SHEWBE_4509 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SHEWBE_1153 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D SHEWBE_2932 argP; HTH-type transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D SHEWBE_2636 lrp; DNA-binding transcriptional dual regulator, leucine-binding K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SHEWBE_2296 yejK; nucleotide associated protein K06899 ndpA; nucleoid-associated protein
D SHEWBE_3340 smc; Chromosome partition protein Smc K03529 smc; chromosome segregation protein
D SHEWBE_3245 scpA; Segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D SHEWBE_3244 scpB; Segregation and condensation protein B homolog K06024 scpB; segregation and condensation protein B
D SHEWBE_0168 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D SHEWBE_3838 ftsB; cell division protein K05589 ftsB; cell division protein FtsB
D SHEWBE_0792 ftsE; Cell division ABC transporter, ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SHEWBE_0177 ftsI; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D SHEWBE_2637 putative DNA translocase FtsK FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D SHEWBE_0178 ftsL; Cell division protein FtsL K03586 ftsL; cell division protein FtsL
D SHEWBE_0924 conserved protein of unknown function, containing the Sporulation-related domain K03591 ftsN; cell division protein FtsN
D SHEWBE_0169 ftsQ; Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D SHEWBE_0172 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; cell division protein FtsW
D SHEWBE_0793 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D SHEWBE_0167 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D SHEWBE_3339 zipA; Cell division protein ZipA K03528 zipA; cell division protein ZipA
D SHEWBE_1355 Cell division protein ZapA K09888 zapA; cell division protein ZapA
D SHEWBE_0128 zapB; Cell division protein ZapB K09892 zapB; cell division protein ZapB
D SHEWBE_2401 zapC; Cell division protein ZapC K18657 zapC; cell division protein ZapC
D SHEWBE_0899 zapD; Cell division protein ZapD K18778 zapD; cell division protein ZapD
D SHEWBE_4307 conserved protein of unknown function K06916 zapE; cell division protein ZapE
D SHEWBE_1093 yhcM; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K06916 zapE; cell division protein ZapE
D SHEWBE_1149 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D SHEWBE_2771 putative acriflavine resistance protein E K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_2924 HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_0721 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_1795 Efflux transporter, MFP subunit, AcrA/E family protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_2467 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC
D SHEWBE_2466 minD; cell division inhibitor, a membrane ATPase,activates minC K03609 minD; septum site-determining protein MinD
D SHEWBE_2465 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D SHEWBE_0771 Cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA
D SHEWBE_0202 ttk; division inhibitor K05501 slmA; TetR/AcrR family transcriptional regulator
D SHEWBE_2818 seqA; Negative modulator of initiation of replication K03645 seqA; negative modulator of initiation of replication
D SHEWBE_0951 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D SHEWBE_0952 Cell shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D SHEWBE_0953 mreD; cell wall structural complex MreBCD transmembrane component MreD K03571 mreD; rod shape-determining protein MreD
D SHEWBE_4037 mrdB; cell wall shape-determining protein K05837 rodA; rod shape determining protein RodA
D SHEWBE_3412 conserved protein of unknown function K03496 parA; chromosome partitioning protein
D SHEWBE_3558 ParA family protein K03496 parA; chromosome partitioning protein
D SHEWBE_3665 Plasmid segregation oscillating ATPase ParF K03496 parA; chromosome partitioning protein
D SHEWBE_0537 conserved protein of unknown function K03496 parA; chromosome partitioning protein
D SHEWBE_0536 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SHEWBE_1134 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SHEWBE_1132 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SHEWBE_0539 gidA; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SHEWBE_0538 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SHEWBE_4513 xerC; site-specific tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D SHEWBE_1471 xerD; site-specific tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D SHEWBE_1507 Site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D SHEWBE_2009 Site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D SHEWBE_3049 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D SHEWBE_2415 conserved protein of unknown function, might beong to Adenosine monophosphate-protein transferase K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D SHEWBE_0674 yihA; GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:sbk03400]
D SHEWBE_3447 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SHEWBE_1346 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D SHEWBE_1758 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D SHEWBE_2592 nth; endonuclease III DNA glycosylase/apyrimidinic (AP) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D SHEWBE_0211 Atp-dependent rna helicase, eif-4a family protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
D SHEWBE_0897 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SHEWBE_0201 dut; deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SHEWBE_0585 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D SHEWBE_0699 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D SHEWBE_3264 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D SHEWBE_1669 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D SHEWBE_1473 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SHEWBE_3338 DNA ligase, NAD(+)-dependent (modular protein) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SHEWBE_0675 polA; fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SHEWBE_4417 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D SHEWBE_2601 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D SHEWBE_2421 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C
D SHEWBE_0029 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SHEWBE_0331 rpoB; DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SHEWBE_0329 rpoC; DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SHEWBE_0299 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SHEWBE_0217 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SHEWBE_3208 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D SHEWBE_3830 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D SHEWBE_1150 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D SHEWBE_1613 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D SHEWBE_3013 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D SHEWBE_3642 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D SHEWBE_1833 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D SHEWBE_1944 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SHEWBE_0577 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SHEWBE_4178 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SHEWBE_4031 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SHEWBE_3044 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SHEWBE_2896 putative DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_3294 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SHEWBE_3230 DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SHEWBE_4415 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SHEWBE_0880 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SHEWBE_2525 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D SHEWBE_2526 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D SHEWBE_2524 recD; exonuclease V (RecBCD complex), alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D SHEWBE_3828 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D SHEWBE_2586 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D SHEWBE_2587 ruvB; holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D SHEWBE_2585 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D SHEWBE_0926 priA; Primosome factor n' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D SHEWBE_1106 priB; primosomal protein N K02686 priB; primosomal replication protein N
D SHEWBE_2147 putative Primosomal replication protein n'' K04067 priC; primosomal replication protein N''
D SHEWBE_2175 putative Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
D SHEWBE_2174 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D SHEWBE_3911 radA; repair protein radA homolog K04485 radA; DNA repair protein RadA/Sms
D SHEWBE_0578 recF; gap repair protein K03629 recF; DNA replication and repair protein RecF
D SHEWBE_0229 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SHEWBE_1633 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D SHEWBE_3226 recR; gap repair protein K06187 recR; recombination protein RecR
D SHEWBE_3847 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D SHEWBE_1856 rdgC; DNA-binding protein, non-specific K03554 rdgC; recombination associated protein RdgC
D SHEWBE_3714 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D SHEWBE_2349 yejH; putative nucleic acid ATP-dependent helicase K19789 radD; DNA repair protein RadD
D SHEWBE_2789 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D SHEWBE_0579 gyrB; DNA gyrase, subunit B (type II topoisomerase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D SHEWBE_3217 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D SHEWBE_0976 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D SHEWBE_2117 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHEWBE_4509 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SHEWBE_2444 himA; integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication K04764 ihfA; integration host factor subunit alpha
D SHEWBE_2783 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D SHEWBE_2805 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SHEWBE_0193 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SHEWBE_1968 hns; global nucleic acid-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS
D SHEWBE_3963 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D SHEWBE_2990 Peptidase S24, S26A and S26B K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D SHEWBE_0772 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D SHEWBE_2150 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D SHEWBE_2252 Regulatory protein RecX K03565 recX; regulatory protein
D SHEWBE_0009 rep; DNA helicase and single-stranded DNA-dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D SHEWBE_2728 UvrD/REP helicase family protein K03658 helD; DNA helicase IV [EC:5.6.2.4]
D SHEWBE_2149 dinG; putative ATP-dependent helicase DinG homolog K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D SHEWBE_2457 yoaA; putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D SHEWBE_2793 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SHEWBE_2794 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:sbk03029]
D SHEWBE_1158 petB; Cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D SHEWBE_3931 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D SHEWBE_2630 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D SHEWBE_1930 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D SHEWBE_0325 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D SHEWBE_0338 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D SHEWBE_2895 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D SHEWBE_0326 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D SHEWBE_1632 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D SHEWBE_1599 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SHEWBE_4029 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SHEWBE_2583 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SHEWBE_0925 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SHEWBE_4415 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SHEWBE_1937 yaeT; outer membrane protein assembly factor K07277 SAM50; outer membrane protein insertion porin family
D SHEWBE_3947 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D SHEWBE_1830 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D SHEWBE_1012 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SHEWBE_1011 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES
D SHEWBE_3946 dnaJ; chaperone Hsp40, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D SHEWBE_3405 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SHEWBE_4452 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SHEWBE_3402 hscB; Co-chaperone protein HscB homolog K04082 hscB; molecular chaperone HscB
D SHEWBE_2944 ydhD; monothiol glutaredoxin K07390 grxD; monothiol glutaredoxin
D SHEWBE_3049 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D SHEWBE_0758 cyoE; Protoheme IX farnesyltransferase 1 K02257 COX10; heme o synthase [EC:2.5.1.141]
D SHEWBE_0767 ctaG; Cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D SHEWBE_0759 putative Cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D SHEWBE_0572 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SHEWBE_0762 conserved protein of unknown function, might be SURF1-like protein K14998 SURF1; surfeit locus 1 family protein
D SHEWBE_0548 SCO family protein K07152 SCO1; protein SCO1
D SHEWBE_0757 SCO1/SenC family protein K07152 SCO1; protein SCO1
D SHEWBE_3225 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:sbk02000]
D SHEWBE_3201 msbA; fused lipid transporter subunits of ABC superfamily: membrane component; ATP-binding component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D SHEWBE_4159 putative ABC transporter, ATP-binding protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D SHEWBE_3450 conserved membrane protein of unknown function, containing ABC transporter family ATP binding domain and transmembrane domain K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D SHEWBE_1320 putative ABC transporter, ATP-binding/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D SHEWBE_0002 Toxin secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SHEWBE_1220 cydC; cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D SHEWBE_1219 cydD; cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D SHEWBE_2404 uup; ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein
D SHEWBE_0415 putative molybdate transporter subunit; periplasmic-binding component of ABC superfamily modA K02020 modA; molybdate transport system substrate-binding protein
D SHEWBE_0414 putative molybdate transporter subunit; membrane component of ABC superfamily modB K02018 modB; molybdate transport system permease protein
D SHEWBE_0413 putative transporter subunit: ATP-binding component of ABC superfamily transporter K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D SHEWBE_0705 conserved exported protein of unknown function, might belong to Extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein
D SHEWBE_0704 ABC transporter, permease protein K05773 tupB; tungstate transport system permease protein
D SHEWBE_0703 ABC transporter, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D SHEWBE_4154 putative Ferric iron ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D SHEWBE_4153 putative ferric ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D SHEWBE_4152 fbpC; Fe(3+) ions import ATP-binding protein FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D SHEWBE_3758 conserved protein of unknown function, might belong to ABC nitrate/nitrite/cyanate family transporter, periplasmic ligand binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D SHEWBE_4125 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D SHEWBE_4123 putative ABC-type transport system, permease component K23535 nupB; general nucleoside transport system permease protein
D SHEWBE_4122 putative ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D SHEWBE_4124 putative ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D SHEWBE_1238 YbbM family integral membrane protei K02069 STAR2; UDP-glucose/iron transport system permease protein
D SHEWBE_1083 yrbD; toluene transporter subunit: membrane component of ABC superfamily K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D SHEWBE_1082 yrbE; toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D SHEWBE_1081 yrbF; toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D SHEWBE_1084 putative toluene transporter subunit, yrbC: membrane component of ABC superfamily K07323 mlaC; phospholipid transport system substrate-binding protein
D SHEWBE_1085 SpoIIAA family protein K07122 mlaB; phospholipid transport system transporter-binding protein
D SHEWBE_1861 pstS; Phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D SHEWBE_2067 putative phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D SHEWBE_2073 putative phosphate transport system permease protein, doubled length compared to homologues, 5' end have no conserved domain K02038 pstA; phosphate transport system permease protein
D SHEWBE_2074 pstB; phosphate transporter subunit; ATP-binding component of ABC superfamily K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SHEWBE_2278 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D SHEWBE_2280 putative ABC-type phosphate/phosphonate transport system, permease component K02042 phnE; phosphonate transport system permease protein
D SHEWBE_2279 putative phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D SHEWBE_3081 conserved protein of unknown function K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SHEWBE_3873 putative Extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SHEWBE_1028 ABC-type amino acid transport/signal transduction system, periplasmic component/domain (fragment) K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SHEWBE_1736 conserved exported protein of unknown function K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SHEWBE_2130 dppA; dipeptide transporter; periplasmic-binding component of ABC superfamily K19226 sapA; cationic peptide transport system substrate-binding protein
D SHEWBE_2129 sapB; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19227 sapB; cationic peptide transport system permease protein
D SHEWBE_2128 sapC; antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter K19228 sapC; cationic peptide transport system permease protein
D SHEWBE_2127 sapD; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19229 sapD; cationic peptide transport system ATP-binding protein
D SHEWBE_2125 sapF; antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter K19230 sapF; cationic peptide transport system ATP-binding protein
D SHEWBE_1866 Peptidase, M1 family protein (fragment) K02032 ddpF; peptide/nickel transport system ATP-binding protein
D SHEWBE_1377 putative iron-dicitrate transporter subunit; membrane component of ABC superfamily fecC K02015 ABC.FEV.P; iron complex transport system permease protein
D SHEWBE_1376 putative iron-hydroxamate transporter subunit; ATP-binding component of ABC superfamily fhuC K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D SHEWBE_1384 putative vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily btuF K06858 btuF; vitamin B12 transport system substrate-binding protein
D SHEWBE_0991 conserved periplasmic protein of unknown function, containing conserved domain of Periplasmic solute binding protein family, might be component of ABC transporter K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D SHEWBE_0992 conserved membrane protein of unknown function, containing conserved domain of ABC transporter K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D SHEWBE_4169 conserved membrane protein of unknown function K07091 lptF; lipopolysaccharide export system permease protein
D SHEWBE_4168 yjgQ; conserved hypothetical protein; putative inner membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D SHEWBE_1075 lptB; Lipopolysaccharide export system ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D SHEWBE_0479 putative Transport protein K09696 natB; sodium transport system permease protein
D SHEWBE_0477 natA; ABC transporter ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D SHEWBE_0074 nosY; putative ABC transporter permease protein NosY K19341 nosY; Cu-processing system permease protein
D SHEWBE_0075 nosF; putative ABC transporter ATP-binding protein NosF K19340 nosF; Cu-processing system ATP-binding protein
D SHEWBE_3204 lolE; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D SHEWBE_3206 lolC; outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily K09808 lolC_E; lipoprotein-releasing system permease protein
D SHEWBE_3205 lolD; outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D SHEWBE_0291 ccmD; cytochrome c biogenesis protein K02196 ccmD; heme exporter protein D
D SHEWBE_0290 ccmC; heme exporter subunit; membrane component of ABC superfamily K02195 ccmC; heme exporter protein C
D SHEWBE_0289 ccmB; heme exporter subunit; membrane component of ABC superfamily K02194 ccmB; heme exporter protein B
D SHEWBE_0288 ccmA; heme exporter subunit; ATP-binding component of ABC superfamily K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D SHEWBE_0793 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D SHEWBE_0792 ftsE; Cell division ABC transporter, ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SHEWBE_2428 conserved membrane protein of unknown function, might belong to ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D SHEWBE_3168 membrane protein of unknown function, might belong to transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D SHEWBE_0962 conserved membrane protein of unknown function K01992 ABC-2.P; ABC-2 type transport system permease protein
D SHEWBE_0963 conserved membrane protein of unknown function K01992 ABC-2.P; ABC-2 type transport system permease protein
D SHEWBE_1244 putative transporter subunit: membrane component of ABC superfamily YadH K01992 ABC-2.P; ABC-2 type transport system permease protein
D SHEWBE_2427 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SHEWBE_1243 putative transporter subunit: ATP-binding component of ABC superfamily yadG K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SHEWBE_3110 conserved protein of unknown function, containing conserved domain of ABC-type antimicrobial peptide transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein
D SHEWBE_3392 putative ABC transporter, permease K02004 ABC.CD.P; putative ABC transport system permease protein
D SHEWBE_4348 conserved membrane protein of unknown function K02004 ABC.CD.P; putative ABC transport system permease protein
D SHEWBE_3115 putative transporter subunit: ATP-binding component of ABC superfamily K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SHEWBE_3393 ybbA; uncharacterized transporter subunit: ATP-binding component of ABC superfamily K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SHEWBE_4347 putative transporter subunit: ATP-binding component of ABC superfamily K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SHEWBE_0466 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SHEWBE_2625 mdtK; multidrug efflux system transporter K26939 norM; MATE family, multidrug efflux pump
D SHEWBE_2311 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D SHEWBE_0747 dinF; DNA-damage-inducible protein F K26937 dinF; MATE family, multidrug efflux pump
D SHEWBE_1010 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D SHEWBE_0728 putative Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D SHEWBE_2219 MFS transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D SHEWBE_0971 putative Transporter K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter
D SHEWBE_3134 nrtP; Nitrate/nitrite transporter NrtP K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D SHEWBE_3989 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D SHEWBE_3059 Bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D SHEWBE_0811 Drug resistance transporter, Bcr/CflA family protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D SHEWBE_0106 putative Major facilitator superfamily transporter K18567 pbuE; MFS transporter, DHA1 family, purine base/nucleoside efflux pump
D SHEWBE_3454 putative Multidrug resistance protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D SHEWBE_3876 MFS transporter TsgA K06141 tsgA; MFS transporter, TsgA protein
D SHEWBE_1616 ptsP; fused PTS enzyme: PEP-protein phosphotransferase (enzyme I); GAF domain containing protein K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D SHEWBE_1070 npr; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) K08485 ptsO; phosphocarrier protein NPr
D SHEWBE_2902 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SHEWBE_1072 ptsN; sugar-specific enzyme IIA component of PTS K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D SHEWBE_1226 Ion transporter K10716 kch; voltage-gated potassium channel
D SHEWBE_4166 conserved membrane protein of unknown function K03320 amt; ammonium transporter, Amt family
D SHEWBE_3058 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_4078 putative glutathione S-transferase protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_4142 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_0116 Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_0719 gst; Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_1989 Glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SHEWBE_1160 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D SHEWBE_2203 TPR domain protein K07114 yfbK; Ca-activated chloride channel homolog
D SHEWBE_2204 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D SHEWBE_2738 Inter-alpha-trypsin inhibitor domain protein K07114 yfbK; Ca-activated chloride channel homolog
D SHEWBE_3797 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D SHEWBE_2647 yccA; conserved hypothetical protein; putative inner membrane protein K19416 yccA; modulator of FtsH protease
D SHEWBE_3376 focA; formate transporter K06212 focA; formate transporter
D SHEWBE_1138 protein of unknown function, might be Transporter K03442 mscS; small conductance mechanosensitive channel
D SHEWBE_0455 ybdG; Miniconductance mechanosensitive channel YbdG K16053 ybdG; miniconductance mechanosensitive channel
D SHEWBE_1069 Magnesium transporter MgtE K06213 mgtE; magnesium transporter
D SHEWBE_1834 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D SHEWBE_1835 putative Flagellar motor protein PomB K02557 motB; chemotaxis protein MotB
D SHEWBE_1098 Sodium-type flagellar protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D SHEWBE_2329 motY; Sodium-type flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY
D SHEWBE_2156 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D SHEWBE_2157 TonB system transport protein ExbB2 K03561 exbB; biopolymer transport protein ExbB
D SHEWBE_2158 exbD; Biopolymer transport protein exbD2 K03559 exbD; biopolymer transport protein ExbD
D SHEWBE_2333 tolQ; membrane spanning protein in TolA-TolQ-TolR complex K03562 tolQ; biopolymer transport protein TolQ
D SHEWBE_2334 tolR; Protein TolR K03560 tolR; biopolymer transport protein TolR
D SHEWBE_2271 corA; Magnesium transport protein CorA K03284 corA; magnesium transporter
D SHEWBE_2640 crcB; putative fluoride ion transporter CrcB K06199 crcB; fluoride exporter
D SHEWBE_1723 merT; Mercuric transport protein MerT K08363 merT; mercuric ion transport protein
D SHEWBE_1727 conserved membrane protein of unknown function K08363 merT; mercuric ion transport protein
D SHEWBE_1725 putative mercuric transport protein periplasmic component K08364 merP; periplasmic mercuric ion binding protein
D SHEWBE_3658 conserved membrane protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SHEWBE_1645 yfjD; conserved hypothetical protein; putative inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SHEWBE_1265 putative Outer membrane porin K14062 ompN; outer membrane protein N
D SHEWBE_0464 Outer membrane protein, putative (fragment) K16079 omp31; outer membrane immunogenic protein
D SHEWBE_0005 OmpA family protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D SHEWBE_1784 Flagellar motor protein MotB K03286 TC.OOP; OmpA-OmpF porin, OOP family
D SHEWBE_2198 putative long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D SHEWBE_0184 putative long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D SHEWBE_1326 Aromatic hydrocarbon degradation protein K06076 fadL; long-chain fatty acid transport protein
D SHEWBE_3920 ompK; Outer membrane protein OmpK K05517 tsx; nucleoside-specific channel-forming protein
D SHEWBE_0391 TonB-dependent receptor (fragment) K19611 fepA; ferric enterobactin receptor
D SHEWBE_1269 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein
D SHEWBE_2153 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_2590 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_3127 Outer membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_3374 TonB-dependent receptor, plug (fragment) K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_3874 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_4079 conserved exported protein of unknown function K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_4103 TonB-dependent receptor C-terminal domain protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_4257 Outer membrane protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_0408 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_0524 putative TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_1593 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_1882 TonB-dependent receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SHEWBE_2662 Outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system
D SHEWBE_4459 putative Outer membrane efflux family protein K15725 czcC; outer membrane protein, heavy metal efflux system
D SHEWBE_1127 tolC; transport channel K12340 tolC; outer membrane protein
D SHEWBE_0004 Agglutination protein K12543 lapE; outer membrane protein, adhesin transport system
D SHEWBE_2769 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D SHEWBE_3437 putative Capsular polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D SHEWBE_3540 Periplasmic protein involved in polysaccharide export K01991 wza; polysaccharide biosynthesis/export protein
D SHEWBE_1937 yaeT; outer membrane protein assembly factor K07277 SAM50; outer membrane protein insertion porin family
D SHEWBE_3651 bamB; Outer membrane protein assembly factor BamB K17713 bamB; outer membrane protein assembly factor BamB
D SHEWBE_2925 bamC; Outer membrane protein assembly factor BamC K07287 bamC; outer membrane protein assembly factor BamC
D SHEWBE_4067 yfiO; putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D SHEWBE_3673 bamE; Outer membrane protein assembly factor BamE K06186 bamE; outer membrane protein assembly factor BamE
D SHEWBE_2481 conserved protein of unknown function, might belong to Surface antigen (D15) K07278 tamA; translocation and assembly module TamA
D SHEWBE_2480 conserved protein of unknown function K09800 tamB; translocation and assembly module TamB
D SHEWBE_3493 protein of unknown function, Conserved repeat domain protein K21449 ata; trimeric autotransporter adhesin
D SHEWBE_1076 putative lipopolysaccharide transport protein A, LptA: periplasmic-binding component of ABC superfamily K09774 lptA; lipopolysaccharide export system protein LptA
D SHEWBE_1077 putative Lipopolysaccharide export system protein LptC K11719 lptC; lipopolysaccharide export system protein LptC
D SHEWBE_4215 lptD; LPS-assembly protein LptD K04744 lptD; LPS-assembly protein
D SHEWBE_4030 lptE; LPS-assembly lipoprotein LptE K03643 lptE; LPS-assembly lipoprotein
D SHEWBE_4022 ybeX; putative protein involved in divalent ion export K06189 corC; hemolysin (HlyC) family protein
D SHEWBE_1513 conserved membrane protein of unknown function, might belong to LrgA family protein K06518 cidA; holin-like protein
D SHEWBE_0834 fieF; zinc transporter K13283 fieF; ferrous-iron efflux pump FieF
D SHEWBE_2660 czcA; Cation efflux system protein CzcA K15726 czcA; heavy metal efflux system protein
D SHEWBE_4457 Heavy metal efflux pump, CzcA family protein K15726 czcA; heavy metal efflux system protein
D SHEWBE_0780 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D SHEWBE_3631 AcrB/AcrD/AcrF family protein K18303 mexK; multidrug efflux pump
D SHEWBE_2770 bepE; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D SHEWBE_2923 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D SHEWBE_0722 acrB; multidrug efflux system protein,AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D SHEWBE_1796 bepG; Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D SHEWBE_0195 rarD; putative chloramphenicol resistance permease K05786 rarD; chloramphenicol-sensitive protein RarD
D SHEWBE_2326 conserved membrane protein of unknown function K07084 yuiF; putative amino acid transporter
D SHEWBE_2094 Permease, GntP family protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D SHEWBE_3105 dcuA; C4-dicarboxylate antiporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D SHEWBE_2076 Glycine betaine transporter K02168 betT; choline/glycine/proline betaine transport protein
D SHEWBE_0228 caxA; putative antiporter CaxA K07301 yrbG; cation:H+ antiporter
D SHEWBE_1080 yrbG; putative calcium/sodium:proton antiporter K07301 yrbG; cation:H+ antiporter
D SHEWBE_2199 putP; proline:sodium symporter K11928 putP; sodium/proline symporter
D SHEWBE_3300 Sodium/solute symporter family protein K14393 actP; cation/acetate symporter
D SHEWBE_3443 sstT; sodium:serine/threonine symporter K07862 sstT; serine/threonine transporter
D SHEWBE_0406 gltS; Sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D SHEWBE_1619 nhaA; sodium-proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D SHEWBE_2472 nhaB; sodium:proton antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family
D SHEWBE_1971 conserved membrane protein of unknown function K18218 tet35; tetracycline resistance efflux pump
D SHEWBE_1949 putative Glutathione-regulated potassium-efflux system protein KefB K03455 KEA1_2_3; K+:H+ antiporter
D SHEWBE_0600 trkH; potassium transporter K03498 trkH; trk/ktr system potassium uptake protein
D SHEWBE_0621 Trk system potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D SHEWBE_0622 trkA; NAD-binding component of TrK potassium transporter K03499 trkA; trk/ktr system potassium uptake protein
D SHEWBE_3278 xanQ; Xanthine permease XanQ K16346 xanQ; xanthine permease XanQ
D SHEWBE_3727 ygfQ; putative transporter K06901 pbuG; adenine/guanine/hypoxanthine permease
D SHEWBE_3956 yieG; conserved hypothetical protein; putative inner membrane protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D SHEWBE_4326 putative Tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D SHEWBE_0774 mtr; tryptophan transporter of high affinity K03835 mtr; tryptophan-specific transport protein
D SHEWBE_1440 sdaC; putative serine transporter K03837 sdaC; serine transporter
D SHEWBE_1585 Chloride channel K03281 clcA; chloride channel protein, CIC family
D SHEWBE_3033 ybaR; putative sulfate transporter YbaR K03321 TC.SULP; sulfate permease, SulP family
D SHEWBE_3799 putative transporter (fragment) K03321 TC.SULP; sulfate permease, SulP family
D SHEWBE_1824 Putative sulfate transporter YbaR (fragment) K03321 TC.SULP; sulfate permease, SulP family
D SHEWBE_3529 putative Colanic acid exporter K16695 wzxC; lipopolysaccharide exporter
D SHEWBE_1694 murJ; putative lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D SHEWBE_3846 putative Transporter K13936 mdcF; malonate transporter and related proteins
D SHEWBE_2930 yggA; putative amino-acid transporter YggA K06895 lysE; L-lysine exporter family protein LysE/ArgO
D SHEWBE_3087 Transporter, LysE family protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D SHEWBE_0454 Transporter, LysE family protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D SHEWBE_2285 putative Threonine efflux protein K05835 rhtC; threonine efflux protein
D SHEWBE_1343 Transporter, LysE family K05835 rhtC; threonine efflux protein
D SHEWBE_2933 perM; putative permease K03548 perM; putative permease
D SHEWBE_0709 yhhQ; conserved hypothetical protein; putative inner membrane protein K09125 yhhQ; queuosine precursor transporter
D SHEWBE_0172 ftsW; integral membrane protein involved in stabilizing FstZ ring during cell division K03588 ftsW; cell division protein FtsW
D SHEWBE_4327 mneA; putative manganese exporter K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D SHEWBE_2159 Protein TonB K03832 tonB; periplasmic protein TonB
D SHEWBE_2337 pal; peptidoglycan-associated outer membrane lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D SHEWBE_2335 TolA protein K03646 tolA; colicin import membrane protein
D SHEWBE_2336 tolB; periplasmic protein K03641 tolB; TolB protein
D SHEWBE_3815 oadB; Oxaloacetate decarboxylase beta chain 2 K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D SHEWBE_3816 oadA; Oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D SHEWBE_3817 putative oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D SHEWBE_4094 putative Suppressor for copper-sensitivity B K08344 scsB; suppressor for copper-sensitivity B
D SHEWBE_3880 torD; Chaperone protein TorD K03533 torD; TorA specific chaperone
D SHEWBE_2661 conserved exported protein of unknown function, might belong to Cobalt-zinc-cadmium resistance protein (Cation efflux system protein) K15727 czcB; membrane fusion protein, heavy metal efflux system
D SHEWBE_4458 putative Cation efflux protein K15727 czcB; membrane fusion protein, heavy metal efflux system
D SHEWBE_0782 putative Heavy metal efflux protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D SHEWBE_0003 HlyD family secretion protein K12542 lapC; membrane fusion protein, adhesin transport system
D SHEWBE_2771 putative acriflavine resistance protein E K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_2924 HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_0721 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_1795 Efflux transporter, MFP subunit, AcrA/E family protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_1466 conserved protein of unknown function K07799 mdtA; membrane fusion protein, multidrug efflux system
D SHEWBE_3436 conserved protein of unknown function K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D SHEWBE_3125 putative Transporter K03811 pnuC; nicotinamide mononucleotide transporter
D SHEWBE_2103 Ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D SHEWBE_2104 feoB; fused ferrous iron transporter, protein B: GTP-binding protein; membrane protein K04759 feoB; ferrous iron transport protein B
D SHEWBE_0087 ccmF; Cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D SHEWBE_0285 ccmF; heme lyase, CcmF subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D SHEWBE_2532 putative copper export protein K07245 pcoD; copper resistance protein D
D SHEWBE_2531 putative copper resistance (CopC-like) protein K07156 copC; copper resistance protein C
D SHEWBE_4199 conserved protein of unknown function K07274 mipA; MipA family protein
D SHEWBE_4297 conserved protein of unknown function, might belong to MltA-interacting MipA family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:sbk02044]
D SHEWBE_1127 tolC; transport channel K12340 tolC; outer membrane protein
D SHEWBE_0002 Toxin secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SHEWBE_0003 HlyD family secretion protein K12542 lapC; membrane fusion protein, adhesin transport system
D SHEWBE_0004 Agglutination protein K12543 lapE; outer membrane protein, adhesin transport system
D SHEWBE_3260 General secretion pathway protein A (fragment) K02450 gspA; general secretion pathway protein A
D SHEWBE_1580 exeA; General secretion pathway protein A K02450 gspA; general secretion pathway protein A
D SHEWBE_1581 General secretion pathway protein B K02451 gspB; general secretion pathway protein B
D SHEWBE_0378 exeC; Type II secretion system protein C K02452 gspC; general secretion pathway protein C
D SHEWBE_0377 gspD; general secretory pathway component, cryptic K02453 gspD; general secretion pathway protein D
D SHEWBE_0376 gspE; general secretory pathway component, cryptic K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D SHEWBE_0375 gspF; general secretory pathway component, cryptic K02455 gspF; general secretion pathway protein F
D SHEWBE_0373 gspG; pseudopilin, cryptic, general secretion pathway K02456 gspG; general secretion pathway protein G
D SHEWBE_0371 General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D SHEWBE_0370 General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D SHEWBE_0369 gspJ; Type II secretion system protein GspJ K02459 gspJ; general secretion pathway protein J
D SHEWBE_0368 exeK; Type II secretion system protein K K02460 gspK; general secretion pathway protein K
D SHEWBE_0367 exeL; Type II secretion system protein L K02461 gspL; general secretion pathway protein L
D SHEWBE_0366 Type II secretion system protein M K02462 gspM; general secretion pathway protein M
D SHEWBE_0365 General secretion pathway protein N K02463 gspN; general secretion pathway protein N
D SHEWBE_0901 tapD; Type 4 prepilin-like proteins leader peptide-processing enzyme [Includes: Leader peptidase; N-methyltransferase] K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D SHEWBE_0904 Methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA
D SHEWBE_0903 pilB; Type IV pilus biogenesis protein PilB K02652 pilB; type IV pilus assembly protein PilB
D SHEWBE_0902 pilC; Type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC
D SHEWBE_1704 Prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE
D SHEWBE_3656 Type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D SHEWBE_0872 pilM; Type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D SHEWBE_0873 Type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D SHEWBE_0874 Type IV pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D SHEWBE_0875 Type IV pilus biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP
D SHEWBE_0876 Type IV pilus biogenesis protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D SHEWBE_1775 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D SHEWBE_1776 pilU; twitching motility protein K02670 pilU; twitching motility protein PilU
D SHEWBE_1700 Type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D SHEWBE_1701 Prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW
D SHEWBE_1702 Type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX
D SHEWBE_1703 putative Type IV pilin biogenesis protein K02674 pilY1; type IV pilus assembly protein PilY1
D SHEWBE_3043 Type IV pilus biogenesis protein pilZ K02676 pilZ; type IV pilus assembly protein PilZ
D SHEWBE_1706 putative Type IV pilus biogenesis protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D SHEWBE_1707 Prepilin-type N-terminal cleavage/methylation domain-containing protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D SHEWBE_2237 FimV N-terminal domain K08086 fimV; pilus assembly protein FimV
D SHEWBE_2858 conserved membrane protein of unknown function,might belong to Peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D SHEWBE_2856 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D SHEWBE_2854 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC
D SHEWBE_2849 Flp pilus assembly protein, ATPase CpaE K02282 cpaE; pilus assembly protein CpaE
D SHEWBE_2848 putative pilus assembly protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D SHEWBE_2847 conserved membrane protein of unknown function,might belong to Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D SHEWBE_2846 conserved membrane protein of unknown function,might belong to Type II secretion system protein K12511 tadC; tight adherence protein C
D SHEWBE_2859 Flp/Fap pilin component superfamily K02651 flp; pilus assembly protein Flp/PilA
D SHEWBE_0944 Prepilin-type N-terminal cleavage/methylation domain-containing protein K10924 mshA; MSHA pilin protein MshA
D SHEWBE_0945 MSHA pilin protein MshA K10924 mshA; MSHA pilin protein MshA
D SHEWBE_0943 Prepilin-type N-terminal cleavage/methylation domain-containing protein K10925 mshB; MSHA pilin protein MshB
D SHEWBE_1345 Prepilin-type N-terminal cleavage/methylation domain-containing protein K10925 mshB; MSHA pilin protein MshB
D SHEWBE_0946 MSHA pilin protein MshC K10926 mshC; MSHA pilin protein MshC
D SHEWBE_0947 mshD; MSHA pilin protein MshD K10927 mshD; MSHA pilin protein MshD
D SHEWBE_0939 hxcR; putative type II secretion system protein HxcR K12276 mshE; MSHA biogenesis protein MshE
D SHEWBE_0940 MSHA biogenesis protein MshG K12278 mshG; MSHA biogenesis protein MshG
D SHEWBE_0932 conserved protein of unknown function K12279 mshI; MSHA biogenesis protein MshI
D SHEWBE_0934 MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ
D SHEWBE_0935 MSHA biogenesis protein MshK K12281 mshK; MSHA biogenesis protein MshK
D SHEWBE_0936 MSHA biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL
D SHEWBE_0937 MSHA biogenesis protein MshM K12283 mshM; MSHA biogenesis protein MshM
D SHEWBE_0938 putative MSHA biogenesis protein MshN K12284 mshN; MSHA biogenesis protein MshN
D SHEWBE_0948 MSHA biogenesis protein MshO K12285 mshO; MSHA biogenesis protein MshO
D SHEWBE_0949 MSHA biogenesis protein MshP K12286 mshP; MSHA biogenesis protein MshP
D SHEWBE_0950 protein of unknown function K12287 mshQ; MSHA biogenesis protein MshQ
D SHEWBE_1772 yggT; conserved hypothetical protein; putative inner membrane protein K02221 yggT; YggT family protein
D SHEWBE_2140 putative DNA-binding protein K02237 comEA; competence protein ComEA
D SHEWBE_1334 Uncharacterized deaminase in luxG 3'region K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D SHEWBE_3202 conserved membrane protein of unknown function, containing DNA internalization-related competence protein ComEC/Rec2 domain K02238 comEC; competence protein ComEC
D SHEWBE_3567 flhA; component of the flagellar export machinery FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D SHEWBE_3569 flhB; component of the flagellar export machinery FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D SHEWBE_3583 putative flagellar basal-body MS-ring and collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D SHEWBE_3581 putative flagellar biosynthesis chaperone FliH K02411 fliH; flagellar assembly protein FliH
D SHEWBE_3580 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D SHEWBE_3575 fliN; flagellar motor switching and energizing component FliN K02417 fliN; flagellar motor switch protein FliN
D SHEWBE_3573 putative flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D SHEWBE_3572 fliP; component of the flagellar export machinery FliP K02419 fliP; flagellar biosynthesis protein FliP
D SHEWBE_3571 putative component of the flagellar export machinery FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D SHEWBE_3570 fliR; component of the flagellar export machinery FliR K02421 fliR; flagellar biosynthesis protein FliR
D SHEWBE_1472 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D SHEWBE_4406 Curlin associated repeat-containing protein K04335 csgB; minor curlin subunit
D SHEWBE_4411 Curli assembly protein CsgE K04337 csgE; curli production assembly/transport component CsgE
D SHEWBE_4410 putative Curli production assembly/transport component CsgF K04338 csgF; curli production assembly/transport component CsgF
D SHEWBE_4409 csgG; putative outer membrane lipoprotein involved in curli production assembly/transport K06214 csgG; curli production assembly/transport component CsgG
D SHEWBE_0163 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SHEWBE_0495 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D SHEWBE_3420 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D SHEWBE_0337 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D SHEWBE_3419 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D SHEWBE_3934 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D SHEWBE_0303 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D SHEWBE_1647 ffh; 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SHEWBE_0791 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D SHEWBE_3421 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D SHEWBE_0572 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SHEWBE_4485 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D SHEWBE_4486 tatB; TatABCE protein translocation system subunit K03117 tatB; sec-independent protein translocase protein TatB
D SHEWBE_4487 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:sbk02042]
D SHEWBE_3658 conserved membrane protein of unknown function K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SHEWBE_1645 yfjD; conserved hypothetical protein; putative inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SHEWBE_2564 yqfA; putative hemolysin, inner membrane subunit K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:sbk02022]
D SHEWBE_1860 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D SHEWBE_1859 phoB; positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D SHEWBE_2276 Sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_1871 Sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_2277 phoP; Transcriptional regulatory protein PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SHEWBE_1872 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SHEWBE_0735 envZ; sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D SHEWBE_0736 ompR; two-component response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D SHEWBE_1752 DNA-binding response regulator (fragment) K07661 rstA; two-component system, OmpR family, response regulator RstA
D SHEWBE_0831 Sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D SHEWBE_2803 cpxR; Transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D SHEWBE_0832 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D SHEWBE_3886 torR; DNA-binding response regulator in two-component regulatory system with TorS K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D SHEWBE_1285 arcA; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D SHEWBE_4202 putative Sensor protein RstB K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D SHEWBE_4201 rstA; DNA-binding response regulator in two-component regulatory system with RstB K02483 K02483; two-component system, OmpR family, response regulator
D SHEWBE_0411 cusR; Transcriptional regulatory protein CusR K02483 K02483; two-component system, OmpR family, response regulator
D SHEWBE_1171 phoP; Transcriptional regulatory protein PhoP K02483 K02483; two-component system, OmpR family, response regulator
D SHEWBE_1530 Histidine kinase K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D SHEWBE_1529 narP; DNA-binding response regulator in two-component regulatory system with NarQ or NarX K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D SHEWBE_3844 barA; hybrid sensory histidine kinase, in two-component regulatory system with UvrY K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D SHEWBE_2420 uvrY; DNA-binding response regulator in two-component regulatory system with BarA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D SHEWBE_0264 glnL; sensory histidine kinase in two-component regulatory system with GlnG K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D SHEWBE_0265 glnG; response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D SHEWBE_0708 Sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D SHEWBE_3561 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_0753 cheA; CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_3563 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SHEWBE_0754 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SHEWBE_3560 cheB; Chemotaxis response regulator protein-glutamate methylesterase 1 K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SHEWBE_0749 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SHEWBE_3075 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_3444 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_3606 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_2766 Histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D SHEWBE_2767 Two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D SHEWBE_3586 putative Flagellar sensor histidine kinase fleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D SHEWBE_3585 putative flagellar regulatory protein C FlrC K10943 flrC; two-component system, response regulator FlrC
D SHEWBE_3137 response regulator NasT K22010 pdtaR; two-component system, response regulator PdtaR
D SHEWBE_2674 conserved protein of unknown function, might belong to Signal transduction histidine-protein kinase BarA K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D SHEWBE_1002 Sensory box histidine kinase/response regulator K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:sbk02035]
D SHEWBE_3561 Chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_0753 cheA; CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SHEWBE_3556 CheW; Purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SHEWBE_3557 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D SHEWBE_0752 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D SHEWBE_0983 cheD; putative chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D SHEWBE_3605 cheR; Chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SHEWBE_0750 cheR; chemotaxis regulator, protein-glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SHEWBE_3560 cheB; Chemotaxis response regulator protein-glutamate methylesterase 1 K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SHEWBE_0749 cheB; fused chemotaxis regulator; protein-glutamate methylesterase in two-component regulatory system with CheA K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SHEWBE_3563 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SHEWBE_0754 cheY; chemotaxis regulator transmitting signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SHEWBE_3562 cheZ; Protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D SHEWBE_3075 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_3444 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_3606 Chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SHEWBE_3632 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_2245 Methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_2441 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_3227 putative chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_3269 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_3323 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4024 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4181 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4221 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_4256 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0422 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0482 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0487 Methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0549 conserved protein of unknown function K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_0751 protein of unknown function,might be Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1033 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1048 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1212 Methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1331 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1433 putative Chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_1956 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SHEWBE_2547 Methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D SHEWBE_1026 Chemotaxis protein K03776 aer; aerotaxis receptor
D SHEWBE_1716 Chemotaxis protein K03776 aer; aerotaxis receptor
D SHEWBE_3581 putative flagellar biosynthesis chaperone FliH K02411 fliH; flagellar assembly protein FliH
D SHEWBE_3580 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D SHEWBE_3579 putative flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D SHEWBE_3573 putative flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D SHEWBE_3572 fliP; component of the flagellar export machinery FliP K02419 fliP; flagellar biosynthesis protein FliP
D SHEWBE_3571 putative component of the flagellar export machinery FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D SHEWBE_3570 fliR; component of the flagellar export machinery FliR K02421 fliR; flagellar biosynthesis protein FliR
D SHEWBE_3567 flhA; component of the flagellar export machinery FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D SHEWBE_3569 flhB; component of the flagellar export machinery FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D SHEWBE_3582 fliG; flagellar motor switching and energizing component FliG K02410 fliG; flagellar motor switch protein FliG
D SHEWBE_3576 fliM; flagellar motor switching and energizing component FliM K02416 fliM; flagellar motor switch protein FliM
D SHEWBE_3575 fliN; flagellar motor switching and energizing component FliN K02417 fliN; flagellar motor switch protein FliN
D SHEWBE_3583 putative flagellar basal-body MS-ring and collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D SHEWBE_3597 flgI; flagellar basal body P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D SHEWBE_3607 putative Flagellar basal-body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D SHEWBE_3598 flgH; putative flagellar protein of basal-body outer-membrane L ring FlgH K02393 flgH; flagellar L-ring protein FlgH
D SHEWBE_3577 putative flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D SHEWBE_0447 putative Flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D SHEWBE_3584 fliE; Flagellar basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D SHEWBE_3578 putative Flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D SHEWBE_3604 flgB; flagellar component of cell-proximal portion of basal-body rod FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D SHEWBE_3603 flgC; flagellar component of cell-proximal portion of basal-body rod FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D SHEWBE_3602 putative flagellar hook assembly cap protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D SHEWBE_3600 flgF; flagellar component of cell-proximal portion of basal-body rod FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D SHEWBE_3599 flgG; flagellar component of cell-distal portion of basal-body rod FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D SHEWBE_3596 flgJ; Flagellar rod assembly protein/Peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D SHEWBE_3601 putative Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D SHEWBE_3595 putative flagellar hook-filament junction protein 1 FlgK K02396 flgK; flagellar hook-associated protein 1
D SHEWBE_3594 putative flagellar hook-associated protein 3 FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D SHEWBE_3609 conserved protein of unknown function, containing the flagellar assembly protein FlgN-domain K02399 flgN; flagellar biosynthesis protein FlgN
D SHEWBE_3610 conserved protein of unknown function K09860 flgP; outer membrane protein FlgP
D SHEWBE_1098 Sodium-type flagellar protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D SHEWBE_2329 motY; Sodium-type flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY
D SHEWBE_3592 fliC; Flagellin FliC K02406 fliC; flagellin
D SHEWBE_3593 fliC; Flagellin FliC K02406 fliC; flagellin
D SHEWBE_3590 putative flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D SHEWBE_3588 fliS; Flagellin chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D SHEWBE_3564 fliA; RNA polymerase, sigma 28 (sigma F) factor FliA K02405 fliA; RNA polymerase sigma factor FliA
D SHEWBE_1834 pomA; flagellar motor protein PomA K02556 motA; chemotaxis protein MotA
D SHEWBE_1835 putative Flagellar motor protein PomB K02557 motB; chemotaxis protein MotB
D SHEWBE_3587 putative DNA-binding response regulator in two-component system K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D SHEWBE_3586 putative Flagellar sensor histidine kinase fleS K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D SHEWBE_3585 putative flagellar regulatory protein C FlrC K10943 flrC; two-component system, response regulator FlrC
D SHEWBE_3608 putative Negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D SHEWBE_3591 putative flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D SHEWBE_3566 putative Flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D SHEWBE_3565 putative flagellar biosynthetic protein FlhG K04562 flhG; flagellar biosynthesis protein FlhG
D SHEWBE_1775 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D SHEWBE_1776 pilU; twitching motility protein K02670 pilU; twitching motility protein PilU
D SHEWBE_0904 Methylation site containing protein K02650 pilA; type IV pilus assembly protein PilA
D SHEWBE_0903 pilB; Type IV pilus biogenesis protein PilB K02652 pilB; type IV pilus assembly protein PilB
D SHEWBE_0902 pilC; Type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC
D SHEWBE_0901 tapD; Type 4 prepilin-like proteins leader peptide-processing enzyme [Includes: Leader peptidase; N-methyltransferase] K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D SHEWBE_3656 Type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D SHEWBE_0876 Type IV pilus biogenesis protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D SHEWBE_0875 Type IV pilus biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP
D SHEWBE_0874 Type IV pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D SHEWBE_0873 Type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D SHEWBE_0872 pilM; Type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D SHEWBE_3043 Type IV pilus biogenesis protein pilZ K02676 pilZ; type IV pilus assembly protein PilZ
D SHEWBE_1700 Type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D SHEWBE_1701 Prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW
D SHEWBE_1702 Type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX
D SHEWBE_1703 putative Type IV pilin biogenesis protein K02674 pilY1; type IV pilus assembly protein PilY1
D SHEWBE_1704 Prepilin-type N-terminal cleavage/methylation domain-containing protein K02655 pilE; type IV pilus assembly protein PilE
D SHEWBE_2859 Flp/Fap pilin component superfamily K02651 flp; pilus assembly protein Flp/PilA
D SHEWBE_2858 conserved membrane protein of unknown function,might belong to Peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D SHEWBE_2856 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D SHEWBE_2854 Flp pilus assembly protein, secretin CpaC K02280 cpaC; pilus assembly protein CpaC
D SHEWBE_2849 Flp pilus assembly protein, ATPase CpaE K02282 cpaE; pilus assembly protein CpaE
D SHEWBE_2848 putative pilus assembly protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:sbk04812]
D SHEWBE_4184 MEMO1 family protein SVI_0827 K06990 MEMO1; MEMO1 family protein
D SHEWBE_0951 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D SHEWBE_0167 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D SHEWBE_0168 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D SHEWBE_2467 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC
D SHEWBE_2466 minD; cell division inhibitor, a membrane ATPase,activates minC K03609 minD; septum site-determining protein MinD
D SHEWBE_2465 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D SHEWBE_3412 conserved protein of unknown function K03496 parA; chromosome partitioning protein
D SHEWBE_3558 ParA family protein K03496 parA; chromosome partitioning protein
D SHEWBE_3665 Plasmid segregation oscillating ATPase ParF K03496 parA; chromosome partitioning protein
D SHEWBE_0537 conserved protein of unknown function K03496 parA; chromosome partitioning protein
D SHEWBE_0536 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:sbk04147]
D SHEWBE_3225 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D SHEWBE_3839 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SHEWBE_2697 gap; Glyceraldehyde-3-phosphate dehydrogenase-like protein K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SHEWBE_2699 cbbGC; Glyceraldehyde-3-phosphate dehydrogenase, chromosomal K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SHEWBE_1453 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SHEWBE_2615 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SHEWBE_3987 cyp; Peptidyl-prolyl cis-trans isomerase cyp18 K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SHEWBE_1510 Peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SHEWBE_2327 Alkyl hydroperoxide reductase C K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D SHEWBE_1012 groEL; chaperone Hsp60, peptide-dependent ATPase, heat shock protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SHEWBE_3947 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D SHEWBE_1674 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SHEWBE_1284 dap; Dipeptidyl aminopeptidase 4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D SHEWBE_3641 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D SHEWBE_0325 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D SHEWBE_0338 tufB; protein chain elongation factor EF-Tu, possible GTP-binding factor (duplicate of tufA) K02358 tuf; elongation factor Tu
D SHEWBE_3129 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D SHEWBE_2463 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_3266 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0227 AMP-binding protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_0474 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_1341 fadD; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SHEWBE_2028 atoB; Acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SHEWBE_2612 Zinc-dependent metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D SHEWBE_3223 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D SHEWBE_3231 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D SHEWBE_0869 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D SHEWBE_3748 hyuA; D-stereospecific phenylhydantoinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D SHEWBE_1283 fbp; Fructose-1,6-bisphosphatase class 1 K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D SHEWBE_4398 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D SHEWBE_1800 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D SHEWBE_0182 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D SHEWBE_0261 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SHEWBE_4491 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D SHEWBE_3086 melA; Protein MelA K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D SHEWBE_3460 putative pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D SHEWBE_4362 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_0062 Alkaline phosphatase (fragment) K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_1591 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_0050 purH; bifunctional protein [Includes: phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SHEWBE_0912 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SHEWBE_1970 etfA; electron transfer flavoprotein alpha-subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D SHEWBE_2617 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SHEWBE_3935 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:sbk02048]
D SHEWBE_3714 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D SHEWBE_3713 conserved protein of unknown function K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D SHEWBE_3710 putative CRISPR-associated endonuclease Cas6/Csy4 K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D SHEWBE_0880 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SHEWBE_0462 Site-specific DNA-methyltransferase (adenine-specific) K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D SHEWBE_3010 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SHEWBE_4322 yoeB; toxin of the YoeB-YefM toxin-antitoxin system K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D SHEWBE_4323 yefM; antitoxin of the YoeB-YefM toxin-antitoxin system K19159 yefM; antitoxin YefM
D SHEWBE_3685 conserved protein of unknown function, might belong to Phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SHEWBE_3724 conserved protein of unknown function, might belong to Phosphatidylinositol kinase K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SHEWBE_2051 conserved protein of unknown function K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SHEWBE_0387 yafO; putative toxin of the YafO-YafN toxin-antitoxin system K19160 yafO; mRNA interferase YafO [EC:3.1.-.-]
D SHEWBE_0386 yafN; putative antitoxin of the YafO-YafN toxin-antitoxin system K19161 yafN; antitoxin YafN
D SHEWBE_2135 Phage shock protein C (PspC) family protein K03973 pspC; phage shock protein C
D SHEWBE_2134 pspB; DNA-binding transcriptional regulator of psp operon K03970 pspB; phage shock protein B
D SHEWBE_0167 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D SHEWBE_0951 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D SHEWBE_1134 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SHEWBE_1132 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SHEWBE_3451 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SHEWBE_1623 conserved membrane protein of unknown function K19168 cptA; toxin CptA
D SHEWBE_1622 ygfY; conserved hypothetical protein K09159 cptB; antitoxin CptB
D SHEWBE_3405 iscS; cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SHEWBE_4452 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:sbk04090]
D SHEWBE_1284 dap; Dipeptidyl aminopeptidase 4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D SHEWBE_2612 Zinc-dependent metallopeptidase K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
C 01504 Antimicrobial resistance genes [BR:sbk01504]
D SHEWBE_0404 Aminoglycoside phosphotransferase K17880 hyg; hygromycin-B 7''-O-kinase [EC:2.7.1.119]
D SHEWBE_1971 conserved membrane protein of unknown function K18218 tet35; tetracycline resistance efflux pump
D SHEWBE_4352 quninolone resistance protein Qnr K18555 qnr; fluoroquinolone resistance protein
D SHEWBE_1009 conserved protein of unknown function K18555 qnr; fluoroquinolone resistance protein
D SHEWBE_2276 Sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_1871 Sensor histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SHEWBE_2277 phoP; Transcriptional regulatory protein PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SHEWBE_1872 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SHEWBE_2771 putative acriflavine resistance protein E K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_2924 HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_0721 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_1795 Efflux transporter, MFP subunit, AcrA/E family protein K03585 acrA; membrane fusion protein, multidrug efflux system
D SHEWBE_2770 bepE; Efflux pump membrane transporter BepE K18138 acrB; multidrug efflux pump
D SHEWBE_2923 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D SHEWBE_0722 acrB; multidrug efflux system protein,AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump
D SHEWBE_1796 bepG; Efflux pump membrane transporter BepG K18138 acrB; multidrug efflux pump
D SHEWBE_2769 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D SHEWBE_3629 Transcriptional regulator, TetR family protein K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D SHEWBE_3631 AcrB/AcrD/AcrF family protein K18303 mexK; multidrug efflux pump
D SHEWBE_2037 hmrR; HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SHEWBE_1127 tolC; transport channel K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:sbk00537]
D SHEWBE_4362 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_0062 Alkaline phosphatase (fragment) K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SHEWBE_1591 phoB; Alkaline phosphatase 3 K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:sbk03100]
D SHEWBE_TRNA65 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA72 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA12 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA29 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA6 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SHEWBE_TRNA26 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA78 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA4 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA80 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA81 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA82 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA84 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA85 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA83 Pseudo tRNA K14219 tRNA-Arg; tRNA Arg
D SHEWBE_TRNA49 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA50 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA51 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA52 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA53 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SHEWBE_TRNA11 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SHEWBE_TRNA14 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SHEWBE_TRNA48 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SHEWBE_TRNA45 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SHEWBE_TRNA62 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SHEWBE_TRNA94 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SHEWBE_TRNA90 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SHEWBE_TRNA93 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SHEWBE_TRNA66 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA67 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA68 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA69 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA70 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA71 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SHEWBE_TRNA16 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA8 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA17 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA18 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA44 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA63 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SHEWBE_TRNA27 tRNA-His K14226 tRNA-His; tRNA His
D SHEWBE_TRNA3 tRNA-His K14226 tRNA-His; tRNA His
D SHEWBE_TRNA13 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SHEWBE_TRNA28 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SHEWBE_TRNA7 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SHEWBE_TRNA89 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA91 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA95 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA46 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA61 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA88 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA99 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA19 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SHEWBE_TRNA31 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA32 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA33 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA34 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA35 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA36 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SHEWBE_TRNA20 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA38 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA39 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA40 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA41 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA42 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA58 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA60 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA87 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA92 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA96 tRNA-Met K14230 tRNA-Met; tRNA Met
D SHEWBE_TRNA22 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SHEWBE_TRNA24 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SHEWBE_TRNA98 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SHEWBE_TRNA30 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SHEWBE_TRNA1 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SHEWBE_TRNA2 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SHEWBE_TRNA25 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SHEWBE_TRNA86 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA43 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA5 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA79 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA64 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SHEWBE_TRNA10 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SHEWBE_TRNA15 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SHEWBE_TRNA21 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SHEWBE_TRNA23 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SHEWBE_TRNA97 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D SHEWBE_TRNA54 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SHEWBE_TRNA55 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SHEWBE_TRNA56 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SHEWBE_TRNA9 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SHEWBE_TRNA73 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA57 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA74 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA75 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA76 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA77 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_TRNA59 tRNA-Val K14237 tRNA-Val; tRNA Val
D SHEWBE_RRNA12 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA3 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA6 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA13 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA16 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA23 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA26 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA29 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA34 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA19 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA9 ribosomal RNA 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SHEWBE_RRNA11 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA2 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA5 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA8 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA14 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA20 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA24 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA27 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA30 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA33 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA17 ribosomal RNA 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SHEWBE_RRNA15 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA7 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA21 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA25 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA28 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA31 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA32 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA10 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA22 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA4 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA1 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_RRNA18 ribosomal RNA 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SHEWBE_MISCRNA15 Bacteria_small_SRP K01983 ffs; SRP RNA
D SHEWBE_MISCRNA7 RNaseP_bact_a K01978 rnpB; M1 RNA
D SHEWBE_TMRNA1 SHEWBE_TMRNA1 K15035 ssrA; transfer-messenger RNA
D SHEWBE_MISCRNA6 Spot_42 K18527 spf; small regulatory RNA Spot 42
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D SHEWBE_2084 oleD; 2-alkyl-3-oxoalkanoate reductase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D SHEWBE_2727 conserved protein of unknown function, might belong to Dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D SHEWBE_1396 calB; putative coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D SHEWBE_0970 gap; Glyceraldehyde-3-phosphate dehydrogenase 3 K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107]
D SHEWBE_3737 xdhC; xanthine dehydrogenase, Fe-S binding subunit K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D SHEWBE_0296 ndhS; Nicotinate dehydrogenase small FeS subunit K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D SHEWBE_2796 fadH; 2,4-dienoyl-CoA reductase, NADH and FMN-linked K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D SHEWBE_3268 fadH; 2,4-dienoyl-CoA reductase, NADH and FMN-linked K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D SHEWBE_4245 NAD/NADP octopine/nopaline dehydrogenase K04940 odh; opine dehydrogenase [EC:1.5.1.28]
D SHEWBE_0420 Electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D SHEWBE_1299 ahpF; alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D SHEWBE_2816 msrA; Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D SHEWBE_3034 msrA; Peptide methionine sulfoxide reductase MsrA K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D SHEWBE_4147 yghU; S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D SHEWBE_3068 yqjG; S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D SHEWBE_2539 yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D SHEWBE_1340 Hydrolase, alpha/beta fold family (modular protein) K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10]
D SHEWBE_2928 bcp; thiol peroxidase, thioredoxin-dependent K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D SHEWBE_4290 Antioxidant, AhpC/Tsa family protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D SHEWBE_1298 ahpC; alkyl hydroperoxide reductase, C22 subunit K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D SHEWBE_4151 putative Melanin biosynthesis protein TyrA K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D SHEWBE_4261 Pirin domain protein (fragment) K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D SHEWBE_1556 protein of unknown function K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D SHEWBE_1421 hmp; fused nitric oxide dioxygenase; dihydropteridine reductase 2 K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D SHEWBE_0400 ftn; ferritin iron storage protein (cytoplasmic) K02217 ftnA; ferritin [EC:1.16.3.2]
D SHEWBE_4155 fpr; Flavodoxin/ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D SHEWBE_4440 norW; NADH:flavorubredoxin oxidoreductase K12265 norW; nitric oxide reductase FlRd-NAD(+) reductase [EC:1.18.1.-]
D SHEWBE_2936 yfgD; putative oxidoreductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D SHEWBE_2188 nrdG; anaerobic ribonucleotide reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D SHEWBE_3378 pflA; pyruvate formate lyase activating enzyme 1 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D SHEWBE_4180 conserved protein of unknown function, might belong to Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D SHEWBE_4183 conserved protein of unknown function, might belong to SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D SHEWBE_1655 Iron-sulfur cluster-binding protein K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D SHEWBE_3833 pcm; L-isoaspartate protein carboxylmethyltransferase type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D SHEWBE_0105 Tellurite resistance protein TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D SHEWBE_0429 Coproporphyrinogen III oxidase K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D SHEWBE_1745 Coproporphyrinogen dehydrogenase K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D SHEWBE_4073 nodL; Nodulation protein L K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D SHEWBE_2000 putative enzyme, Hexapeptide-repeat containing-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D SHEWBE_4023 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D SHEWBE_1438 Transcriptional regulator, MarR family protein K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D SHEWBE_3661 Acetyltransferase, GNAT family protein K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D SHEWBE_2378 aat; leucyl/phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D SHEWBE_2533 Transglutaminase family protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D SHEWBE_2377 bpt; Aspartate/glutamate leucyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D SHEWBE_2081 3-oxoacyl-(Acyl carrier protein) synthase K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D SHEWBE_0813 conserved protein of unknown function K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D SHEWBE_2563 conserved protein of unknown function,DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D SHEWBE_2773 yfiP; conserved hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D SHEWBE_4312 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D SHEWBE_2765 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SHEWBE_2874 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SHEWBE_3969 apbE; FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SHEWBE_0426 Carbohydrate kinase, PfkB family protein K18478 yihV; sulfofructose kinase [EC:2.7.1.184]
D SHEWBE_2357 ydiA; conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D SHEWBE_1234 glnE; fused deadenylyltransferase; adenylyltransferase for glutamine synthetase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D SHEWBE_2228 RNA-directed DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D SHEWBE_3303 RNA-directed DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D SHEWBE_4259 conserved protein of unknown function K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D SHEWBE_4391 putative Serine/threonine protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1]
D SHEWBE_2332 ybgC; acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SHEWBE_0240 conserved protein of unknown function K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SHEWBE_0472 putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SHEWBE_0473 conserved protein of unknown function K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SHEWBE_1735 conserved protein of unknown function K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SHEWBE_3247 yciV; conserved hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D SHEWBE_2215 sixA; Phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D SHEWBE_0711 conserved protein of unknown function, containig HD domain related to phosphohydrolase activity K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D SHEWBE_3042 ycfH; putative metallodependent hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D SHEWBE_3922 Hydrolase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D SHEWBE_4489 tatD; DNase, magnesium-dependent K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D SHEWBE_2819 Hydrolase, alpha/beta fold family protein K01175 ybfF; esterase [EC:3.1.-.-]
D SHEWBE_2988 Lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D SHEWBE_1019 conserved protein of unknown function, might belong to N-acyl-D-aspartate deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D SHEWBE_2561 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D SHEWBE_0625 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D SHEWBE_4248 pvdQ; Acyl-homoserine lactone acylase PvdQ K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97]
D SHEWBE_0957 nit; Deaminated glutathione amidase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D SHEWBE_1810 conserved protein of unknown function K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D SHEWBE_1887 8-oxoguanine deaminase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D SHEWBE_2455 yjgF; 2-iminobutanoate/2-iminopropanoate deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D SHEWBE_1225 conserved protein of unknown function K18446 ygiF; triphosphatase [EC:3.6.1.25]
D SHEWBE_3028 yceF; hypothetical protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D SHEWBE_2207 conserved protein of unknown function K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D SHEWBE_2535 conserved protein of unknown function K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D SHEWBE_2082 dhaA; Haloalkane dehalogenase K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114]
D SHEWBE_1147 yjeF; putative carbohydrate kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D SHEWBE_3750 ygeX; 2,3-diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]
D SHEWBE_2083 AMP-binding protein K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]
D SHEWBE_1239 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D SHEWBE_3037 DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D SHEWBE_2595 rsxD; putative inner membrane oxidoreductase K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D SHEWBE_2596 rsxC; putative 4Fe-4S ferredoxin-type protein fused with unknown protein K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D SHEWBE_2597 rsxB; putative iron-sulfur protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D SHEWBE_3975 nqrA; Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D SHEWBE_1814 nqrA; Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D SHEWBE_3974 nqrB; Na(+)-translocating NADH-quinone reductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D SHEWBE_1815 nqrB; Na(+)-translocating NADH-quinone reductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D SHEWBE_3973 nqrC; Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D SHEWBE_1816 nqrC; Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D SHEWBE_3972 nqrD; Na(+)-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D SHEWBE_1817 nqrD; Na(+)-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D SHEWBE_3971 rsxA; putative inner membrane subunit of an electron transport system K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D SHEWBE_1818 nqrE; Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D SHEWBE_2762 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D SHEWBE_3970 nqrF; Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D SHEWBE_1819 nqrF; Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D SHEWBE_2687 Cation transport ATPase, E1-E2 family protein K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D SHEWBE_1713 putative Acetoin utilization protein AcuB K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D SHEWBE_0442 fdhD; Sulfur carrier protein FdhD K02379 fdhD; FdhD protein
D SHEWBE_2795 Iron-sulfur cluster-binding protein K11107 yfaE; ferredoxin
D SHEWBE_2594 rsxG; putative oxidoreductase K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D SHEWBE_2593 rsxE; putative inner membrane NADH-quinone reductase K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D SHEWBE_2598 rsxA; putative inner membrane subunit of an electron transport system K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D SHEWBE_0540 mioC; FMN-binding protein MioC K06205 mioC; MioC protein
D SHEWBE_3404 iscU; iron-binding protein believed to be involved in Fe-S protein formation or repair; function as a scaffold for the assembly of the transiently bound Fe/S cluster K04488 iscU; nitrogen fixation protein NifU and related proteins
D SHEWBE_4441 norV; flavorubredoxin oxidoreductase K12264 norV; anaerobic nitric oxide reductase flavorubredoxin
D SHEWBE_2493 napD; NapD protein K02570 napD; periplasmic nitrate reductase NapD
D SHEWBE_3464 napF; Ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D SHEWBE_0088 Cytochrome c-type biogenesis protein CcmH K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF
D SHEWBE_0081 Tetratricopeptide TPR_2 repeat protein K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG
D SHEWBE_2822 fldA; flavodoxin 1 K03839 fldA; flavodoxin I
D SHEWBE_2496 napC; nitrate reductase, cytochrome c-type,periplasmic K02569 napC; cytochrome c-type protein NapC
D SHEWBE_1969 etfB; electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
D SHEWBE_4106 nrfC; formate-dependent nitrite reductase, 4Fe4S subunit K04014 nrfC; protein NrfC
D SHEWBE_0079 nrfC; formate-dependent nitrite reductase, 4Fe4S subunit K04014 nrfC; protein NrfC
D SHEWBE_4105 nrfD; formate-dependent nitrite reductase, membrane subunit K04015 nrfD; protein NrfD
D SHEWBE_0078 psrC; Polysulfide reductase chain C K04015 nrfD; protein NrfD
D SHEWBE_4091 conserved protein of unknown function K09165 K09165; dodecin
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D SHEWBE_3342 cysZ; putative inner membrane protein K06203 cysZ; CysZ protein
D SHEWBE_1774 yggS; putative enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D SHEWBE_2782 lapA; putative lipopolysaccharide assembly protein A K08992 lapA; lipopolysaccharide assembly protein A
D SHEWBE_2781 yciM; conserved hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B
D SHEWBE_2872 conserved membrane protein of unknown function K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D SHEWBE_4522 putative HemY protein K02498 hemY; HemY protein
D SHEWBE_4484 ubiB; 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D SHEWBE_4483 conserved protein of unknown function K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D SHEWBE_0012 yqiC; conserved hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D SHEWBE_1720 yhbT; putative lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D SHEWBE_0723 putative p-aminobenzoyl-glutamate transporter K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
D SHEWBE_4119 FMN reductase, NADPH-dependent K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D SHEWBE_3660 mhqP; putative oxidoreductase MhqP K15977 K15977; putative oxidoreductase
D SHEWBE_3755 conserved membrane protein of unknown function K15977 K15977; putative oxidoreductase
D SHEWBE_3067 estB; Carboxylesterase 2 K06999 K06999; phospholipase/carboxylesterase
D SHEWBE_2624 yfiQ; fused acyl-CoA synthetase: NAD(P)-binding subunit; ATP-binding subunit K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D SHEWBE_2372 cspD; cold shock protein homolog K03704 cspA; cold shock protein
D SHEWBE_2426 cspA; major cold shock protein K03704 cspA; cold shock protein
D SHEWBE_2486 cspG; DNA-binding transcriptional regulator K03704 cspA; cold shock protein
D SHEWBE_3802 cspA; major cold shock protein K03704 cspA; cold shock protein
D SHEWBE_4234 cspG; DNA-binding transcriptional regulator K03704 cspA; cold shock protein
D SHEWBE_2088 cspC; stress protein, member of the CspA-family K03704 cspA; cold shock protein
D SHEWBE_0058 Regulator of sigma D K07740 rsd; regulator of sigma D
D SHEWBE_4167 glnK; regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) K04752 glnK; nitrogen regulatory protein P-II 2
D SHEWBE_0739 putative transcriptional accessory protein, containing Tex-like domain and S1 RNA-binding domain K06959 tex; protein Tex
C 99974 Translation
D SHEWBE_3548 putative exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D SHEWBE_1444 Heat-shock protein HslJ K03668 hslJ; heat shock protein HslJ
D SHEWBE_2374 clpS; regulatory protein for ClpA substrate specificity K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D SHEWBE_2113 tig; peptidyl-prolyl cis/trans isomerase (trigger factor) K03545 tig; trigger factor
D SHEWBE_2540 yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D SHEWBE_3676 smpB; trans-translation protein K03664 smpB; SsrA-binding protein
D SHEWBE_0120 yifB; putative bifunctional enzyme and transcriptional regulator K07391 comM; magnesium chelatase family protein
D SHEWBE_0249 Oxidoreductase K07394 K07394; SM-20-related protein
D SHEWBE_2523 conserved protein of unknown function K07396 K07396; putative protein-disulfide isomerase
D SHEWBE_0746 nfuA; Fe/S biogenesis protein K07400 nfuA; Fe/S biogenesis protein NfuA
D SHEWBE_3288 putative Xanthine dehydrogenase accessory factor XdhC K07402 xdhC; xanthine dehydrogenase accessory factor
D SHEWBE_3744 yqeB; conserved hypothetical protein; putative NAD(P)-binding Rossman fold K07402 xdhC; xanthine dehydrogenase accessory factor
D SHEWBE_3055 conserved membrane protein of unknown function,might belong to Serine protease K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D SHEWBE_2559 putative methylated DNA-protein cysteine methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D SHEWBE_1851 exo; exonuclease IX (5'-3' exonuclease) K01146 xni; protein Xni
D SHEWBE_3627 conserved protein of unknown function K07454 K07454; putative restriction endonuclease
D SHEWBE_0199 yicR; protein associated with replication fork, possible DNA repair protein K03630 radC; DNA repair protein RadC
D SHEWBE_2538 rmuC; DNA recombination protein RmuC homolog K09760 rmuC; DNA recombination protein RmuC
D SHEWBE_0891 conserved protein of unknown function, might belong to UPF0102 protein K07460 yraN; putative endonuclease
D SHEWBE_2754 GIY-YIG catalytic domain protein K07461 K07461; putative endonuclease
D SHEWBE_0394 conserved protein of unknown function K07461 K07461; putative endonuclease
D SHEWBE_0627 putative DNA processing protein DprA K04096 smf; DNA processing protein
D SHEWBE_2639 ycaJ; recombination protein K07478 ycaJ; putative ATPase
D SHEWBE_0629 yrdD; DNA topoisomerase type IA zn finger domain protein K07479 yrdD; putative DNA topoisomerase
D SHEWBE_3893 conserved protein of unknown function K07482 K07482; transposase, IS30 family
D SHEWBE_3894 transposase (fragment) K07482 K07482; transposase, IS30 family
D SHEWBE_3506 insN; transposase K07483 K07483; transposase
D SHEWBE_3510 transposase (fragment) K07483 K07483; transposase
D SHEWBE_2232 conserved protein of unknown function K07484 K07484; transposase
D SHEWBE_2233 transposase K07484 K07484; transposase
D SHEWBE_2521 transposase K07484 K07484; transposase
D SHEWBE_2903 transposase K07484 K07484; transposase
D SHEWBE_2904 conserved protein of unknown function K07484 K07484; transposase
D SHEWBE_2940 conserved protein of unknown function K07484 K07484; transposase
D SHEWBE_2941 transposase K07484 K07484; transposase
D SHEWBE_3373 transposase K07484 K07484; transposase
D SHEWBE_3507 transposase K07484 K07484; transposase
D SHEWBE_3681 transposase K07484 K07484; transposase
D SHEWBE_3682 conserved protein of unknown function K07484 K07484; transposase
D SHEWBE_4375 transposase K07484 K07484; transposase
D SHEWBE_4376 transposase K07484 K07484; transposase
D SHEWBE_0612 conserved protein of unknown function K07484 K07484; transposase
D SHEWBE_0613 transposase K07484 K07484; transposase
D SHEWBE_1681 transposase (fragment) K07484 K07484; transposase
D SHEWBE_1478 transposase K07486 K07486; transposase
D SHEWBE_3482 conserved protein of unknown function K07491 rayT; REP-associated tyrosine transposase
D SHEWBE_0267 transposase K07494 K07494; putative transposase
D SHEWBE_0268 transposase K07494 K07494; putative transposase
D SHEWBE_2861 transposase K07494 K07494; putative transposase
D SHEWBE_3311 transposase K07497 K07497; putative transposase
D SHEWBE_3331 transposase K07497 K07497; putative transposase
D SHEWBE_3505 transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D SHEWBE_2132 pspA; regulatory protein for phage-shock-protein operon K03969 pspA; phage shock protein A
D SHEWBE_2196 Phage shock protein E K03972 pspE; phage shock protein E
D SHEWBE_3229 ybaB; conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D SHEWBE_3551 Proton-dependent oligopeptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D SHEWBE_4187 putative Transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D SHEWBE_1600 Proton/peptide symporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D SHEWBE_1223 putative phosphate permease HI_1604 K03306 TC.PIT; inorganic phosphate transporter, PiT family
D SHEWBE_3995 conserved membrane protein of unknown function K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D SHEWBE_0975 agcS; Sodium/alanine symporter AgcS K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D SHEWBE_1273 Uncharacterized transporter HI_0883 (fragment) K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D SHEWBE_1678 yaaJ; putative amino acid sodium/proton transporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D SHEWBE_1470 braB; Branched-chain amino acid transport system 2 carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D SHEWBE_3921 yeiM; putative sodium/proton nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D SHEWBE_3262 yciB; putative intracellular septation protein involved in cell division K06190 ispZ; intracellular septation protein
D SHEWBE_4510 conserved protein of unknown function K07322 ytfE; regulator of cell morphogenesis and NO signaling
D SHEWBE_2949 ycgB; conserved hypothetical protein K06415 spoVR; stage V sporulation protein R
D SHEWBE_0498 Peptidase, M23/M37 family protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
D SHEWBE_1520 conserved protein of unknown function K07337 K07337; penicillin-binding protein activator
D SHEWBE_1910 syd; Protein Syd K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D SHEWBE_0908 AmpE protein K03807 ampE; AmpE protein
D SHEWBE_2390 proQ; RNA chaperone ProQ K03607 proQ; ProP effector
D SHEWBE_1397 Universal stress protein UspA-like protein K06149 uspA; universal stress protein A
D SHEWBE_2691 uspE; stress-induced protein K14055 uspE; universal stress protein E
D SHEWBE_0260 bipA; GTP-binding protein K06207 typA; GTP-binding protein
D SHEWBE_4020 ybeZ; putative enzyme with nucleoside triphosphate hydrolase domain K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D SHEWBE_1001 PhoH family protein K07175 phoH2; PhoH-like ATPase
D SHEWBE_2947 yeaG; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K07180 prkA; serine protein kinase
D SHEWBE_3296 putative signal-transduction protein containing cAMP-binding and CBS domains K07182 K07182; CBS domain-containing protein
D SHEWBE_1222 conserved exported protein of unknown function K07184 ygiM; SH3 domain protein
D SHEWBE_3915 conserved protein of unknown function K07186 smp; membrane protein
D SHEWBE_3992 yajQ; putative nucleotide binding protein (UPF0234 protein) K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D SHEWBE_2638 lolA; Outer-membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D SHEWBE_4009 lolB; Outer-membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D SHEWBE_3553 putative VacJ lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D SHEWBE_2379 conserved exported protein of unknown function K06077 slyB; outer membrane lipoprotein SlyB
D SHEWBE_1938 skp; Chaperone protein Skp K06142 hlpA; outer membrane protein
D SHEWBE_3832 Peptidase M23 K06194 nlpD; lipoprotein NlpD
D SHEWBE_3924 nlpI; lipoprotein precursor K05803 nlpI; lipoprotein NlpI
D SHEWBE_1996 ompW; Outer membrane protein W K07275 ompW; outer membrane protein
D SHEWBE_1103 conserved exported protein of unknown function K07283 ydiY; putative salt-induced outer membrane protein
D SHEWBE_1455 conserved exported protein of unknown function K07283 ydiY; putative salt-induced outer membrane protein
D SHEWBE_3986 conserved exported protein of unknown function K07286 yajG; uncharacterized lipoprotein
D SHEWBE_2544 AsmA protein K07289 asmA; AsmA protein
D SHEWBE_0033 conserved protein of unknown function K07340 ybbJ; inner membrane protein
D SHEWBE_0961 36 kDa antigen K01993 ABC-2.TX; HlyD family secretion protein
D SHEWBE_3111 conserved protein of unknown function, might belong to Membrane-fusion protein K02005 ABC.CD.TX; HlyD family secretion protein
D SHEWBE_3112 conserved protein of unknown function, might belong to Membrane-fusion protein K02005 ABC.CD.TX; HlyD family secretion protein
D SHEWBE_0467 conserved protein of unknown function K02005 ABC.CD.TX; HlyD family secretion protein
D SHEWBE_3387 tqsA; AI-2 transport protein TqsA K11744 tqsA; AI-2 transport protein TqsA
D SHEWBE_0292 ccmE; periplasmic heme chaperone K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D SHEWBE_0283 nrfF; Formate-dependent nitrite reductase complex subunit K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D SHEWBE_0286 ccmI; C-type cytochrome biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D SHEWBE_3655 conserved protein of unknown function K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D SHEWBE_2075 phoU; negative regulator of PhoR/PhoB two-component regulator K02039 phoU; phosphate transport system protein
D SHEWBE_1135 Bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin
D SHEWBE_4219 apaG; protein associated with Co2+ and Mg2+ efflux K06195 apaG; ApaG protein
D SHEWBE_4517 cyaY; frataxin, iron-binding and oxidizing protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D SHEWBE_0076 Periplasmic copper-binding K07218 nosD; nitrous oxidase accessory protein
D SHEWBE_0443 conserved protein of unknown function K07219 K07219; putative molybdopterin biosynthesis protein
D SHEWBE_4281 putative lipoprotein K07231 K07231; putative iron-regulated protein
D SHEWBE_2530 Copper resistance protein B K07233 pcoB; copper resistance protein B
D SHEWBE_1422 conserved membrane protein of unknown function K07234 K07234; uncharacterized protein involved in response to NO
D SHEWBE_1742 conserved membrane protein of unknown function K07234 K07234; uncharacterized protein involved in response to NO
D SHEWBE_0526 ychN; conserved hypothetical protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
D SHEWBE_0077 NosL family protein K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D SHEWBE_2241 cvpA; membrane protein required for colicin V production K03558 cvpA; membrane protein required for colicin V production
D SHEWBE_2694 putative Bax protein K03796 bax; Bax protein
D SHEWBE_0044 elaA; Protein ElaA K02348 elaA; ElaA protein
D SHEWBE_3470 ycdX; putative PHP hydrolase K04477 ycdX; putative hydrolase
D SHEWBE_3778 conserved protein of unknown function, low identity with Globin-like protein K06886 glbN; hemoglobin
D SHEWBE_4343 conserved protein of unknown function K06886 glbN; hemoglobin
D SHEWBE_2182 rssA; NTE family protein RssA K07001 K07001; NTE family protein
D SHEWBE_0917 conserved exported protein of unknown function, might be Patatin K07001 K07001; NTE family protein
D SHEWBE_1952 conserved protein of unknown function K07001 K07001; NTE family protein
D SHEWBE_1588 yadR; putative chaperone involved in Fe-S cluster assembly and activation; hesB-like K15724 erpA; iron-sulfur cluster insertion protein
D SHEWBE_0253 rbn; conserved hypothetical protein; putative inner membrane protein K07058 K07058; membrane protein
D SHEWBE_4392 FxsA protein K07113 fxsA; UPF0716 protein FxsA
D SHEWBE_1435 ygdK; putative Fe-S metabolism protein (sufE-like) K02426 sufE; cysteine desulfuration protein SufE
D SHEWBE_3057 conserved protein of unknown function K07146 K07146; UPF0176 protein
D SHEWBE_2367 hflD; putative inner membrane protein; lambda lysogenization regulator, UPF0274 family K07153 hflD; high frequency lysogenization protein
D SHEWBE_0726 putative LemA protein, transmembrane protein with an extracellular N terminus, function unknown K03744 lemA; LemA protein
D SHEWBE_1524 slyX; Protein SlyX homolog K03745 slyX; SlyX protein
D SHEWBE_0628 smg; conserved hypothetical protein K03747 smg; Smg protein
D SHEWBE_3052 CreA protein K05805 creA; CreA protein
D SHEWBE_4359 sprT; conserved hypothetical protein K02742 sprT; SprT protein
D SHEWBE_2240 conserved protein of unknown function K03749 dedD; DedD protein
D SHEWBE_0879 DamX domain protein K03112 damX; DamX protein
D SHEWBE_2386 conserved membrane protein of unknown function K03808 pqiA; paraquat-inducible protein A
D SHEWBE_2387 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D SHEWBE_1551 conserved membrane protein of unknown function K08974 K08974; putative membrane protein
D SHEWBE_1417 conserved membrane protein of unknown function K08981 K08981; putative membrane protein
D SHEWBE_4334 yjdF; conserved hypothetical protein; putative inner membrane protein K08984 yjdF; putative membrane protein
D SHEWBE_2137 conserved membrane protein of unknown function K08990 ycjF; putative membrane protein
D SHEWBE_2610 conserved protein of unknown function K09858 K09858; SEC-C motif domain protein
D SHEWBE_2650 conserved exported protein of unknown function K09914 K09914; putative lipoprotein
D SHEWBE_1994 conserved exported protein of unknown function K09914 K09914; putative lipoprotein
D SHEWBE_4511 protein of unknown function K11312 K11312; cupin 2 domain-containing protein
D SHEWBE_0503 protein of unknown function K11312 K11312; cupin 2 domain-containing protein
D SHEWBE_1425 conserved protein of unknown function K11312 K11312; cupin 2 domain-containing protein
D SHEWBE_3410 conserved protein of unknown function K13256 psiE; protein PsiE
D SHEWBE_3777 PhnA protein K06193 phnA; protein PhnA
D SHEWBE_0013 conserved membrane protein of unknown function K21741 rclC; reactive chlorine resistance protein C
C 99997 Function unknown
D SHEWBE_3491 conserved protein of unknown function K06888 K06888; uncharacterized protein
D SHEWBE_2053 conserved protein of unknown function, containing alpha/beta-Hydrolases domain K06889 K06889; uncharacterized protein
D SHEWBE_3119 protein of unknown function K06893 K06893; uncharacterized protein
D SHEWBE_2136 ycjX; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K06918 K06918; uncharacterized protein
D SHEWBE_0463 conserved protein of unknown function K06933 K06933; uncharacterized protein
D SHEWBE_4203 putative Fe-S protein K06938 K06938; uncharacterized protein
D SHEWBE_2078 conserved protein of unknown function K06938 K06938; uncharacterized protein
D SHEWBE_0502 yeiW; conserved hypothetical protein K06940 K06940; uncharacterized protein
D SHEWBE_1474 conserved protein of unknown function K06983 K06983; uncharacterized protein
D SHEWBE_1288 conserved protein of unknown function K06987 K06987; uncharacterized protein
D SHEWBE_2673 conserved protein of unknown function, might belong to Glyoxalase K06991 K06991; uncharacterized protein
D SHEWBE_3212 ycfP; conserved hypothetical protein K07000 K07000; uncharacterized protein
D SHEWBE_1131 yqiA; putative esterase K07000 K07000; uncharacterized protein
D SHEWBE_2397 conserved membrane protein of unknown function K07003 K07003; uncharacterized protein
D SHEWBE_3103 putative Extracellular nuclease K07004 K07004; uncharacterized protein
D SHEWBE_4332 Endonuclease/exonuclease/phosphatase (fragment) K07004 K07004; uncharacterized protein
D SHEWBE_2294 conserved membrane protein of unknown function K07014 K07014; uncharacterized protein
D SHEWBE_1180 yheT; putative hydrolase K07019 K07019; uncharacterized protein
D SHEWBE_1840 conserved protein of unknown function K07020 K07020; uncharacterized protein
D SHEWBE_4188 yaaH; conserved hypothetical protein; putative inner membrane protein associated with acetate transport K07034 K07034; uncharacterized protein
D SHEWBE_1192 conserved protein of unknown function K07070 K07070; uncharacterized protein
D SHEWBE_3389 yfcH; conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain K07071 K07071; uncharacterized protein
D SHEWBE_4135 Predicted permease (fragment) K07089 K07089; uncharacterized protein
D SHEWBE_0048 conserved membrane protein of unknown function K07089 K07089; uncharacterized protein
D SHEWBE_2148 putative membrane transporter protein K07090 K07090; uncharacterized protein
D SHEWBE_2169 yfcA; conserved hypothetical protein; putative inner membrane protein K07090 K07090; uncharacterized protein
D SHEWBE_4435 putative membrane transporter protein K07090 K07090; uncharacterized protein
D SHEWBE_1617 putative membrane transporter protein K07090 K07090; uncharacterized protein
D SHEWBE_1518 Hypoxanthine-guanine phosphoribosyltransferase K07101 K07101; uncharacterized protein
D SHEWBE_3255 yedE; conserved hypothetical protein; putative inner membrane protein K07112 K07112; uncharacterized protein
D SHEWBE_0892 putative Lipoprotein K07121 K07121; uncharacterized protein
D SHEWBE_0804 conserved protein of unknown function, might be Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D SHEWBE_1174 conserved protein of unknown function K07126 K07126; uncharacterized protein
D SHEWBE_2732 conserved protein of unknown function,might belong to FAD dependent oxidoreductase K07137 K07137; uncharacterized protein
D SHEWBE_1609 yhcC; putative Fe-S oxidoreductase K07139 K07139; uncharacterized protein
D SHEWBE_4449 putative ATP-dependent protease La (LON) domain protein K07157 K07157; uncharacterized protein
D SHEWBE_0573 yidD; hypothetical protein K08998 K08998; uncharacterized protein
D SHEWBE_1567 conserved protein of unknown function K09117 K09117; uncharacterized protein
D SHEWBE_4185 conserved protein of unknown function, might belong to AMMECR1 domain protein K09141 K09141; uncharacterized protein
D SHEWBE_4042 ybeD; conserved hypothetical protein K09158 K09158; uncharacterized protein
D SHEWBE_2470 ycgN; conserved hypothetical protein K09160 K09160; uncharacterized protein
D SHEWBE_1419 conserved protein of unknown function K09167 K09167; uncharacterized protein
D SHEWBE_2899 conserved protein of unknown function K09707 K09707; uncharacterized protein
D SHEWBE_4368 conserved protein of unknown function K09749 K09749; uncharacterized protein
D SHEWBE_3775 yaiI; conserved hypothetical protein K09768 K09768; uncharacterized protein
D SHEWBE_3263 yciI; putative enzyme K09780 K09780; uncharacterized protein
D SHEWBE_2948 yeaH; conserved hypothetical protein K09786 K09786; uncharacterized protein
D SHEWBE_3233 ybaN; conserved hypothetical protein; putative inner membrane protein K09790 K09790; uncharacterized protein
D SHEWBE_3199 ycaR; conserved hypothetical protein K09791 K09791; uncharacterized protein
D SHEWBE_2689 conserved membrane protein of unknown function K09792 K09792; uncharacterized protein
D SHEWBE_1366 conserved protein of unknown function K09794 K09794; uncharacterized protein
D SHEWBE_2197 conserved protein of unknown function K09797 K09797; uncharacterized protein
D SHEWBE_0500 conserved exported protein of unknown function K09798 K09798; uncharacterized protein
D SHEWBE_3674 conserved protein of unknown function K09801 K09801; uncharacterized protein
D SHEWBE_4310 conserved exported protein of unknown function K09807 K09807; uncharacterized protein
D SHEWBE_3968 conserved protein of unknown function K05952 K05952; uncharacterized protein
D SHEWBE_2430 conserved protein of unknown function K00243 K00243; uncharacterized protein
D SHEWBE_1521 TPR domain protein K09859 K09859; uncharacterized protein
D SHEWBE_1679 yaaA; conserved hypothetical protein; family UPF0246 K09861 K09861; uncharacterized protein
D SHEWBE_0898 yacG; DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein
D SHEWBE_3845 conserved protein of unknown function K09891 K09891; uncharacterized protein
D SHEWBE_0669 yihI; Der GTPase-activating protein YihI K09894 K09894; uncharacterized protein
D SHEWBE_1356 conserved protein of unknown function K09895 K09895; uncharacterized protein
D SHEWBE_1179 conserved protein of unknown function K09898 K09898; uncharacterized protein
D SHEWBE_3379 conserved protein of unknown function K09899 K09899; uncharacterized protein
D SHEWBE_2468 ycgL; conserved hypothetical protein K09902 K09902; uncharacterized protein
D SHEWBE_2295 yejL; conserved hypothetical protein K09904 K09904; uncharacterized protein
D SHEWBE_2308 yecM; Protein YecM K09907 K09907; uncharacterized protein
D SHEWBE_2146 conserved exported protein of unknown function K09909 K09909; uncharacterized protein
D SHEWBE_2269 conserved exported protein of unknown function K09909 K09909; uncharacterized protein
D SHEWBE_1528 conserved protein of unknown function K09910 K09910; uncharacterized protein
D SHEWBE_2778 conserved protein of unknown function K09912 K09912; uncharacterized protein
D SHEWBE_2429 conserved protein of unknown function K09915 K09915; uncharacterized protein
D SHEWBE_2799 conserved protein of unknown function K09916 K09916; uncharacterized protein
D SHEWBE_2388 conserved protein of unknown function K09918 K09918; uncharacterized protein
D SHEWBE_3088 conserved protein of unknown function K09919 K09919; uncharacterized protein
D SHEWBE_1129 conserved protein of unknown function K09920 K09920; uncharacterized protein
D SHEWBE_4514 conserved protein of unknown function K09921 K09921; uncharacterized protein
D SHEWBE_1761 yggL; hypothetical protein K09923 K09923; uncharacterized protein
D SHEWBE_2686 conserved protein of unknown function K09926 K09926; uncharacterized protein
D SHEWBE_3203 conserved membrane protein of unknown function K09928 K09928; uncharacterized protein
D SHEWBE_3234 conserved protein of unknown function K09929 K09929; uncharacterized protein
D SHEWBE_3235 conserved protein of unknown function K09930 K09930; uncharacterized protein
D SHEWBE_1096 conserved protein of unknown function K09937 K09937; uncharacterized protein
D SHEWBE_2943 conserved exported protein of unknown function K09938 K09938; uncharacterized protein
D SHEWBE_2058 conserved protein of unknown function K09941 K09941; uncharacterized protein
D SHEWBE_3664 conserved protein of unknown function K09954 K09954; uncharacterized protein
D SHEWBE_0982 conserved protein of unknown function K09973 K09973; uncharacterized protein
D SHEWBE_3101 ydbL; conserved hypothetical protein K09978 K09978; uncharacterized protein
D SHEWBE_1230 conserved protein of unknown function K09980 K09980; uncharacterized protein
D SHEWBE_2360 conserved protein of unknown function K09986 K09986; uncharacterized protein
D SHEWBE_1224 conserved protein of unknown function K07220 K07220; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 21, 2024