+F Repair protein KO #

  DNA Repair and Recombination Proteins - Shewanella baltica OS678

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Sbal678_2949 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Sbal678_3217 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Sbal678_1094 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Sbal678_3202 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Sbal678_2108 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors E Sbal678_0384 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Sbal678_4099 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Sbal678_4051 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Sbal678_3496 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Sbal678_0394 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Sbal678_2949 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Sbal678_0925 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Sbal678_3217 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Sbal678_0465 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E Sbal678_1094 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Sbal678_2950 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Sbal678_3202 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Sbal678_0014 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Sbal678_4493 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Sbal678_2108 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Sbal678_2823 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E Sbal678_3664 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Sbal678_2763 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Sbal678_4514 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Sbal678_0590 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Sbal678_2162 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Sbal678_2679 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Sbal678_4045 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Sbal678_4514 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E Sbal678_2763 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Sbal678_0198 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Sbal678_0199 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Sbal678_0230 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Sbal678_0366 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Sbal678_2512 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Sbal678_3277 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E Sbal678_3925 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E Sbal678_1290 DNA mismatch repair endonuclease mutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E Sbal678_1756 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E Sbal678_3149 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Sbal678_1418 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Sbal678_1532 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Sbal678_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Sbal678_3270 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E Sbal678_3464 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Sbal678_2574 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Sbal678_2755 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Sbal678_2460 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Sbal678_2064 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Sbal678_2694 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Sbal678_2763 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Sbal678_4045 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Sbal678_0592 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E Sbal678_2161 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Sbal678_4232 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Sbal678_2096 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E Sbal678_2097 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E Sbal678_2095 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Sbal678_0598 AAA ATPase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Sbal678_3276 recA protein K03553 recA; recombination protein RecA E Sbal678_2421 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Sbal678_2420 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Sbal678_2422 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Sbal678_0503 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Sbal678_0760 single-strand binding protein/Primosomal replication protein n K02686 priB; primosomal replication protein N E Sbal678_1690 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N'' E Sbal678_1756 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E Sbal678_1715 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Sbal678_1714 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Sbal678_3276 recA protein K03553 recA; recombination protein RecA E Sbal678_3365 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Sbal678_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Sbal678_0358 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Sbal678_3664 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Sbal678_1310 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Sbal678_2692 recombination protein RecR K06187 recR; recombination protein RecR E Sbal678_3303 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Sbal678_1436 exonuclease RdgC K03554 rdgC; recombination associated protein RdgC E Sbal678_2421 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Sbal678_2420 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Sbal678_2422 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E Sbal678_3384 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E Sbal678_1831 type III restriction protein res subunit K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E Sbal678_1715 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Sbal678_1714 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 E Sbal678_4055 protein of unknown function DUF853 NPT hydrolase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Sbal678_2404 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Sbal678_0004 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Sbal678_2612 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Sbal678_1840 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F Sbal678_3974 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F Sbal678_1670 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Sbal678_3664 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Sbal678_1310 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Sbal678_2692 recombination protein RecR K06187 recR; recombination protein RecR F Sbal678_2763 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F Sbal678_4114 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F Sbal678_1948 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F Sbal678_2395 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F Sbal678_1756 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F Sbal678_2377 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Sbal678_0403 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Sbal678_0590 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Sbal678_2162 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B F Sbal678_3006 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Sbal678_3573 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Sbal678_2458 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D Sbal678_2040 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D Sbal678_4436 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D Sbal678_4610 UMUC domain protein DNA-repair protein K03502 umuC; DNA polymerase V D Sbal678_2457 Peptidase S24/S26A/S26B, conserved region K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Sbal678_2039 Peptidase S24/S26A/S26B, conserved region K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Sbal678_4437 Peptidase S24/S26A/S26B, conserved region K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D Sbal678_3276 recA protein K03553 recA; recombination protein RecA D Sbal678_4342 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D Sbal678_3303 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Sbal678_1693 DNA polymerase B region K02336 polB; DNA polymerase II [EC:2.7.7.7] D Sbal678_0592 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Sbal678_3275 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Sbal678_4139 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Sbal678_4115 UvrD/REP helicase K03658 helD; DNA helicase IV [EC:5.6.2.4] D Sbal678_1692 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Sbal678_2534 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D Sbal678_4099 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Sbal678_4051 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Sbal678_3496 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Sbal678_0394 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Sbal678_2407 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Sbal678_2408 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024