+D Messenger RNA Biogenesis KO #

  Prokaryotic Defense System - Shigella boydii Sb227 (serotype 4)

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ACRISPR-Cas system B Universal Cas proteins C SBO_2765 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 C SBO_2766 ygbF; conserved hypothetical protein K09951 cas2; CRISPR-associated protein Cas2 B Type I CRISPR-Cas system C Type I signiture cas proteins D SBO_2759 ygcB; putative helicase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] C Subtype I-A factors C Subtype I-B factors C Subtype I-C factors C Subtype I-D factors C Subtype I-E factors D SBO_2760 putative cytoplasmic protein K19123 casA; CRISPR system Cascade subunit CasA D SBO_2761 conserved hypothetical protein K19046 casB; CRISPR system Cascade subunit CasB D SBO_2762 yghJ; putative cytoplasmic protein K19124 casC; CRISPR system Cascade subunit CasC D SBO_2763 putative cytoplasmic protein K19125 casD; CRISPR system Cascade subunit CasD D SBO_2764 conserved hypothetical protein K19126 casE; CRISPR system Cascade subunit CasE C Subtype I-F factors C Subtype I-U factors B Type II CRISPR-Cas system C Type II signiture cas proteins C Subtype II-A factors C Subtype II-B factors B Type III CRISPR-Cas system C Type III signiture cas proteins C Subtype III-A factors C Subtype III-B factors C Subtype III-U factors # ARestriction and modification system (R-M system) B Type I R-M system C SBO_4158 putative type I restriction enzyme R protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] C SBO_4160 putative type I restriction-modification system specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] C SBO_4159 putative type I restriction enzyme M protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] B Type II R-M system C Restriction endonucleases C DNA methyltransferases D SBO_3374 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D SBO_0751 putative DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D SBO_3256 yhdJ; putative methyltransferase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D SBO_1934 putative DNA adenine methyltransferase encoded by prophage K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D SBO_1935 putative DNA adenine methyltransferase encoded by prophage K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D SBO_1047 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] B Type III R-M system B Type IV R-M system # AToxin-antitoxin system (TA system) B Type I TA system C Hok-Sok D SBO_3559 yiaZ; Putative membrane permeability altering protein K18920 hokA; protein HokA D SBO_0017 gef; Gef K18919 hokC_D; protein HokC/D D SBO_0963 relF; RelF K18919 hokC_D; protein HokC/D C SymE-SymR C Ldr-Rdl D SBO_1851 conserved hypothetical protein K18862 ldrA_B_C_D; small toxic polypeptide LdrA/B/C/D C TisB-IstR C Ibs-Sib C ShoB-OhsC C RalR-RalA D SBO_1713 ydaC; conserved hypothetical protein K19780 ralA; antisense regulator of RalR protein B Type II TA system C MazF-MazE D SBO_2663 chpA; ChpA K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D SBO_2664 chpR; ChpR K07172 mazE; antitoxin MazE C ChpB-ChpS C YhaV-PrlF C RelE/StbE-RelB/StbD C YafQ-dinJ C YoeB-YefM D SBO_0843 yefM; conserved hypothetical protein K19159 yefM; antitoxin YefM C HipA-HipB D SBO_P091 putative bacteriophage protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB C HicA-HicB C YafO-YafN C Hha-TomB D SBO_0360 hha; haemolysin expression modulating protein K05839 hha; haemolysin expression modulating protein D SBO_P131 hmo; putative regulator K05839 hha; haemolysin expression modulating protein D SBO_0361 ybaJ; conserved hypothetical protein K19162 tomB; hha toxicity modulator TomB C PspC-PspB D SBO_1756 pspC; phage shock protein K03973 pspC; phage shock protein C D SBO_1757 pspB; phage shock protein K03970 pspB; phage shock protein B C CcdB-CcdA D SBO_P112 ccdB; post-segregation toxin K19163 ccdB; toxin CcdB D SBO_P111 ccdA; post-segregation antitoxin K19164 ccdA; antitoxin CcdA C ParE-ParD C Doc-Phd C HigB-HigA D SBO_2944 ygjN; conserved hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D SBO_2943 ygjM; conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D SBO_0385 ybaQ; conserved hypothetical protein K21498 higA-1; antitoxin HigA-1 D SBO_1580 yddM; conserved hypothetical protein K21498 higA-1; antitoxin HigA-1 C MqsR-MqsA C VapC-VapB D SBO_P124 mvpT; plasmid maintenance protein K18829 mvpT; antitoxin VapB C PezT-PezA C YobL-YobK C YokI-YokJ C YqcG-YqcF C YxiD-YxxD C FitB-FitA C BC_0920-BC_0921 C Type II TA system related factors D SBO_4195 yjgK; conserved hypothetical protein K19334 tabA; biofilm protein TabA D SBO_0728 putative receptor K19688 bssR; biofilm regulator BssR D SBO_1949 ycfR; conserved hypothetical protein K12151 bhsA; multiple stress resistance protein BhsA D SBO_3137 mreB; penicillin binding protein 3 K03569 mreB; rod shape-determining protein MreB and related proteins D SBO_2881 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D SBO_2888 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D SBO_2426 gltX; glutamate tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] B Type III TA system C AbiQ system B Type IV TA system C YeeV-YeeU C CptA-CptB D SBO_3096 conserved hypothetical protein K19168 cptA; toxin CptA D SBO_3095 ygfY; conserved hypothetical protein K09159 cptB; antitoxin CptB B Type V TA system C GhoT-GhoS # ADNA phosphothiolation system B Sulfur modification proteins C SBO_2554 yfhO; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] B DNA phosphorothioation-dependent restriction proteins ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023