+E Ribosome biogenesis KO
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Ribosome Biogenesis - Streptomyces cadmiisoli
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D DN051_12365 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D DN051_24585 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
D DN051_35980 AAA family ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
C Other pre-60S particles
B Other ribosome biogenesis factors
C DN051_25850 GTPase Era K03595 era; GTPase
C DN051_25510 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C DN051_39140 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
C DN051_39145 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
C DN051_28035 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C DN051_11915 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C DN051_31260 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C DN051_17010 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D DN051_22835 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D DN051_31350 rRNA cytosine-C5-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DN051_12390 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D DN051_25755 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D DN051_19815 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DN051_27945 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D DN051_22815 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D DN051_29675 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D DN051_21505 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D DN051_33705 methyltransferase domain-containing protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D DN051_12135 dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D DN051_29675 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D DN051_30530 pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D DN051_29765 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D DN051_28045 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C DN051_16660 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C DN051_09530 N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C DN051_22685 N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C DN051_12770 N-acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C DN051_12255 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C DN051_11760 rimO; 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C DN051_06490 bacteriocin biosynthesis protein SagD K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C DN051_06525 cyclodehydratase K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
B rRNA processing factors
C DN051_12365 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C DN051_25495 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12]
C DN051_31215 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C DN051_25850 GTPase Era K03595 era; GTPase
C DN051_10265 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C DN051_14330 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C DN051_29805 ribosome biogenesis GTPase Der K03977 engA; GTPase
C DN051_25510 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C DN051_11550 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C DN051_13400 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C DN051_11560 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C DN051_31160 RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C DN051_11895 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
C DN051_11920 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C DN051_25600 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
C DN051_25825 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
C DN051_14960 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
C DN051_12375 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024