+D GENES KO
#
KEGG Orthology (KO) - Streptococcus parasanguinis FW213
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:scf00010]
D Spaf_1149 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Spaf_1967 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Spaf_0782 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Spaf_1266 fbp3; fructose-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D Spaf_0481 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Spaf_1438 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Spaf_1898 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Spaf_1894 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Spaf_0617 pgaM3; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0248 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0483 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_1415 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Spaf_0783 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Spaf_1269 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Spaf_1063 pdhA; Acetoin dehydrogenase, E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Spaf_1062 pdhB; acetoin dehydrogenase, E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Spaf_1061 pdhC; dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Spaf_0644 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_0976 ldh; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_0058 adhE; alcohol dehydrogenase, iron-containing K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Spaf_0170 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Spaf_0052 galM; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Spaf_0997 manB; Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Spaf_0372 bglB; prolyl-tRNA synthetase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D Spaf_1772 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
C 00020 Citrate cycle (TCA cycle) [PATH:scf00020]
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Spaf_1063 pdhA; Acetoin dehydrogenase, E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Spaf_1062 pdhB; acetoin dehydrogenase, E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Spaf_1061 pdhC; dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:scf00030]
D Spaf_1967 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Spaf_1471 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Spaf_1413 3-carboxymuconate cyclase, putative K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D Spaf_1618 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Spaf_1908 Pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Spaf_0358 Transaldolase-like protein K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Spaf_0937 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Spaf_1713 putative phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D Spaf_1221 deoC; Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D Spaf_0939 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Spaf_0997 manB; Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Spaf_0020 Ribose-phosphate pyrophosphokinase 1 K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Spaf_0986 prsA2; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Spaf_0481 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Spaf_1266 fbp3; fructose-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D Spaf_0782 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:scf00040]
D Spaf_1954 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Spaf_1908 Pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Spaf_1784 rhamnulokinase (rhamnulose kinase) K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D Spaf_1782 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
C 00051 Fructose and mannose metabolism [PATH:scf00051]
D Spaf_1681 scrK; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Spaf_1675 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Spaf_1783 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D Spaf_1784 rhamnulokinase (rhamnulose kinase) K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D Spaf_1782 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D Spaf_0782 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Spaf_1266 fbp3; fructose-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D Spaf_1160 fruK; 1-phosphofructokinase, putative K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D Spaf_0481 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Spaf_1438 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Spaf_1158 fruA; Phosphotransferase system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D Spaf_0050 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Spaf_0169 manL; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D Spaf_0047 PTS system, IIC component K02795 manY; mannose PTS system EIIC component
D Spaf_0168 manM; Phosphotransferase system, mannose-specific EIIC K02795 manY; mannose PTS system EIIC component
D Spaf_0311 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D Spaf_0048 Phosphotransferase system sugar-specific EIID component K02796 manZ; mannose PTS system EIID component
D Spaf_0167 manN; Phosphotransferase system, mannose-specific EIID K02796 manZ; mannose PTS system EIID component
C 00052 Galactose metabolism [PATH:scf00052]
D Spaf_0052 galM; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Spaf_1315 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Spaf_1313 galT; Galactose-1-phosphate-uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Spaf_1312 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Spaf_1954 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Spaf_0997 manB; Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Spaf_1149 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Spaf_1988 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Spaf_1774 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Spaf_0045 bgaC; Beta-galactosidase 3 K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D Spaf_1321 galA; alpha-galactosidase AgaN K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Spaf_1256 lacC; tagatose-6-phosphate kinase K00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144]
D Spaf_0782 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Spaf_1255 lacD; Tagatose-1,6-bisphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D Spaf_1257 lacA2; galactose-6-phosphate isomerase subunit LacB K01819 E5.3.1.26; galactose-6-phosphate isomerase [EC:5.3.1.26]
D Spaf_1258 lacA; galactose-6-phosphate isomerase, LacA subunit K01819 E5.3.1.26; galactose-6-phosphate isomerase [EC:5.3.1.26]
D Spaf_1251 lacG; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase K01220 E3.2.1.85; 6-phospho-beta-galactosidase [EC:3.2.1.85]
D Spaf_1253 lacF2; cellobiose-specific PTS system IIA component K02786 lacF; lactose PTS system EIIA component [EC:2.7.1.207]
D Spaf_1252 lacE; Phosphotransferase system lactose-specific component IIBC K02788 lacE; lactose PTS system EIICB component [EC:2.7.1.207]
D Spaf_1684 scrB; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D Spaf_0605 scrB2; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D Spaf_0439 alpha amylase, catalytic region K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D Spaf_0309 PTS system, sugar-specific enzyme IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D Spaf_0051 agaS; sugar isomerase domain-containing protein AgaS K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:scf00500]
D Spaf_1682 scrA; phosphotransferase system IIC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D Spaf_1684 scrB; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D Spaf_0605 scrB2; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D Spaf_1317 sucrose phosphorylase K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D Spaf_1954 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Spaf_0354 celC; putative PTS system, enzyme III K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Spaf_0355 celA; Phosphotransferase system (PTS), cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Spaf_0356 celB; PTS lactose/cellobiose IIC component K02761 celB; cellobiose PTS system EIIC component
D Spaf_0651 cellobiose PTS system component IIC K02761 celB; cellobiose PTS system EIIC component
D Spaf_0372 bglB; prolyl-tRNA synthetase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D Spaf_1772 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D Spaf_0736 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Spaf_0737 glgC2; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Spaf_0738 glgA; Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D Spaf_0735 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Spaf_2047 glgP; maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Spaf_0856 Pullulanase K01200 pulA; pullulanase [EC:3.2.1.41]
D Spaf_2057 pulA; Type II secretory pathway, pullulanase PulA glycosidase K01200 pulA; pullulanase [EC:3.2.1.41]
D Spaf_1294 amyA; Alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D Spaf_0902 Neopullulanase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D Spaf_0439 alpha amylase, catalytic region K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D Spaf_2048 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Spaf_1779 HAD-superfamily hydrolase, subfamily IA, variant 3 family protein K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6]
D Spaf_1615 ptsG; PTS system, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D Spaf_1614 hypothetical protein K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90]
D Spaf_1559 treB; pts system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D Spaf_1558 treC; putative trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D Spaf_0997 manB; Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Spaf_1149 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Spaf_1967 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Spaf_1681 scrK; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:scf00520]
D Spaf_1777 beta-hexosamidase a, glycoside hydrolase family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Spaf_1316 nagZ3; Beta-hexosamidase A K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Spaf_0471 nagZ2; glycosyl hydrolase-related protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Spaf_0259 glycosyl hydrolase-related protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Spaf_0191 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D Spaf_0720 nagB; glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D Spaf_1681 scrK; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Spaf_0373 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Spaf_0764 glmM; Phosphoglucomutase/phosphomannomutase family protein K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Spaf_0674 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Spaf_0749 murA; UDP-N-acetylglucosamine-like protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Spaf_0844 murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Spaf_1281 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Spaf_0064 nanE; N-acetylmannosamine-6-p hosphate 2-epimerase 1 K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D Spaf_0070 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D Spaf_2005 cpsFK; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Spaf_0279 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Spaf_1780 beta-xylosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D Spaf_1149 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Spaf_0997 manB; Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Spaf_1954 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Spaf_1315 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Spaf_1313 galT; Galactose-1-phosphate-uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Spaf_1312 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Spaf_0050 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Spaf_0169 manL; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D Spaf_0047 PTS system, IIC component K02795 manY; mannose PTS system EIIC component
D Spaf_0168 manM; Phosphotransferase system, mannose-specific EIIC K02795 manY; mannose PTS system EIIC component
D Spaf_0311 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D Spaf_0048 Phosphotransferase system sugar-specific EIID component K02796 manZ; mannose PTS system EIID component
D Spaf_0167 manN; Phosphotransferase system, mannose-specific EIID K02796 manZ; mannose PTS system EIID component
D Spaf_1967 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Spaf_1675 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Spaf_0736 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Spaf_0737 glgC2; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:scf00620]
D Spaf_1063 pdhA; Acetoin dehydrogenase, E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Spaf_1062 pdhB; acetoin dehydrogenase, E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Spaf_1061 pdhC; dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Spaf_1817 pflD2; Formate acetyltransferase 3 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Spaf_0058 adhE; alcohol dehydrogenase, iron-containing K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Spaf_0170 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Spaf_0293 ackA; Acetate kinase, putative K00925 ackA; acetate kinase [EC:2.7.2.1]
D Spaf_0992 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Spaf_0783 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Spaf_0163 accA; Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Spaf_0159 accB; Biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Spaf_0161 accC; Biotin carboxylase, putative K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Spaf_0162 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Spaf_1599 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Spaf_1788 poxL; pyruvate oxidase K00158 spxB; pyruvate oxidase [EC:1.2.3.3]
D Spaf_0644 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_0976 ldh; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_0816 gloA; Lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Spaf_1427 Zn-dependent hydrolase, including glyoxylase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Spaf_1440 Phosphoenolpyruvate carboxylase, putative K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Spaf_1269 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Spaf_0961 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:scf00630]
D Spaf_2090 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Spaf_1972 HAD superfamily hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Spaf_1891 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Spaf_1033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Spaf_1417 glxK; Glycerate kinase, putative K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
C 00640 Propanoate metabolism [PATH:scf00640]
D Spaf_0293 ackA; Acetate kinase, putative K00925 ackA; acetate kinase [EC:2.7.2.1]
D Spaf_0869 putative NADH-dependent flavin oxidoreductase K26355 ard; acrylate reductase [EC:1.3.1.125]
D Spaf_0992 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Spaf_1817 pflD2; Formate acetyltransferase 3 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Spaf_0163 accA; Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Spaf_0159 accB; Biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Spaf_0161 accC; Biotin carboxylase, putative K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Spaf_0162 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Spaf_0644 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_0976 ldh; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_0359 gldA; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
C 00650 Butanoate metabolism [PATH:scf00650]
D Spaf_0058 adhE; alcohol dehydrogenase, iron-containing K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Spaf_1817 pflD2; Formate acetyltransferase 3 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Spaf_1821 pksG; hydroxymethylglutaryl-CoA synthase, putative K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D Spaf_0062 Zn-dependent alcohol dehydrogenase K18369 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D Spaf_0509 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Spaf_0510 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Spaf_1410 alsD; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D Spaf_1654 L-iditol 2-dehydrogenase K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
D Spaf_0915 putative acetoin reductase K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:scf00660]
D Spaf_0509 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Spaf_0510 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Spaf_1410 alsD; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D Spaf_0964 leuC; isopropylmalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Spaf_0965 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Spaf_0962 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:scf00562]
D Spaf_0798 suhB; Mg++ dependent inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Spaf_1438 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:scf00190]
D Spaf_0744 atpA; proton-translocating ATPase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Spaf_0746 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Spaf_0745 atpG; Proton-translocating ATPase, F1 sector, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Spaf_0743 atpH; proton-translocating ATPase, F1 sector, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Spaf_0747 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Spaf_0741 atpB; proton-translocating ATPase, F0 sector, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Spaf_0742 atpF; AtpB K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Spaf_0740 atpE; UncE K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Spaf_0080 ntpA; V-type sodium ATPase, subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Spaf_0081 ntpB; V-type sodium ATPase, subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Spaf_0077 ntpC; V-type sodium ATPase, subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D Spaf_0082 ntpD; V-type sodium ATPase, subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Spaf_0076 ntpE; V-type sodium ATPase, subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D Spaf_0078 ntpF; V-type sodium ATPase, subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D Spaf_0073 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D Spaf_0074 ntpI; V-type sodium ATPase, subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Spaf_0075 ntpK; ATP synthase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D Spaf_1554 manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:scf00710]
D Spaf_1894 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Spaf_1898 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Spaf_0481 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Spaf_1266 fbp3; fructose-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D Spaf_0937 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Spaf_1438 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Spaf_1908 Pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Spaf_0358 Transaldolase-like protein K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Spaf_1440 Phosphoenolpyruvate carboxylase, putative K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Spaf_1269 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00720 Other carbon fixation pathways [PATH:scf00720]
D Spaf_1269 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Spaf_1440 Phosphoenolpyruvate carboxylase, putative K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Spaf_0163 accA; Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Spaf_0159 accB; Biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Spaf_0161 accC; Biotin carboxylase, putative K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Spaf_0162 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Spaf_1719 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Spaf_1002 L-lactate dehydrogenase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Spaf_0598 folD; methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Spaf_1718 serine cycle enzyme K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D Spaf_1725 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Spaf_0992 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Spaf_0293 ackA; Acetate kinase, putative K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:scf00680]
D Spaf_1033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Spaf_1415 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Spaf_1440 Phosphoenolpyruvate carboxylase, putative K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Spaf_0481 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Spaf_1266 fbp3; fructose-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D Spaf_0782 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Spaf_0293 ackA; Acetate kinase, putative K00925 ackA; acetate kinase [EC:2.7.2.1]
D Spaf_0992 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Spaf_0617 pgaM3; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0248 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0483 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_1418 serB; Phosphoserine phosphatase, putative K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:scf00910]
D Spaf_1801 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Spaf_1891 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Spaf_0715 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D Spaf_1944 cah; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:scf00920]
D Spaf_0918 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D Spaf_0432 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Spaf_0237 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Spaf_1361 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Spaf_1549 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:scf00061]
D Spaf_0163 accA; Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Spaf_0159 accB; Biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Spaf_0161 accC; Biotin carboxylase, putative K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Spaf_0162 accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Spaf_0154 acpP; Acyl carrier protein, putative K02078 acpP; acyl carrier protein
D Spaf_0028 acyl carrier protein K02078 acpP; acyl carrier protein
D Spaf_0156 fabD; acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Spaf_1045 3-oxoacyl-acyl-carrier-protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Spaf_0153 fabH; [3-oxoacyl-acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Spaf_0158 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Spaf_0663 fabG2; 3-oxoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Spaf_0157 fabG; 3-oxoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Spaf_0160 fabZ; (3R)-hydroxymyristoyl ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Spaf_0155 fabK; 2-nitropropane dioxygenase-related dioxygena K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D Spaf_0151 paaG; Enoyl-CoA hydratase/carnithine racemase K18474 fabM; trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:5.3.3.14]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D Spaf_0058 adhE; alcohol dehydrogenase, iron-containing K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Spaf_0170 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:scf00561]
D Spaf_1417 glxK; Glycerate kinase, putative K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Spaf_0359 gldA; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D Spaf_0914 glpK; Glycerol kinase, putative K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Spaf_0027 plsX; Fatty acid/phospholipid synthesis protein plsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Spaf_0967 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Spaf_0703 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Spaf_0855 Sphingosine kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Spaf_1482 glycosyl transferase, group 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D Spaf_1483 glycosyl transferase K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208]
D Spaf_0857 Phosphoglycerol transferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D Spaf_1321 galA; alpha-galactosidase AgaN K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:scf00564]
D Spaf_1952 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Spaf_0967 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Spaf_0703 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Spaf_0855 Sphingosine kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Spaf_1383 glpQ; glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Spaf_0392 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Spaf_2095 pgsA2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Spaf_1082 cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Spaf_2022 phosphatidylserine K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:scf00600]
D Spaf_1988 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Spaf_1774 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Spaf_1321 galA; alpha-galactosidase AgaN K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Spaf_0471 nagZ2; glycosyl hydrolase-related protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Spaf_0259 glycosyl hydrolase-related protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:scf00230]
D Spaf_0675 MutT/nudix family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Spaf_0939 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Spaf_0997 manB; Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Spaf_0020 Ribose-phosphate pyrophosphokinase 1 K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Spaf_0986 prsA2; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Spaf_0031 purF; Glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Spaf_0036 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Spaf_0033 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Spaf_0030 purL; phosphoribosylformylglycinamidine synthase II (FGAM synthetase) K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D Spaf_0032 purM; Phosphoribosylaminoimidazole (AIR) synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Spaf_0039 purK; phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D Spaf_0038 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Spaf_0029 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Spaf_0043 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Spaf_0034 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Spaf_1362 Adenine phosphoribosyltransferase, putative K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Spaf_1712 putative 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Spaf_0942 punA; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Spaf_0945 deoD; Purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Spaf_0012 Hypoxanthine guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Spaf_2101 guaB; inositol-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Spaf_1591 putative deoxyribonucleotide triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Spaf_1024 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D Spaf_1039 guaA2; glutamine amidotransferase protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Spaf_0944 guaA; glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Spaf_1023 guaC; guanosine 5'-monophosphate oxidoreductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D Spaf_0223 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Spaf_0731 nrdA; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Spaf_0730 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Spaf_2020 nrdD; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Spaf_0342 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Spaf_0989 GTP pyrophosphokinase K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D Spaf_1973 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Spaf_1358 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D Spaf_0141 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Spaf_0715 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:scf00240]
D Spaf_1176 carB; Carbamoyl-phosphate synthase, large subunit, glutamine-dependent K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Spaf_1177 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Spaf_1178 pyrB; Aspartate carbamoyltransferase, putative K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Spaf_0958 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Spaf_0952 pyrD; Dihydroorotate dehydrogenase B K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D Spaf_0951 pyrD2; Dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D Spaf_1800 pyrD3; putative dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D Spaf_0954 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Spaf_0953 pyrF; Orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Spaf_1517 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Spaf_0480 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Spaf_0838 Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Spaf_1343 Uridine kinase, putative K00876 udk; uridine kinase [EC:2.7.1.48]
D Spaf_1712 putative 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Spaf_1168 hydrolase, haloacid dehalogenase-like family K25434 pynA; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D Spaf_1546 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Spaf_1180 pyrR; pyrimidine operon transcriptional attenuation protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Spaf_1222 pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D Spaf_1220 Cytidine deaminase, putative K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Spaf_2020 nrdD; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Spaf_0731 nrdA; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Spaf_0730 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Spaf_0842 comEB; DCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Spaf_1536 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Spaf_1947 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Spaf_1029 Thymidine kinase, putative K00857 tdk; thymidine kinase [EC:2.7.1.21]
D Spaf_1148 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Spaf_1632 NADP-dependent L-serine K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:scf00250]
D Spaf_1664 ansA; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Spaf_0564 asnA; asparagine synthetase AsnA K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D Spaf_1202 aspartate aminotransferase K22457 E2.6.1.14; asparagine---oxo-acid transaminase [EC:2.6.1.14]
D Spaf_1661 putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Spaf_1510 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Spaf_1299 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Spaf_1297 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Spaf_1973 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Spaf_0043 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Spaf_1178 pyrB; Aspartate carbamoyltransferase, putative K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Spaf_1801 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Spaf_1891 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Spaf_1176 carB; Carbamoyl-phosphate synthase, large subunit, glutamine-dependent K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Spaf_1177 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Spaf_0373 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Spaf_0031 purF; Glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:scf00260]
D Spaf_0150 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Spaf_1077 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Spaf_1284 thrA; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Spaf_1283 thrB; Homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D Spaf_0100 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Spaf_1033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Spaf_1417 glxK; Glycerate kinase, putative K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Spaf_0617 pgaM3; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0248 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0483 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_1418 serB; Phosphoserine phosphatase, putative K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Spaf_1632 NADP-dependent L-serine K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Spaf_2088 sdaAB; L-serine dehydratase beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Spaf_2089 sdaAA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Spaf_0512 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Spaf_0112 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Spaf_0576 trpB2; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Spaf_0110 trpB; Tryptophan synthase beta chain, putative K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:scf00270]
D Spaf_0432 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Spaf_0237 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Spaf_1548 patB; aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Spaf_1726 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Spaf_0843 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Spaf_0677 mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D Spaf_1340 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D Spaf_1137 putative DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_1188 cytosine methyl transferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_0221 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D Spaf_0150 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Spaf_1077 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Spaf_1284 thrA; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Spaf_1361 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Spaf_1549 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Spaf_0972 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Spaf_0644 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_0976 ldh; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_2088 sdaAB; L-serine dehydratase beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Spaf_2089 sdaAA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00280 Valine, leucine and isoleucine degradation [PATH:scf00280]
D Spaf_0972 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Spaf_1821 pksG; hydroxymethylglutaryl-CoA synthase, putative K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:scf00290]
D Spaf_0512 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Spaf_0964 leuC; isopropylmalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Spaf_0965 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Spaf_0962 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Spaf_0509 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Spaf_0510 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Spaf_0511 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Spaf_0094 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Spaf_1027 ilvD2; Dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Spaf_0972 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Spaf_1661 putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Spaf_0961 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:scf00300]
D Spaf_1284 thrA; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Spaf_0150 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Spaf_1077 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Spaf_1076 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Spaf_1153 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Spaf_1959 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D Spaf_1647 dapE; acetylornithine deacetylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Spaf_1594 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Spaf_0024 patA; Aspartate aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-]
D Spaf_1958 aminoacylase/N-acyl-L-amino acid amidohydrolase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
D Spaf_0687 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00220 Arginine biosynthesis [PATH:scf00220]
D Spaf_0714 arcB; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Spaf_1299 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Spaf_1297 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Spaf_0712 arcA; Arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D Spaf_1891 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Spaf_1176 carB; Carbamoyl-phosphate synthase, large subunit, glutamine-dependent K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Spaf_1177 carA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Spaf_0715 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D Spaf_1801 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Spaf_1661 putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
C 00330 Arginine and proline metabolism [PATH:scf00330]
D Spaf_1245 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Spaf_1247 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Spaf_1246 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00340 Histidine metabolism [PATH:scf00340]
D Spaf_1722 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D Spaf_1716 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D Spaf_1715 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D Spaf_1723 hutG; formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
D Spaf_1717 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2]
D Spaf_1344 frdA; putative oxidoreductase K17363 urdA; urocanate reductase [EC:1.3.99.33]
C 00350 Tyrosine metabolism
D Spaf_0058 adhE; alcohol dehydrogenase, iron-containing K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Spaf_0170 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00360 Phenylalanine metabolism
C 00380 Tryptophan metabolism
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:scf00400]
D Spaf_1668 aroF; putative phospho-2-dehydro-3-deoxyheptonate aldolase 1 K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Spaf_0861 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Spaf_0859 aroD; 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D Spaf_0868 aroD2; 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D Spaf_0871 aroK; Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Spaf_0870 aroA1; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Spaf_0862 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Spaf_0105 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Spaf_0106 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Spaf_0107 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Spaf_0109 trpF; N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Spaf_0108 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Spaf_0112 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Spaf_0576 trpB2; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Spaf_0110 trpB; Tryptophan synthase beta chain, putative K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Spaf_0927 aroA2; chorismate mutase K04516 AROA1; chorismate mutase [EC:5.4.99.5]
D Spaf_0863 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Spaf_0872 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism [PATH:scf00430]
D Spaf_1510 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Spaf_0992 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Spaf_0293 ackA; Acetate kinase, putative K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:scf00450]
D Spaf_1549 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D Spaf_1548 patB; aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Spaf_1726 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D Spaf_0525 sufS; aminotransferase, class-V K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D Spaf_0208 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Spaf_0618 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:scf00460]
D Spaf_1664 ansA; asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Spaf_0564 asnA; asparagine synthetase AsnA K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D Spaf_1033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:scf00470]
D Spaf_1666 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Spaf_0686 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Spaf_2065 dltC2; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D Spaf_2063 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D Spaf_1592 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Spaf_0583 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Spaf_1594 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:scf00480]
D Spaf_0806 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Spaf_1452 glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D Spaf_1618 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Spaf_1471 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Spaf_1379 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:scf00511]
D Spaf_1988 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Spaf_1774 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Spaf_0471 nagZ2; glycosyl hydrolase-related protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Spaf_0259 glycosyl hydrolase-related protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Spaf_0257 sugar hydrolase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D Spaf_0113 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Spaf_1987 hypothetical protein K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:scf00542]
D Spaf_0522 Glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:scf00541]
D Spaf_1954 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Spaf_1312 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Spaf_1352 cps19fN; Glucose-1-phosphate thymidylyltransferase, long form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Spaf_1350 cps19fL; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Spaf_1351 cps19fO; dTDP-4-keto-L-rhamnose reductase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Spaf_0821 cps19fM; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Spaf_1675 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Spaf_0674 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Spaf_2005 cpsFK; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Spaf_0279 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 00550 Peptidoglycan biosynthesis [PATH:scf00550]
D Spaf_0749 murA; UDP-N-acetylglucosamine-like protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Spaf_0844 murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Spaf_1281 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Spaf_1606 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Spaf_0583 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Spaf_0686 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Spaf_0687 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Spaf_1505 dgkA; diacylglycerol kinase K00887 dgkA; undecaprenol kinase [EC:2.7.1.66]
D Spaf_0391 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Spaf_0519 bacA; bacitracin resistance protein/undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Spaf_1579 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Spaf_0203 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Spaf_0584 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Spaf_0214 pbp1A; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Spaf_1999 penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D Spaf_0528 dacC2; DD-carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Spaf_0463 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_1227 succinyl-diaminopimelate desuccinylase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_1551 murE2; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase K05362 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [EC:6.3.2.7]
D Spaf_0760 murE; Mur ligase family protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D Spaf_0759 cobyric acid synthase, putative K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D Spaf_1436 peptidoglycan branched peptide synthesis protein K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10]
D Spaf_1437 beta-lactam resistance factor K12554 murN; alanine adding enzyme [EC:2.3.2.-]
D Spaf_0276 Membrane carboxypeptidase K03693 pbp1b; penicillin-binding protein 1B
D Spaf_0684 pbpB; Penicillin-binding protein 2B K00687 pbp2B; penicillin-binding protein 2B
D Spaf_0202 pbpX; Penicillin-binding protein 2X K12556 pbp2X; penicillin-binding protein 2X
C 00552 Teichoic acid biosynthesis [PATH:scf00552]
D Spaf_0519 bacA; bacitracin resistance protein/undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Spaf_1579 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Spaf_0522 Glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Spaf_2011 cpsFF; UDP-N-acetyl-D-mannosamine transferase wchO K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D Spaf_2065 dltC2; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D Spaf_2063 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D Spaf_2064 dltB; integral membrane protein K03739 dltB; membrane protein involved in D-alanine export
D Spaf_2062 dltD; dltD protein K03740 dltD; D-alanine transfer protein
D Spaf_0873 Transcriptional attenuator LytR K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Spaf_0176 Transcriptional attenuator LytR K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Spaf_2016 cpsA; Integral membrane regulatory protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Spaf_0857 Phosphoglycerol transferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D Spaf_1482 glycosyl transferase, group 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D Spaf_2010 cpsFG; putative LicD-family phosphotransferase wchP K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]
D Spaf_1925 gtf1; glycosyltransferase
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:scf00543]
D Spaf_0522 Glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Spaf_0432 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:scf00730]
D Spaf_0985 iscS; Pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Spaf_1271 iscS2; Aminotransferase, class-V, putative K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Spaf_1270 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Spaf_1909 rsgA; putative GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Spaf_1907 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D Spaf_0141 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:scf00740]
D Spaf_0172 Cof family protein K21064 ycsE; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104]
D Spaf_0795 putative FAD synthase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Spaf_0675 MutT/nudix family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:scf00750]
D Spaf_0473 thiD; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D Spaf_0100 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:scf00760]
D Spaf_0209 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Spaf_0942 punA; purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Spaf_0945 deoD; Purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Spaf_1980 nadR; ATPase/kinase, putative K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D Spaf_1712 putative 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Spaf_0551 nadD; nicotinate nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Spaf_0210 NAD+ synthase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D Spaf_0947 NAD-dependent deacetylase, putative K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Spaf_0990 Inorganic polyphosphate kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:scf00770]
D Spaf_0509 ilvB; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Spaf_0510 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Spaf_0511 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Spaf_0094 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Spaf_1027 ilvD2; Dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Spaf_1224 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D Spaf_1001 phosphopantothenate--cysteine ligase K21977 coaB; phosphopantothenate---cysteine ligase (CTP) [EC:6.3.2.5]
D Spaf_1000 putative Dfp-like protein K01598 PPCDC; phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36]
D Spaf_0566 coaD; Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Spaf_1502 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Spaf_1667 acpS; 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Spaf_0972 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:scf00780]
D Spaf_0158 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Spaf_0663 fabG2; 3-oxoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Spaf_0157 fabG; 3-oxoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Spaf_0160 fabZ; (3R)-hydroxymyristoyl ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Spaf_1324 birA; biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:scf00785]
D Spaf_1059 lplA; Lipoate protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Spaf_1063 pdhA; Acetoin dehydrogenase, E1 component, alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Spaf_1062 pdhB; acetoin dehydrogenase, E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Spaf_1061 pdhC; dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00790 Folate biosynthesis [PATH:scf00790]
D Spaf_0297 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Spaf_0298 folK; Folate synthesis protein K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3]
D Spaf_0295 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Spaf_1147 folA; Dihydrofolate reductase, putative K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Spaf_2025 dihydrofolate:folylpolyglutamate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Spaf_0296 Dihydrofolate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Spaf_1765 pabB; chorismate binding enzyme K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
C 00670 One carbon pool by folate [PATH:scf00670]
D Spaf_1147 folA; Dihydrofolate reductase, putative K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Spaf_1719 formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Spaf_1002 L-lactate dehydrogenase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Spaf_0598 folD; methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Spaf_1718 serine cycle enzyme K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D Spaf_1033 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Spaf_0033 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Spaf_0034 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Spaf_1717 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2]
D Spaf_0226 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Spaf_1148 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Spaf_1725 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Spaf_1957 5-formyltetrahydrofolate cyclo-ligase family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:scf00860]
D Spaf_0375 hypothetical protein K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Spaf_1748 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:scf00130]
D Spaf_0267 putative oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Spaf_1190 NADPH-dependent FMN reductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Spaf_0367 hypothetical protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:scf00900]
D Spaf_1821 pksG; hydroxymethylglutaryl-CoA synthase, putative K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D Spaf_1822 hmg1; hydroxymethylglutaryl-CoA reductase, degradative K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88]
D Spaf_1828 mvaK2; mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D Spaf_1826 mvaK1; phosphomevalonate kinase K00938 E2.7.4.2; phosphomevalonate kinase [EC:2.7.4.2]
D Spaf_1827 mvaD; diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33]
D Spaf_1825 isopentenyl pyrophosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D Spaf_0609 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Spaf_0391 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:scf00523]
D Spaf_1352 cps19fN; Glucose-1-phosphate thymidylyltransferase, long form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Spaf_1350 cps19fL; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Spaf_1351 cps19fO; dTDP-4-keto-L-rhamnose reductase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Spaf_0821 cps19fM; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D Spaf_1350 cps19fL; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:scf00946]
D Spaf_1778 alfa-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D Spaf_1050 acetyl xylan esterase K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41]
C 00332 Carbapenem biosynthesis [PATH:scf00332]
D Spaf_1247 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Spaf_1246 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:scf00261]
D Spaf_0150 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Spaf_1077 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Spaf_1076 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Spaf_1153 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:scf00521]
D Spaf_1149 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D Spaf_0997 manB; Phosphomannomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Spaf_0798 suhB; Mg++ dependent inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Spaf_1352 cps19fN; Glucose-1-phosphate thymidylyltransferase, long form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Spaf_1350 cps19fL; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Spaf_1351 cps19fO; dTDP-4-keto-L-rhamnose reductase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Spaf_0821 cps19fM; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Spaf_1149 glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:scf00525]
D Spaf_1352 cps19fN; Glucose-1-phosphate thymidylyltransferase, long form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Spaf_1350 cps19fL; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis
D Spaf_0863 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Spaf_0105 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Spaf_0106 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Spaf_0156 fabD; acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Spaf_0663 fabG2; 3-oxoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Spaf_0157 fabG; 3-oxoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Spaf_0154 acpP; Acyl carrier protein, putative K02078 acpP; acyl carrier protein
D Spaf_0028 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D Spaf_0843 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D Spaf_1028 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00627 Aminobenzoate degradation
D Spaf_1599 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:scf00625]
D Spaf_0170 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Spaf_0058 adhE; alcohol dehydrogenase, iron-containing K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D Spaf_1028 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D Spaf_1028 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:scf00626]
D Spaf_0170 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D Spaf_0058 adhE; alcohol dehydrogenase, iron-containing K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:scf03020]
D Spaf_0277 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Spaf_0278 rpoC; DNA-directed RNA polymerase subunit beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Spaf_0145 rpoA; DNA-directed RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Spaf_0224 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Spaf_0478 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:scf03010]
D Spaf_0974 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Spaf_1994 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Spaf_0125 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Spaf_2075 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Spaf_0137 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Spaf_1704 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Spaf_1900 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Spaf_0134 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Spaf_0446 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Spaf_0118 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Spaf_0144 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Spaf_1901 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Spaf_0143 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Spaf_0133 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Spaf_0421 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Spaf_1167 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Spaf_0128 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Spaf_1701 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Spaf_0123 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Spaf_1225 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Spaf_0773 rpsU; 30S Ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Spaf_1518 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Spaf_0122 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Spaf_0119 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Spaf_0120 rplD; Ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D Spaf_0132 rplE; Ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Spaf_0135 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Spaf_1140 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Spaf_2082 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Spaf_1141 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Spaf_1520 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Spaf_0445 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Spaf_0129 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Spaf_0139 rplO; Ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Spaf_0126 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Spaf_0146 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Spaf_0136 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Spaf_0929 rplS; 50S ribosomal protein L19, putative K02884 RP-L19; large subunit ribosomal protein L19
D Spaf_0841 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Spaf_1265 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Spaf_0124 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Spaf_0121 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Spaf_0131 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Spaf_1263 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Spaf_0499 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Spaf_0127 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Spaf_0138 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Spaf_0916 rpmE; Ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Spaf_0091 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Spaf_0090 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Spaf_1916 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Spaf_0840 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Spaf_r01 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r03 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r04 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r02 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r05 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r07 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r08 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r06 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r09 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r10 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r11 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r12 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:scf00970]
D Spaf_t02 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Spaf_t23 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Spaf_t39 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Spaf_t21 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Spaf_t10 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t11 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t47 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t48 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t61 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t51 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t54 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t22 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Spaf_t59 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Spaf_t04 trnD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Spaf_t41 trnD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Spaf_t58 trnC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Spaf_t34 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Spaf_t53 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Spaf_t01 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Spaf_t60 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Spaf_t27 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Spaf_t08 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Spaf_t45 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Spaf_t18 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Spaf_t25 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Spaf_t33 trnH; tRNA-His K14226 tRNA-His; tRNA His
D Spaf_t19 trnI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Spaf_t26 trnI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Spaf_t35 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t46 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t09 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t06 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t43 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t56 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t37 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t36 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Spaf_t05 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Spaf_t42 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Spaf_t16 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Spaf_t29 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Spaf_t14 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Spaf_t13 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Spaf_t17 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Spaf_t30 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Spaf_t12 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Spaf_t49 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Spaf_t15 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t20 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t50 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t57 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t28 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t07 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Spaf_t44 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Spaf_t55 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Spaf_t38 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Spaf_t32 trnW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Spaf_t52 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Spaf_t31 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Spaf_t03 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Spaf_t40 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Spaf_t24 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Spaf_1936 gltX1; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D Spaf_1657 gatA2; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Spaf_1656 gatB2; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Spaf_1658 gatC2; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Spaf_0729 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Spaf_2060 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Spaf_1201 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Spaf_0195 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Spaf_0196 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Spaf_1481 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Spaf_0164 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Spaf_0435 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Spaf_0618 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Spaf_0226 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Spaf_0546 valRS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Spaf_0363 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Spaf_0592 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Spaf_1447 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Spaf_2041 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Spaf_0394 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Spaf_0099 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Spaf_1406 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Spaf_1404 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Spaf_0275 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Spaf_2102 tryptophanyl-tRNA synthetase II K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:scf03060]
D Spaf_1930 secY2; preprotein translocase subunit SecY2 K03076 secY; preprotein translocase subunit SecY
D Spaf_0140 secY1; preprotein translocase subunit SecY1 K03076 secY; preprotein translocase subunit SecY
D Spaf_1997 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D Spaf_1500 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D Spaf_0390 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D Spaf_1600 OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Spaf_1919 membrane protein (preprotein translocase) oxaA 1 precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Spaf_1670 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Spaf_1926 secA2; preprotein translocase subunit SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Spaf_1047 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Spaf_1472 ftsY; putative signal recognition particle 54 K03110 ftsY; fused signal recognition particle receptor
D Spaf_1020 TatA, sec-independent protein secretion pathway component K03116 tatA; sec-independent protein translocase protein TatA
D Spaf_1019 tatC; Sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
D Spaf_0784 lepB1; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Spaf_1814 lepB2; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Spaf_1249 lspA; Lipoprotein signal peptidase, putative K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:scf04122]
D Spaf_0985 iscS; Pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Spaf_1271 iscS2; Aminotransferase, class-V, putative K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Spaf_2086 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Spaf_1270 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:scf03018]
D Spaf_1415 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Spaf_0431 pnpT; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Spaf_1499 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Spaf_0698 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Spaf_0222 Metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Spaf_1890 metallo-beta-lactamase superfamily hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Spaf_1938 metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Spaf_0782 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Spaf_0467 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Spaf_0316 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:scf03030]
D Spaf_1835 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Spaf_0781 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Spaf_0407 polC; Gram-positive type DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Spaf_1339 dnaX; DNA-directed DNA polymerase III chain K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Spaf_1535 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Spaf_0707 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Spaf_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Spaf_2081 dnaB2; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Spaf_0775 dnaG; DNA primase (bacterial type) K02316 dnaG; DNA primase [EC:2.7.7.101]
D Spaf_1703 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_0304 Single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_1073 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Spaf_1813 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D Spaf_0114 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Spaf_0854 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:scf03410]
D Spaf_0678 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Spaf_0956 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Spaf_0995 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Spaf_1503 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Spaf_2033 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D Spaf_0681 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Spaf_0114 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Spaf_1365 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Spaf_0854 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:scf03420]
D Spaf_0006 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Spaf_1691 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Spaf_1192 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D Spaf_1237 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Spaf_0789 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Spaf_0114 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Spaf_0854 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:scf03430]
D Spaf_2039 mutS3; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D Spaf_1810 mutS2; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D Spaf_2035 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Spaf_0789 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Spaf_0607 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Spaf_0608 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Spaf_1365 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Spaf_1703 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_0304 Single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_0781 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Spaf_0407 polC; Gram-positive type DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Spaf_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Spaf_1339 dnaX; DNA-directed DNA polymerase III chain K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Spaf_0707 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Spaf_1535 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Spaf_1835 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Spaf_0854 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:scf03440]
D Spaf_1365 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Spaf_1703 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_0304 Single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_2100 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
D Spaf_0026 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
D Spaf_0685 recR; Recombinational DNA repair protein K06187 recR; recombination protein RecR
D Spaf_2031 recA; recA protein K03553 recA; recombination protein RecA
D Spaf_0114 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Spaf_2034 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Spaf_0053 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Spaf_1665 recG; ATP-dependent DNA helicase recG, transcription-repair coupling factor K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Spaf_1815 recD; helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Spaf_0781 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Spaf_0407 polC; Gram-positive type DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Spaf_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Spaf_1339 dnaX; DNA-directed DNA polymerase III chain K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Spaf_0707 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Spaf_1535 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Spaf_1835 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Spaf_0225 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:scf03250]
D Spaf_1528 ppiA; peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:scf02010]
D Spaf_1277 potD; putrescine ABC transporter K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Spaf_1278 potC; ABC transporter membrane-spanning permease-spermidine K11070 potC; spermidine/putrescine transport system permease protein
D Spaf_1279 potB; ABC transporter membrane-spanning permease-spermidine K11071 potB; spermidine/putrescine transport system permease protein
D Spaf_1280 potA; spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Spaf_0369 ABC-type choline transporter, membrane-spanning permease K05845 opuC; osmoprotectant transport system substrate-binding protein
D Spaf_0368 choline transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Spaf_0438 msmX; ABC transporter ATP-binding protein-multiple sugar transport K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Spaf_2050 maltose/maltodextrin-binding protein precursor K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Spaf_2052 malF; maltodextrin transport system permease protein malC K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Spaf_2054 malG; ABC-type maltose transport system, permease component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Spaf_1320 msmE; ABC transporter, sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Spaf_1319 msmF; ABC transporter membrane-spanning permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Spaf_1318 msmG; sugar ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Spaf_0262 ABC transporter solute binding protein - sugar transport K17318 lplA; putative aldouronate transport system substrate-binding protein
D Spaf_1332 putative sugar ABC transporter substrate-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Spaf_0260 ABC transporter, permease protein K17319 lplB; putative aldouronate transport system permease protein
D Spaf_1334 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D Spaf_0261 ABC transporter membrane spanning permease - sugar transport K17320 lplC; putative aldouronate transport system permease protein
D Spaf_1333 ABC-type sugar transport system, permease component K17320 lplC; putative aldouronate transport system permease protein
D Spaf_1219 bmpA; Lipoprotein, putative K07335 bmpA; basic membrane protein A and related proteins
D Spaf_1217 Sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D Spaf_1216 Sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D Spaf_1218 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Spaf_0305 rbsB; Periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D Spaf_0800 pstS; ABC-type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein
D Spaf_0801 pstC; ABC transporter membrane-spanning permease-phosphate transport K02037 pstC; phosphate transport system permease protein
D Spaf_0802 pstA; ABC transporter membrane-spanning permease-phosphate transport K02038 pstA; phosphate transport system permease protein
D Spaf_0803 pstB; ABC transporter ATP-binding protein - phosphate transport K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Spaf_0804 pstB2; Phosphate import ATP-binding protein pstB 1 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Spaf_1195 glutamine ABC transporter membrane protein K10036 glnH; glutamine transport system substrate-binding protein
D Spaf_1196 excinuclease ABC subunit B K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D Spaf_1649 L-cystine ABC transporter, substrate-binding component K02424 tcyA; L-cystine transport system substrate-binding protein
D Spaf_0205 ABC-type arginine/histidine transport system, permease component K10009 tcyB; L-cystine transport system permease protein
D Spaf_0206 ABC-type polar amino acid transport system, ATPase component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D Spaf_0378 Amino acid ABC transporter, periplasmic amino acid-binding protein K16957 tcyK; L-cystine transport system substrate-binding protein
D Spaf_0379 ABC-type arginine/histidine transporter, permease protein K16958 tcyL; L-cystine transport system permease protein
D Spaf_0380 ABC-type arginine/histidine transporter, permease protein K16959 tcyM; L-cystine transport system permease protein
D Spaf_0381 Amino acid ABC transporter, ATP-binding protein K16960 tcyN; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D Spaf_0516 Amino acid ABC transporter, amino acid-binding protein/permease protein K17073 lysX1; putative lysine transport system substrate-binding protein
D Spaf_0515 Amino acid ABC transporter, ATP-binding protein K17076 lysY; putative lysine transport system ATP-binding protein
D Spaf_1543 livK; branched-chain amino acid transport protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Spaf_1542 livH; ABC transporter membrane-spanning permease-branched chain amino acid transport K01997 livH; branched-chain amino acid transport system permease protein
D Spaf_1541 livM; branched-chain amino acid transport system permease protein K01998 livM; branched-chain amino acid transport system permease protein
D Spaf_1540 livG; branched-chain amino acid transport protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Spaf_1539 livF; branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Spaf_1648 metQ; putative lipoprotein transporter K02073 metQ; D-methionine transport system substrate-binding protein
D Spaf_1645 metI; putative ABC transporter system permease protein K02072 metI; D-methionine transport system permease protein
D Spaf_1646 metN; ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D Spaf_0362 aliA; AliA protein K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_1301 Oligopeptide-binding lipoprotein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0657 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0679 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0529 ABC-type oligopeptide transporter, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0530 Oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D Spaf_0531 Oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D Spaf_0532 Oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Spaf_0533 Oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D Spaf_0622 Zn-porter lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D Spaf_0252 adcA; Metal-binding (Zn) permease, putative K09815 znuA; zinc transport system substrate-binding protein
D Spaf_0251 adcB; ABC transporter (permease), Zn porter K09816 znuB; zinc transport system permease protein
D Spaf_0250 adcC; ABC transporter, Zn porter, putative K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Spaf_0347 fimA; zinc/manganese ABC transporter binding protein, FimA K19971 psaA; manganese/zinc transport system substrate-binding protein
D Spaf_0348 fimB; zinc/manganese ABC transporter membrane protein,FimB K19972 psaC; manganese/zinc transport system permease protein
D Spaf_0349 fimC; zinc/manganese ABC transporter ATP binding protein, FimC K10830 psaB; manganese/zinc transport system ATP-binding protein [EC:7.2.2.5]
D Spaf_0812 bioY; Biotin synthase K03523 bioY; biotin transport system substrate-specific component
D Spaf_1633 cbiQ; cobalt transport family protein K16785 ecfT; energy-coupling factor transport system permease protein
D Spaf_1761 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein
D Spaf_2092 cbiQ2; cobalt transport protein cbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D Spaf_1760 ABC transporter ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Spaf_2094 cbiO4; ABC transporter ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Spaf_1759 cbiO2; cobalt transport ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Spaf_2093 cbiO3; cobalt transporter ATP-binding subunit K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Spaf_0272 putative ABC transporter, integral membrane protein K11051 cylB; multidrug/hemolysin transport system permease protein
D Spaf_0271 ABC-type multidrug transport system, ATPase component K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D Spaf_1110 sboE; SboE K20460 nukE; lantibiotic transport system permease protein
D Spaf_1109 sboG; SboG K20461 nukG; lantibiotic transport system permease protein
D Spaf_1111 sboF; SboF K20459 nukF; lantibiotic transport system ATP-binding protein
D Spaf_0629 ABC transporter, permease protein K19084 braE; bacitracin transport system permease protein
D Spaf_0656 ABC-type bacitracin resistance protein A, permease component K19084 braE; bacitracin transport system permease protein
D Spaf_0628 ABC transporter ATP binding protein K19083 braD; bacitracin transport system ATP-binding protein
D Spaf_0655 ABC transporter ATP binding protein K19083 braD; bacitracin transport system ATP-binding protein
D Spaf_1428 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D Spaf_1429 ftsE; Cell division protein FtsE, putative K09812 ftsE; cell division transport system ATP-binding protein
D Spaf_1212 Multidrug ABC transporter, ATPase and permease component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1211 ABC-type multidrug transport system, ATPase and permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1508 ABC-type multidrug transport system, ATPase and permease component K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein
D Spaf_1507 msbA; putative ABC transporter K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein
D Spaf_1086 membrane-spanning protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1382 ABC transporter-like protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1198 Multidrug ABC transporter, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1084 ABC transporter ATP binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1197 Multidrug ABC transporter, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1381 ABC transporter-like protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:scf02060]
D Spaf_0734 ptsI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Spaf_0733 pstH; phosphoenolpyruvate:sugar phosphotransferase system HPr K02784 ptsH; phosphocarrier protein HPr
D Spaf_1615 ptsG; PTS system, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D Spaf_1682 scrA; phosphotransferase system IIC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D Spaf_1559 treB; pts system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D Spaf_1253 lacF2; cellobiose-specific PTS system IIA component K02786 lacF; lactose PTS system EIIA component [EC:2.7.1.207]
D Spaf_1252 lacE; Phosphotransferase system lactose-specific component IIBC K02788 lacE; lactose PTS system EIICB component [EC:2.7.1.207]
D Spaf_0354 celC; putative PTS system, enzyme III K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Spaf_0355 celA; Phosphotransferase system (PTS), cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Spaf_0356 celB; PTS lactose/cellobiose IIC component K02761 celB; cellobiose PTS system EIIC component
D Spaf_0651 cellobiose PTS system component IIC K02761 celB; cellobiose PTS system EIIC component
D Spaf_0050 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Spaf_0169 manL; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D Spaf_0047 PTS system, IIC component K02795 manY; mannose PTS system EIIC component
D Spaf_0168 manM; Phosphotransferase system, mannose-specific EIIC K02795 manY; mannose PTS system EIIC component
D Spaf_0311 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D Spaf_0048 Phosphotransferase system sugar-specific EIID component K02796 manZ; mannose PTS system EIID component
D Spaf_0167 manN; Phosphotransferase system, mannose-specific EIID K02796 manZ; mannose PTS system EIID component
D Spaf_0309 PTS system, sugar-specific enzyme IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D Spaf_1261 gatA; PTS system enzyme IIBC component K20112 gatA; galactose PTS system EIIA component [EC:2.7.1.204]
D Spaf_1260 gatB; PTS system IIB component K20113 gatB; galactose PTS system EIIB component [EC:2.7.1.204]
D Spaf_1259 gatC; PTS system, IIC component K20114 gatC; galactose PTS system EIIC component
D Spaf_1158 fruA; Phosphotransferase system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D Spaf_1160 fruK; 1-phosphofructokinase, putative K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:scf03070]
D Spaf_1997 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D Spaf_1500 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D Spaf_1930 secY2; preprotein translocase subunit SecY2 K03076 secY; preprotein translocase subunit SecY
D Spaf_0140 secY1; preprotein translocase subunit SecY1 K03076 secY; preprotein translocase subunit SecY
D Spaf_0390 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D Spaf_1600 OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Spaf_1919 membrane protein (preprotein translocase) oxaA 1 precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Spaf_1670 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Spaf_1926 secA2; preprotein translocase subunit SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Spaf_1472 ftsY; putative signal recognition particle 54 K03110 ftsY; fused signal recognition particle receptor
D Spaf_1047 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Spaf_1020 TatA, sec-independent protein secretion pathway component K03116 tatA; sec-independent protein translocase protein TatA
D Spaf_1019 tatC; Sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
D Spaf_1129 traG; TraG/TraD family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:scf02020]
D Spaf_0800 pstS; ABC-type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein
D Spaf_2108 degP; DegP protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Spaf_1479 vicK; histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D Spaf_1480 vicR; response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D Spaf_0001 dnaA; Chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D Spaf_0629 ABC transporter, permease protein K19084 braE; bacitracin transport system permease protein
D Spaf_0656 ABC-type bacitracin resistance protein A, permease component K19084 braE; bacitracin transport system permease protein
D Spaf_0628 ABC transporter ATP binding protein K19083 braD; bacitracin transport system ATP-binding protein
D Spaf_0655 ABC transporter ATP binding protein K19083 braD; bacitracin transport system ATP-binding protein
D Spaf_0626 D-tyrosyl-tRNA deacylase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D Spaf_0625 response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D Spaf_2065 dltC2; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D Spaf_2064 dltB; integral membrane protein K03739 dltB; membrane protein involved in D-alanine export
D Spaf_2063 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D Spaf_2062 dltD; dltD protein K03740 dltD; D-alanine transfer protein
D Spaf_0815 ciaH; Sensor protein ciaH K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D Spaf_0814 Response regulator, transcriptional regulatory protein K14983 ciaR; two-component system, OmpR family, response regulator CiaR
D Spaf_0463 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_1227 succinyl-diaminopimelate desuccinylase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_1097 nisK; NisK K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Spaf_1119 nisK2; NisK K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Spaf_1096 nisR; NisR K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D Spaf_1120 nisR2; NisR K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D Spaf_0318 comD; histidine protein kinase ComD K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D Spaf_0317 comE; putative response regulator of the competence regulon, ComE K07707 agrA; two-component system, LytTR family, response regulator AgrA
D Spaf_2106 agrC2; histidine protein kinase ComD K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D Spaf_2105 two-component system LytR/AlgR family transcriptional regulator K12295 comE; two-component system, LytTR family, response regulator ComE
D Spaf_0014 comX1; transcriptional regulator of competence-specific protein K12296 comX1_2; competence protein ComX
D Spaf_0010 Beta-lactamase class A K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D Spaf_0507 desK; sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Spaf_0508 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR
D Spaf_0233 Histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D Spaf_0234 Two-component response transcriptional regulator K11618 liaR; two-component system, NarL family, response regulator LiaR
D Spaf_1891 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Spaf_0573 Two-component sensor kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Spaf_0264 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Spaf_1335 putative histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Spaf_1337 two-component response regulator K07720 yesN; two-component system, response regulator YesN
D Spaf_0265 DNA-binding response regulator K07720 yesN; two-component system, response regulator YesN
D Spaf_0572 Two-component response transcriptional regulator K07720 yesN; two-component system, response regulator YesN
D Spaf_0055 nicotinate-nucleotide pyrophosphorylase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Spaf_2005 cpsFK; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Spaf_0279 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:scf02024]
D Spaf_0221 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D Spaf_0105 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Spaf_0106 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Spaf_1668 aroF; putative phospho-2-dehydro-3-deoxyheptonate aldolase 1 K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Spaf_1543 livK; branched-chain amino acid transport protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Spaf_1542 livH; ABC transporter membrane-spanning permease-branched chain amino acid transport K01997 livH; branched-chain amino acid transport system permease protein
D Spaf_1541 livM; branched-chain amino acid transport system permease protein K01998 livM; branched-chain amino acid transport system permease protein
D Spaf_1540 livG; branched-chain amino acid transport protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Spaf_1539 livF; branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Spaf_0318 comD; histidine protein kinase ComD K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D Spaf_0317 comE; putative response regulator of the competence regulon, ComE K07707 agrA; two-component system, LytTR family, response regulator AgrA
D Spaf_2106 agrC2; histidine protein kinase ComD K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D Spaf_2105 two-component system LytR/AlgR family transcriptional regulator K12295 comE; two-component system, LytTR family, response regulator ComE
D Spaf_0815 ciaH; Sensor protein ciaH K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D Spaf_0814 Response regulator, transcriptional regulatory protein K14983 ciaR; two-component system, OmpR family, response regulator CiaR
D Spaf_0362 aliA; AliA protein K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_1301 Oligopeptide-binding lipoprotein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0657 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0679 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0529 ABC-type oligopeptide transporter, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0530 Oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D Spaf_0531 Oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D Spaf_0532 Oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Spaf_0533 Oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D Spaf_0014 comX1; transcriptional regulator of competence-specific protein K12296 comX1_2; competence protein ComX
D Spaf_0755 mutR; transcriptional regulator MutR K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator
D Spaf_1873 mutR2; MutR family transcriptional regulator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D Spaf_1622 rggD; putative transcriptional regulator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D Spaf_1255 lacD; Tagatose-1,6-bisphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D Spaf_1600 OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Spaf_1919 membrane protein (preprotein translocase) oxaA 1 precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Spaf_1997 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D Spaf_1500 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D Spaf_1930 secY2; preprotein translocase subunit SecY2 K03076 secY; preprotein translocase subunit SecY
D Spaf_0140 secY1; preprotein translocase subunit SecY1 K03076 secY; preprotein translocase subunit SecY
D Spaf_0390 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D Spaf_1670 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Spaf_1926 secA2; preprotein translocase subunit SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Spaf_1472 ftsY; putative signal recognition particle 54 K03110 ftsY; fused signal recognition particle receptor
D Spaf_1047 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Spaf_1097 nisK; NisK K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Spaf_1119 nisK2; NisK K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Spaf_1096 nisR; NisR K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D Spaf_1120 nisR2; NisR K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D Spaf_0305 rbsB; Periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly [PATH:scf02040]
D Spaf_1649 L-cystine ABC transporter, substrate-binding component K02424 tcyA; L-cystine transport system substrate-binding protein
D Spaf_0777 rpoD; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Spaf_1415 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D Spaf_2046 gbpC; glucan-binding protein C K13732 fnbA; fibronectin-binding protein A
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:scf01501]
D Spaf_1777 beta-hexosamidase a, glycoside hydrolase family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Spaf_1316 nagZ3; Beta-hexosamidase A K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Spaf_0010 Beta-lactamase class A K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D Spaf_0362 aliA; AliA protein K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_1301 Oligopeptide-binding lipoprotein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0657 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0679 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0529 ABC-type oligopeptide transporter, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0530 Oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D Spaf_0531 Oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D Spaf_0532 Oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Spaf_0533 Oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D Spaf_0214 pbp1A; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Spaf_0276 Membrane carboxypeptidase K03693 pbp1b; penicillin-binding protein 1B
D Spaf_1999 penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D Spaf_0684 pbpB; Penicillin-binding protein 2B K00687 pbp2B; penicillin-binding protein 2B
D Spaf_0202 pbpX; Penicillin-binding protein 2X K12556 pbp2X; penicillin-binding protein 2X
C 01502 Vancomycin resistance [PATH:scf01502]
D Spaf_0686 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Spaf_1666 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Spaf_0687 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Spaf_0203 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Spaf_0584 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Spaf_0463 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_1227 succinyl-diaminopimelate desuccinylase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:scf01503]
D Spaf_2108 degP; DegP protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Spaf_1528 ppiA; peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Spaf_2065 dltC2; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D Spaf_2064 dltB; integral membrane protein K03739 dltB; membrane protein involved in D-alanine export
D Spaf_2063 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D Spaf_2062 dltD; dltD protein K03740 dltD; D-alanine transfer protein
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:scf01000]
C 01001 Protein kinases [BR:scf01001]
D Spaf_0042 kinase-like Serine/threonine protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Spaf_0229 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Spaf_2013 cpsFD; putative autophosphorylating protein tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Spaf_1479 vicK; histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D Spaf_0626 D-tyrosyl-tRNA deacylase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D Spaf_0815 ciaH; Sensor protein ciaH K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D Spaf_1097 nisK; NisK K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Spaf_1119 nisK2; NisK K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Spaf_0507 desK; sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Spaf_0233 Histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D Spaf_0318 comD; histidine protein kinase ComD K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D Spaf_2106 agrC2; histidine protein kinase ComD K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D Spaf_0573 Two-component sensor kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Spaf_0264 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Spaf_1335 putative histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:scf01009]
D Spaf_0782 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Spaf_0228 Phosphoprotein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Spaf_1418 serB; Phosphoserine phosphatase, putative K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:scf01002]
D Spaf_1249 lspA; Lipoprotein signal peptidase, putative K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Spaf_0212 pepC; aminopeptidase C K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D Spaf_1039 guaA2; glutamine amidotransferase protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Spaf_0944 guaA; glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Spaf_1951 glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase
D Spaf_0371 redox-sensing transcriptional repressor Rex K07010 K07010; putative glutamine amidotransferase
D Spaf_0035 Secreted protein, putative function in cell-wall metabolism (amidase) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Spaf_0018 gbpB; Secreted antigen GbpB/Peptidoglycan hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Spaf_0031 purF; Glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Spaf_0373 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Spaf_1422 thiJ; 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D Spaf_0978 srtA; Sortase, putative K07284 srtA; sortase A [EC:3.4.22.70]
D Spaf_0023 srtB; Surface protein cell wall anchor, sortase_B family K08600 srtB; sortase B [EC:3.4.22.71]
D Spaf_1809 pepD; dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D Spaf_1824 dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D Spaf_1955 amylase-binding protein B K08659 pepDA; dipeptidase [EC:3.4.-.-]
D Spaf_1497 abpB-like dipeptidase lipoprotein K08659 pepDA; dipeptidase [EC:3.4.-.-]
D Spaf_1134 putative CAAX amino terminal protease K07052 K07052; CAAX protease family protein
D Spaf_1193 hypothetical protein K07052 K07052; CAAX protease family protein
D Spaf_1911 protease K07052 K07052; CAAX protease family protein
D Spaf_1921 hypothetical protein K07052 K07052; CAAX protease family protein
D Spaf_0294 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D Spaf_1238 hypothetical protein K07052 K07052; CAAX protease family protein
D Spaf_0894 hypothetical protein K07052 K07052; CAAX protease family protein
D Spaf_0910 hypothetical protein K07052 K07052; CAAX protease family protein
D Spaf_0806 pepN; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Spaf_0725 pepF; Oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D Spaf_0350 pepO; endopeptidase O K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D Spaf_0463 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_1227 succinyl-diaminopimelate desuccinylase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_1233 pepV; dipeptidase PepV K01274 pepV; beta-Ala-Xaa dipeptidase [EC:3.4.13.-]
D Spaf_1647 dapE; acetylornithine deacetylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Spaf_1175 pepT; Peptidase T, putative K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D Spaf_1958 aminoacylase/N-acyl-L-amino acid amidohydrolase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
D Spaf_0847 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Spaf_1690 pepP; peptidase M24 family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Spaf_0739 putative zinc metalloprotease K08643 zmpB; zinc metalloprotease ZmpB [EC:3.4.24.-]
D Spaf_0412 Aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-]
D Spaf_0013 ftsH; Membrane ATPase FtsH, degrades sigma32 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Spaf_0300 pepA; glutamyl-aminopeptidase K01261 pepA; glutamyl aminopeptidase [EC:3.4.11.7]
D Spaf_1302 hypothetical protein K01269 yhfE; aminopeptidase [EC:3.4.11.-]
D Spaf_1626 htpX; heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Spaf_0393 Zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Spaf_2108 degP; DegP protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Spaf_1710 serine protease subtilase family LPXTG cell wall surface protein K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D Spaf_1711 serine protease subtilase family LPXTG cell wall surface protein K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D Spaf_0194 Subtilisin-like serine protease K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D Spaf_0528 dacC2; DD-carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Spaf_1545 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Spaf_1833 pepX; Xaa-Pro dipeptidyl-peptidase K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11]
D Spaf_1293 LPXTG cell wall surface protein K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11]
D Spaf_1296 LPXTG cell wall surface protein K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11]
D Spaf_0567 hypothetical protein K07177 K07177; Lon-like protease
D Spaf_1858 putative transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D Spaf_0784 lepB1; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Spaf_1814 lepB2; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Spaf_1457 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:scf01003]
D Spaf_1482 glycosyl transferase, group 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D Spaf_1483 glycosyl transferase K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208]
D Spaf_0738 glgA; Glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D Spaf_0214 pbp1A; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Spaf_0276 Membrane carboxypeptidase K03693 pbp1b; penicillin-binding protein 1B
D Spaf_1999 penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D Spaf_2011 cpsFF; UDP-N-acetyl-D-mannosamine transferase wchO K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D Spaf_0522 Glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:scf01005]
D Spaf_0827 rgpA; putative rhamnosyl transferase K12996 rgpA; rhamnosyltransferase [EC:2.4.1.-]
D Spaf_0828 rgpB; Glycosyltransferase involved in cell wall biogenesis K12997 rgpB; rhamnosyltransferase [EC:2.4.1.-]
D Spaf_0831 rgpE; glucosyltransferase K12998 rgpE; glucosyltransferase [EC:2.4.1.-]
D Spaf_0832 rgpF; Lipopolysaccharide biosynthesis protein K07272 rgpF; rhamnosyltransferase [EC:2.4.1.-]
D Spaf_0522 Glycosyl transferase N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Spaf_0820 Glycosyltransferase K12999 rgpI; glucosyltransferase [EC:2.4.1.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:scf01011]
D Spaf_0749 murA; UDP-N-acetylglucosamine-like protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Spaf_0844 murA2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Spaf_1281 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Spaf_1606 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Spaf_0583 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Spaf_1551 murE2; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase K05362 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [EC:6.3.2.7]
D Spaf_0686 ddlA; D-alanine-D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Spaf_1436 peptidoglycan branched peptide synthesis protein K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10]
D Spaf_1437 beta-lactam resistance factor K12554 murN; alanine adding enzyme [EC:2.3.2.-]
D Spaf_1666 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Spaf_1592 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Spaf_0203 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Spaf_0584 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Spaf_0519 bacA; bacitracin resistance protein/undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Spaf_1579 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Spaf_0214 pbp1A; Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Spaf_0276 Membrane carboxypeptidase K03693 pbp1b; penicillin-binding protein 1B
D Spaf_1999 penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D Spaf_0684 pbpB; Penicillin-binding protein 2B K00687 pbp2B; penicillin-binding protein 2B
D Spaf_0202 pbpX; Penicillin-binding protein 2X K12556 pbp2X; penicillin-binding protein 2X
D Spaf_0528 dacC2; DD-carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Spaf_0463 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_1227 succinyl-diaminopimelate desuccinylase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_0035 Secreted protein, putative function in cell-wall metabolism (amidase) K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Spaf_0018 gbpB; Secreted antigen GbpB/Peptidoglycan hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Spaf_0978 srtA; Sortase, putative K07284 srtA; sortase A [EC:3.4.22.70]
D Spaf_0023 srtB; Surface protein cell wall anchor, sortase_B family K08600 srtB; sortase B [EC:3.4.22.71]
D Spaf_1603 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:scf01004]
D Spaf_0156 fabD; acyl-carrier-protein S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Spaf_1045 3-oxoacyl-acyl-carrier-protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Spaf_0153 fabH; [3-oxoacyl-acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Spaf_0158 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Spaf_0663 fabG2; 3-oxoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Spaf_0157 fabG; 3-oxoacyl-acyl carrier protein reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Spaf_0160 fabZ; (3R)-hydroxymyristoyl ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Spaf_0155 fabK; 2-nitropropane dioxygenase-related dioxygena K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D Spaf_0151 paaG; Enoyl-CoA hydratase/carnithine racemase K18474 fabM; trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:5.3.3.14]
D Spaf_0027 plsX; Fatty acid/phospholipid synthesis protein plsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Spaf_0967 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Spaf_0703 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:scf01006]
D Spaf_0609 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Spaf_0391 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Spaf_1373 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:scf01007]
D Spaf_1936 gltX1; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D Spaf_0275 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Spaf_2102 tryptophanyl-tRNA synthetase II K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Spaf_0435 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Spaf_2041 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Spaf_0618 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Spaf_0592 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Spaf_0546 valRS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Spaf_0363 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Spaf_1447 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Spaf_2060 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Spaf_1201 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Spaf_0099 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Spaf_0195 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Spaf_0196 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Spaf_0164 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Spaf_0394 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Spaf_1481 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Spaf_0729 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Spaf_1406 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Spaf_1404 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Spaf_1661 putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Spaf_0024 patA; Aspartate aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-]
D Spaf_1548 patB; aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Spaf_0972 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Spaf_1765 pabB; chorismate binding enzyme K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:scf00194]
D Spaf_0747 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Spaf_0746 atpD; F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Spaf_0745 atpG; Proton-translocating ATPase, F1 sector, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Spaf_0744 atpA; proton-translocating ATPase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Spaf_0743 atpH; proton-translocating ATPase, F1 sector, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Spaf_0742 atpF; AtpB K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Spaf_0740 atpE; UncE K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Spaf_0741 atpB; proton-translocating ATPase, F0 sector, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:scf03000]
D Spaf_1137 putative DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_1188 cytosine methyl transferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_0878 hypothetical protein K13653 K13653; AraC family transcriptional regulator
D Spaf_1262 lacR; Lactose phosphotransferase system transcriptional repressor K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D Spaf_1161 fruR; Transcriptional repressor of the fructose operon, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D Spaf_1741 DeoR family transcriptional regulator K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D Spaf_1268 CBS domain-containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D Spaf_2056 lactose operon transcriptional repressor, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spaf_1323 galR; Galactose operon transcriptional repressor, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spaf_1484 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spaf_0601 sugar-binding transcriptional regulator, LacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Spaf_1685 scrR; sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D Spaf_1560 treR; GntR family transcriptional regulator K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D Spaf_1040 Transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D Spaf_1892 glnR; MerR family transcriptional regulator K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D Spaf_0889 putative transcriptional regulatory protein K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D Spaf_0616 perR; Fe2+/Zn2+ uptake regulation protein K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D Spaf_0711 Catabolite activator protein and regulatory subunit of cAMP-dependent protein kinase K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator
D Spaf_0414 putative transcriptional regulator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D Spaf_0450 cadX; cadmium efflux system accessory protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Spaf_0087 putative transcriptional regulator K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
D Spaf_0658 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Spaf_0344 scaR; Metalloregulator ScaR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D Spaf_1324 birA; biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Spaf_1980 nadR; ATPase/kinase, putative K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D Spaf_1103 transcriptional regulator, putative K18830 pezA; HTH-type transcriptional regulator / antitoxin PezA
D Spaf_0755 mutR; transcriptional regulator MutR K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator
D Spaf_1873 mutR2; MutR family transcriptional regulator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D Spaf_1622 rggD; putative transcriptional regulator K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D Spaf_0641 putative plasmid maintenance system antidote protein, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D Spaf_1903 purR; purine operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D Spaf_0982 AT-rich DNA-binding protein, putative redox-sensing transcriptional repressor K01926 rex; redox-sensing transcriptional repressor
D Spaf_1660 codY; transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D Spaf_0619 putative transcriptional regulator K07727 K07727; putative transcriptional regulator
D Spaf_1641 DNA-binding protein K07729 K07729; putative transcriptional regulator
D Spaf_0896 putative transcriptional regulator K07729 K07729; putative transcriptional regulator
D Spaf_igr04511 transcriptional regulator K07729 K07729; putative transcriptional regulator
D Spaf_1398 transcriptional regulator, Cro/CI family-related protein K07729 K07729; putative transcriptional regulator
D Spaf_2109 parB; chromosome partitioning protein ParB or transcriptional regulator Spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Spaf_1254 lacT; Transcriptional antiterminator, BglG/SacY family K02531 lacT; transcriptional antiterminator
D Spaf_0718 arcR; Transcriptional repressor (arginine synthesis) K03402 argR; transcriptional regulator of arginine metabolism
D Spaf_0611 argR; Transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism
D Spaf_2040 argR2; transcriptional repressor of arginine synthesis K03402 argR; transcriptional regulator of arginine metabolism
D Spaf_0465 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D Spaf_1986 ctsR; transcriptional repressor CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D Spaf_0452 pspC; putative stress-responsive transcriptional regulator PspC K03973 pspC; phage shock protein C
D Spaf_1180 pyrR; pyrimidine operon transcriptional attenuation protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Spaf_1613 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D Spaf_0014 comX1; transcriptional regulator of competence-specific protein K12296 comX1_2; competence protein ComX
C 03021 Transcription machinery [BR:scf03021]
D Spaf_0145 rpoA; DNA-directed RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Spaf_0277 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Spaf_0278 rpoC; DNA-directed RNA polymerase subunit beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Spaf_0478 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
D Spaf_0224 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Spaf_0777 rpoD; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) K03086 rpoD; RNA polymerase primary sigma factor
D Spaf_0185 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D Spaf_1686 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D Spaf_1995 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D Spaf_1602 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
C 03019 Messenger RNA biogenesis [BR:scf03019]
D Spaf_1476 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Spaf_1890 metallo-beta-lactamase superfamily hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Spaf_1938 metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Spaf_0222 Metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Spaf_1499 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Spaf_1904 CMP-binding-factor 1, putative K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Spaf_0698 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Spaf_0204 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D Spaf_1415 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Spaf_0431 pnpT; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Spaf_0782 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Spaf_0467 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Spaf_0316 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Spaf_0769 putative P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:scf03011]
D Spaf_0974 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D Spaf_1994 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Spaf_0125 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Spaf_2075 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D Spaf_0137 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Spaf_1704 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Spaf_1900 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Spaf_0134 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Spaf_0446 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Spaf_0118 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Spaf_0144 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Spaf_1901 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Spaf_0143 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Spaf_0133 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Spaf_0421 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Spaf_1167 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Spaf_0128 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Spaf_1701 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Spaf_0123 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Spaf_1225 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Spaf_0773 rpsU; 30S Ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Spaf_1518 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Spaf_0122 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Spaf_0119 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Spaf_0120 rplD; Ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D Spaf_0132 rplE; Ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Spaf_0135 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Spaf_2082 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Spaf_1141 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Spaf_1520 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Spaf_1140 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Spaf_0445 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Spaf_0129 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Spaf_0139 rplO; Ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Spaf_0126 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Spaf_0146 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Spaf_0136 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Spaf_0929 rplS; 50S ribosomal protein L19, putative K02884 RP-L19; large subunit ribosomal protein L19
D Spaf_0841 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Spaf_1265 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Spaf_0124 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Spaf_0121 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D Spaf_0131 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Spaf_1263 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Spaf_0499 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Spaf_0127 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Spaf_0138 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Spaf_0916 rpmE; Ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Spaf_0091 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Spaf_0090 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Spaf_1916 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Spaf_0840 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Spaf_r09 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r10 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r11 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r12 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r01 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r03 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r04 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r02 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r05 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r07 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r08 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r06 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:scf03009]
D Spaf_1476 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Spaf_1504 Era-like GTP-binding protein K03595 era; GTPase
D Spaf_0766 Small GTP-binding domain-containing protein K03979 obgE; GTPase [EC:3.6.5.-]
D Spaf_0185 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D Spaf_1686 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D Spaf_1995 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D Spaf_0580 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Spaf_0418 rsuA2; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Spaf_1912 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Spaf_0227 sun; RNA methyltransferase Sun K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Spaf_1223 rsmC; ribosomal protein L11 methyltransferase-like protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Spaf_0565 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Spaf_0335 rsmE; RsmE family RNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Spaf_1628 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Spaf_0200 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Spaf_1533 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Spaf_0610 tlyA; hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Spaf_0269 rrmA; rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D Spaf_0442 trmH; tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Spaf_2107 spoU2; SPOUT methyltransferase superfamily protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Spaf_0858 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Spaf_0575 rlmN; Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Spaf_0874 trmA; RNA methyltransferase, TrmA family protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Spaf_1585 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Spaf_2000 rluD3; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Spaf_0991 rluD; phosphotransacetylase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Spaf_1248 rluD2; RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Spaf_1887 rimI; acetyltransferase (GNAT) family protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Spaf_1165 rimM; 16S rRNA-processing protein K02860 rimM; 16S rRNA processing protein RimM
D Spaf_0334 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Spaf_2027 ruvX; Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Spaf_0436 hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D Spaf_0698 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Spaf_0204 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D Spaf_1909 rsgA; putative GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Spaf_1609 engA; GTP-binding protein EngA K03977 engA; GTPase
D Spaf_1074 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
D Spaf_1372 hflX; GTP-binding protein HflX K03665 hflX; GTPase
D Spaf_0549 hypothetical protein K06948 yqeH; 30S ribosome assembly GTPase
D Spaf_1032 sua5; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Spaf_0342 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Spaf_0189 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Spaf_0184 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D Spaf_2099 hypothetical protein K14761 rlbA; ribosome-associated protein
D Spaf_0554 hypothetical protein K09710 ybeB; ribosome-associated protein
D Spaf_1506 hypothetical protein K07042 ybeY; probable rRNA maturation factor
D Spaf_0550 Ancient RNA-binding protein (CRS1/YhbY domain) K07574 yhbY; RNA-binding protein
D Spaf_0241 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D Spaf_0004 hypothetical protein K06942 ychF; ribosome-binding ATPase
D Spaf_1620 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:scf03016]
D Spaf_1370 elaC; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Spaf_1152 TRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Spaf_0394 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Spaf_0592 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Spaf_0363 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Spaf_0618 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Spaf_2041 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Spaf_1447 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Spaf_2060 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Spaf_0729 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Spaf_1201 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Spaf_1481 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Spaf_0164 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Spaf_0435 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Spaf_0546 valRS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Spaf_0099 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Spaf_1406 pheS; phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Spaf_1404 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Spaf_0275 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Spaf_2102 tryptophanyl-tRNA synthetase II K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Spaf_0343 D-tyrosyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Spaf_0179 Hit-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Spaf_0183 trmB; tRNA (guanine-N(7))-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Spaf_0472 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Spaf_0794 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Spaf_0985 iscS; Pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Spaf_1271 iscS2; Aminotransferase, class-V, putative K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Spaf_1032 sua5; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Spaf_1373 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Spaf_0935 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Spaf_2084 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Spaf_1920 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Spaf_0195 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Spaf_0196 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Spaf_1936 gltX1; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D Spaf_1445 ebsC; Regulatory protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D Spaf_1231 ybaK; YbaK/prolyl-tRNA synthetase associated domain-containing protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D Spaf_1969 hypothetical protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D Spaf_1976 NifR3 family TIM-barrel protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Spaf_1067 glucose-inhibited division protein A K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D Spaf_1164 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Spaf_1356 Bcl-2 family protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D Spaf_1581 cspR; SpoU rRNA methylase family protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Spaf_1598 spoU; SpoU rRNA methylase family protein K03437 spoU; RNA methyltransferase, TrmH family
D Spaf_2086 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Spaf_0719 queA; S-adenosylmethio nine:tRNA-ribosyltransferase-isomerase (queuine synthetase) K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Spaf_1676 Iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Spaf_0117 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Spaf_1270 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Spaf_0011 mesJ; Cell cycle control ATPase, PP-loop superfamily K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Spaf_1888 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Spaf_1886 putative glycoprotease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Spaf_0174 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Spaf_0556 putative nucleotidyltransferase K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D Spaf_1499 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Spaf_0431 pnpT; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:scf03012]
D Spaf_0188 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Spaf_0839 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Spaf_0753 ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Spaf_1993 elongation factor Ts K02357 tsf; elongation factor Ts
D Spaf_1439 Elongation factor Tu, putative K02358 tuf; elongation factor Tu
D Spaf_1899 fusA; elongation factor G K02355 fusA; elongation factor G
D Spaf_1030 prfA; Protein chain release factor A K02835 prfA; peptide chain release factor 1
D Spaf_1516 ribosome recycling factor K02838 frr; ribosome recycling factor
D Spaf_1031 hemK; HemK protein, putative K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Spaf_0005 spoVC; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Spaf_0142 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Spaf_1688 elongation factor P (EF-P) K02356 efp; elongation factor P
D Spaf_1430 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D Spaf_0693 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:scf03110]
D Spaf_1985 clpC; ATP-dependent Clp protease, ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D Spaf_0595 clpE; ATP dependent protease K03697 clpE; ATP-dependent Clp protease ATP-binding subunit ClpE
D Spaf_0388 clpL; ATP-binding subunit of Clp protease and DnaK/DnaJ chaperone K04086 clpL; ATP-dependent Clp protease ATP-binding subunit ClpL
D Spaf_1145 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Spaf_0467 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Spaf_0316 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Spaf_0469 dnaJ; Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D Spaf_1975 hslO; 33 kDa chaperonin protein K04083 hslO; molecular chaperone Hsp33
D Spaf_0466 grpE; Molecular chaperone GrpE (HSP-70 cofactor) K03687 GRPE; molecular chaperone GrpE
D Spaf_0314 groES; chaperone GroES K04078 groES; chaperonin GroES
D Spaf_2108 degP; DegP protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Spaf_0013 ftsH; Membrane ATPase FtsH, degrades sigma32 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Spaf_0741 atpB; proton-translocating ATPase, F0 sector, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Spaf_1710 serine protease subtilase family LPXTG cell wall surface protein K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D Spaf_1711 serine protease subtilase family LPXTG cell wall surface protein K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D Spaf_0194 Subtilisin-like serine protease K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D Spaf_0471 nagZ2; glycosyl hydrolase-related protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Spaf_0259 glycosyl hydrolase-related protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Spaf_1528 ppiA; peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Spaf_0235 Cof family protein K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Spaf_0727 prsA; Foldase protein prsA precursor K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D Spaf_1295 Thioredoxin K03671 TXN; thioredoxin
D Spaf_0423 thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:scf04131]
D Spaf_1619 flotillin-like protein K07192 FLOT; flotillin
D Spaf_0257 sugar hydrolase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D Spaf_1898 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Spaf_0617 pgaM3; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0248 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0483 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0783 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:scf03032]
D Spaf_1137 putative DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_1188 cytosine methyl transferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_0615 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D Spaf_0001 dnaA; Chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D Spaf_2081 dnaB2; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Spaf_0775 dnaG; DNA primase (bacterial type) K02316 dnaG; DNA primase [EC:2.7.7.101]
D Spaf_1612 dnaB; replication initiation and membrane attachment protein K03346 dnaB; replication initiation and membrane attachment protein
D Spaf_1611 dnaI; primosomal protein DnaI K11144 dnaI; primosomal protein DnaI
D Spaf_1703 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_0304 Single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_0781 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Spaf_0407 polC; Gram-positive type DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Spaf_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Spaf_0707 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Spaf_1535 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Spaf_1835 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Spaf_1339 dnaX; DNA-directed DNA polymerase III chain K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Spaf_1073 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Spaf_1813 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D Spaf_0114 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Spaf_0854 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Spaf_0977 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Spaf_1420 gyrB; gyrB protein for DNA gyrase subunit B,DNA gyrase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Spaf_0971 parC; Gram positive topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Spaf_0969 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Spaf_1070 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:scf03036]
D Spaf_1137 putative DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_1188 cytosine methyl transferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_1476 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Spaf_1619 flotillin-like protein K07192 FLOT; flotillin
D Spaf_0615 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D Spaf_0001 dnaA; Chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D Spaf_1989 DNA protection system, DNA-binding ferritin-like protein K04047 dps; starvation-inducible DNA-binding protein
D Spaf_1475 chromosome segregation protein K03529 smc; chromosome segregation protein
D Spaf_1587 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D Spaf_1586 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D Spaf_0586 ftsA; Cell division protein FtsA, putative K03590 ftsA; cell division protein FtsA
D Spaf_0008 divIC; cell division protein DivIC K13052 divIC; cell division protein DivIC
D Spaf_1429 ftsE; Cell division protein FtsE, putative K09812 ftsE; cell division transport system ATP-binding protein
D Spaf_1524 ftsK2; DNA segregation ATPase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Spaf_0400 ftsK; DNA segregation ATPase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Spaf_0201 Cell division protein K03586 ftsL; cell division protein FtsL
D Spaf_0585 ftsQ; Cell division protein DivIB, putative K03589 ftsQ; cell division protein FtsQ
D Spaf_1441 ftsW; Cell division protein FtsW, putative K03588 ftsW; cell division protein FtsW
D Spaf_1428 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D Spaf_0587 ftsZ; Cell division protein FtsZ, putative K03531 ftsZ; cell division protein FtsZ
D Spaf_1419 ezrA; Cell division regulator, negative regulator of FtsZ septation ring formation K06286 ezrA; septation ring formation regulator
D Spaf_0591 divI; Cell division protein DivIVA K04074 divIVA; cell division initiation protein
D Spaf_0589 hypothetical protein K09772 sepF; cell division inhibitor SepF
D Spaf_0017 mreC; Cell shape determining protein MreC K03570 mreC; rod shape-determining protein MreC
D Spaf_igr0017 mreD; rod shape-determining protein K03571 mreD; rod shape-determining protein MreD
D Spaf_1423 rodA; Rod shape determining protein K05837 rodA; rod shape determining protein RodA
D Spaf_2109 parB; chromosome partitioning protein ParB or transcriptional regulator Spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Spaf_0971 parC; Gram positive topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Spaf_0969 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Spaf_2084 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Spaf_1628 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Spaf_1067 glucose-inhibited division protein A K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D Spaf_0900 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D Spaf_1868 hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D Spaf_1144 engB; GTP-binding protein, putative K03978 engB; GTP-binding protein
D Spaf_0771 hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:scf03400]
D Spaf_1531 putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Spaf_0956 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Spaf_0995 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Spaf_0678 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Spaf_0904 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Spaf_1185 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Spaf_0594 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Spaf_0332 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Spaf_0957 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Spaf_1978 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Spaf_0667 NUDIX family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Spaf_1947 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Spaf_2033 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D Spaf_1503 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Spaf_0681 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Spaf_1365 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Spaf_0854 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Spaf_0114 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Spaf_1691 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Spaf_1192 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D Spaf_1237 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Spaf_0789 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Spaf_0277 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Spaf_0278 rpoC; DNA-directed RNA polymerase subunit beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Spaf_0145 rpoA; DNA-directed RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Spaf_0478 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
D Spaf_0224 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Spaf_0006 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Spaf_2039 mutS3; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D Spaf_1810 mutS2; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D Spaf_2035 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Spaf_0607 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Spaf_0608 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Spaf_0781 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Spaf_0407 polC; Gram-positive type DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Spaf_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Spaf_0707 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Spaf_1535 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Spaf_1835 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Spaf_1339 dnaX; DNA-directed DNA polymerase III chain K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Spaf_1703 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_0304 Single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_1815 recD; helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Spaf_2031 recA; recA protein K03553 recA; recombination protein RecA
D Spaf_2034 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Spaf_0053 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Spaf_0225 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Spaf_1945 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Spaf_2100 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
D Spaf_1665 recG; ATP-dependent DNA helicase recG, transcription-repair coupling factor K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Spaf_0026 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
D Spaf_0685 recR; Recombinational DNA repair protein K06187 recR; recombination protein RecR
D Spaf_0612 recN; DNA repair and genetic recombination K03631 recN; DNA repair protein RecN (Recombination protein N)
D Spaf_0215 recU; recombination protein U K03700 recU; recombination protein U
D Spaf_1376 rexA; Exonuclease RexA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D Spaf_1378 Second subunit of major exonuclease K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Spaf_0709 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D Spaf_0977 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Spaf_1420 gyrB; gyrB protein for DNA gyrase subunit B,DNA gyrase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Spaf_1070 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Spaf_0615 hupB; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D Spaf_1816 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Spaf_0562 umuC; SOS responce UmuC protein K03502 umuC; DNA polymerase V
D Spaf_1858 putative transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D Spaf_0536 recX; recombination regulator RecX K03565 recX; regulatory protein
D Spaf_1426 dinG; ATP-dependent DNA helicase, DNA polymerase III, epsilon subunit K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Spaf_0731 nrdA; ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Spaf_0730 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Spaf_0918 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:scf03029]
D Spaf_0188 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Spaf_0839 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Spaf_1993 elongation factor Ts K02357 tsf; elongation factor Ts
D Spaf_1439 Elongation factor Tu, putative K02358 tuf; elongation factor Tu
D Spaf_1899 fusA; elongation factor G K02355 fusA; elongation factor G
D Spaf_1504 Era-like GTP-binding protein K03595 era; GTPase
D Spaf_0275 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Spaf_0363 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Spaf_2060 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Spaf_2041 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Spaf_1657 gatA2; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Spaf_1656 gatB2; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Spaf_1658 gatC2; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Spaf_1703 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_0304 Single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Spaf_0467 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Spaf_0466 grpE; Molecular chaperone GrpE (HSP-70 cofactor) K03687 GRPE; molecular chaperone GrpE
D Spaf_0316 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Spaf_0314 groES; chaperone GroES K04078 groES; chaperonin GroES
D Spaf_0469 dnaJ; Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D Spaf_0985 iscS; Pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Spaf_1271 iscS2; Aminotransferase, class-V, putative K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Spaf_1600 OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Spaf_1919 membrane protein (preprotein translocase) oxaA 1 precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:scf02000]
D Spaf_1212 Multidrug ABC transporter, ATPase and permease component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1211 ABC-type multidrug transport system, ATPase and permease component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1086 membrane-spanning protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1382 ABC transporter-like protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1198 Multidrug ABC transporter, ATPase and permease component K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1084 ABC transporter ATP binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1197 Multidrug ABC transporter, ATPase and permease component K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1381 ABC transporter-like protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Spaf_1508 ABC-type multidrug transport system, ATPase and permease component K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein
D Spaf_1507 msbA; putative ABC transporter K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein
D Spaf_1151 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D Spaf_1277 potD; putrescine ABC transporter K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Spaf_1278 potC; ABC transporter membrane-spanning permease-spermidine K11070 potC; spermidine/putrescine transport system permease protein
D Spaf_1279 potB; ABC transporter membrane-spanning permease-spermidine K11071 potB; spermidine/putrescine transport system permease protein
D Spaf_1280 potA; spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Spaf_0369 ABC-type choline transporter, membrane-spanning permease K05845 opuC; osmoprotectant transport system substrate-binding protein
D Spaf_0368 choline transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Spaf_0438 msmX; ABC transporter ATP-binding protein-multiple sugar transport K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Spaf_2050 maltose/maltodextrin-binding protein precursor K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Spaf_2052 malF; maltodextrin transport system permease protein malC K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Spaf_2054 malG; ABC-type maltose transport system, permease component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Spaf_1320 msmE; ABC transporter, sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Spaf_1319 msmF; ABC transporter membrane-spanning permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Spaf_1318 msmG; sugar ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Spaf_0262 ABC transporter solute binding protein - sugar transport K17318 lplA; putative aldouronate transport system substrate-binding protein
D Spaf_1332 putative sugar ABC transporter substrate-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Spaf_0260 ABC transporter, permease protein K17319 lplB; putative aldouronate transport system permease protein
D Spaf_1334 ABC-type polysaccharide transport system, permease component K17319 lplB; putative aldouronate transport system permease protein
D Spaf_0261 ABC transporter membrane spanning permease - sugar transport K17320 lplC; putative aldouronate transport system permease protein
D Spaf_1333 ABC-type sugar transport system, permease component K17320 lplC; putative aldouronate transport system permease protein
D Spaf_0305 rbsB; Periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D Spaf_0602 ABC transporter, sugar-binding protein K10120 msmE; fructooligosaccharide transport system substrate-binding protein
D Spaf_0603 ABC transporter, permease protein K10121 msmF; fructooligosaccharide transport system permease protein
D Spaf_0604 ABC transporter membrane-spanning permease - sugar transport K10122 msmG; fructooligosaccharide transport system permease protein
D Spaf_1219 bmpA; Lipoprotein, putative K07335 bmpA; basic membrane protein A and related proteins
D Spaf_1217 Sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D Spaf_1216 Sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D Spaf_1218 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Spaf_0065 sugar ABC transporter, sugar-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Spaf_0308 Sugar-binding periplasmic protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Spaf_0066 sugar ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D Spaf_0067 sugar ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Spaf_0800 pstS; ABC-type phosphate transport system, periplasmic component K02040 pstS; phosphate transport system substrate-binding protein
D Spaf_0801 pstC; ABC transporter membrane-spanning permease-phosphate transport K02037 pstC; phosphate transport system permease protein
D Spaf_0802 pstA; ABC transporter membrane-spanning permease-phosphate transport K02038 pstA; phosphate transport system permease protein
D Spaf_0803 pstB; ABC transporter ATP-binding protein - phosphate transport K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Spaf_0804 pstB2; Phosphate import ATP-binding protein pstB 1 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Spaf_1195 glutamine ABC transporter membrane protein K10036 glnH; glutamine transport system substrate-binding protein
D Spaf_1196 excinuclease ABC subunit B K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D Spaf_1649 L-cystine ABC transporter, substrate-binding component K02424 tcyA; L-cystine transport system substrate-binding protein
D Spaf_0205 ABC-type arginine/histidine transport system, permease component K10009 tcyB; L-cystine transport system permease protein
D Spaf_0206 ABC-type polar amino acid transport system, ATPase component K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D Spaf_0378 Amino acid ABC transporter, periplasmic amino acid-binding protein K16957 tcyK; L-cystine transport system substrate-binding protein
D Spaf_0379 ABC-type arginine/histidine transporter, permease protein K16958 tcyL; L-cystine transport system permease protein
D Spaf_0380 ABC-type arginine/histidine transporter, permease protein K16959 tcyM; L-cystine transport system permease protein
D Spaf_0381 Amino acid ABC transporter, ATP-binding protein K16960 tcyN; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D Spaf_1543 livK; branched-chain amino acid transport protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Spaf_1542 livH; ABC transporter membrane-spanning permease-branched chain amino acid transport K01997 livH; branched-chain amino acid transport system permease protein
D Spaf_1541 livM; branched-chain amino acid transport system permease protein K01998 livM; branched-chain amino acid transport system permease protein
D Spaf_1540 livG; branched-chain amino acid transport protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Spaf_1539 livF; branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Spaf_1648 metQ; putative lipoprotein transporter K02073 metQ; D-methionine transport system substrate-binding protein
D Spaf_1645 metI; putative ABC transporter system permease protein K02072 metI; D-methionine transport system permease protein
D Spaf_1646 metN; ABC-type metal ion transport system, ATPase component K02071 metN; D-methionine transport system ATP-binding protein
D Spaf_1564 hypothetical protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D Spaf_1408 ABC-type uncharacterized transport system, periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D Spaf_1562 transport system permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D Spaf_1941 ABC transporter permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D Spaf_1561 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D Spaf_1940 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D Spaf_0516 Amino acid ABC transporter, amino acid-binding protein/permease protein K17073 lysX1; putative lysine transport system substrate-binding protein
D Spaf_0515 Amino acid ABC transporter, ATP-binding protein K17076 lysY; putative lysine transport system ATP-binding protein
D Spaf_0787 amino acid ABC transporter, amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Spaf_0785 ABC transporter membrane-spanning permease - glutamine transport K02029 ABC.PA.P; polar amino acid transport system permease protein
D Spaf_0786 amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Spaf_0362 aliA; AliA protein K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_1301 Oligopeptide-binding lipoprotein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0657 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0679 ABC-type oligopeptide transport system, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0529 ABC-type oligopeptide transporter, periplasmic component K15580 oppA; oligopeptide transport system substrate-binding protein
D Spaf_0530 Oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D Spaf_0531 Oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D Spaf_0532 Oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D Spaf_0533 Oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D Spaf_1569 ABC transporter ATP binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D Spaf_0622 Zn-porter lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D Spaf_0252 adcA; Metal-binding (Zn) permease, putative K09815 znuA; zinc transport system substrate-binding protein
D Spaf_0251 adcB; ABC transporter (permease), Zn porter K09816 znuB; zinc transport system permease protein
D Spaf_0250 adcC; ABC transporter, Zn porter, putative K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Spaf_0347 fimA; zinc/manganese ABC transporter binding protein, FimA K19971 psaA; manganese/zinc transport system substrate-binding protein
D Spaf_0348 fimB; zinc/manganese ABC transporter membrane protein,FimB K19972 psaC; manganese/zinc transport system permease protein
D Spaf_0349 fimC; zinc/manganese ABC transporter ATP binding protein, FimC K10830 psaB; manganese/zinc transport system ATP-binding protein [EC:7.2.2.5]
D Spaf_0812 bioY; Biotin synthase K03523 bioY; biotin transport system substrate-specific component
D Spaf_1763 hypothetical protein K16923 qrtT; energy-coupling factor transport system substrate-specific component
D Spaf_1642 hypothetical protein K16924 mtsT; energy-coupling factor transport system substrate-specific component
D Spaf_1644 hypothetical protein K16926 htsT; energy-coupling factor transport system substrate-specific component
D Spaf_1984 hypothetical protein K16927 cbrT; energy-coupling factor transport system substrate-specific component
D Spaf_1633 cbiQ; cobalt transport family protein K16785 ecfT; energy-coupling factor transport system permease protein
D Spaf_1761 cobalt ABC transporter permease K16785 ecfT; energy-coupling factor transport system permease protein
D Spaf_2092 cbiQ2; cobalt transport protein cbiQ K16785 ecfT; energy-coupling factor transport system permease protein
D Spaf_1760 ABC transporter ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Spaf_2094 cbiO4; ABC transporter ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Spaf_1759 cbiO2; cobalt transport ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Spaf_2093 cbiO3; cobalt transporter ATP-binding subunit K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Spaf_1634 cbiO; ABC-type cobalt transport system, ATPase component K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Spaf_0272 putative ABC transporter, integral membrane protein K11051 cylB; multidrug/hemolysin transport system permease protein
D Spaf_0271 ABC-type multidrug transport system, ATPase component K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D Spaf_1111 sboF; SboF K20459 nukF; lantibiotic transport system ATP-binding protein
D Spaf_1110 sboE; SboE K20460 nukE; lantibiotic transport system permease protein
D Spaf_1109 sboG; SboG K20461 nukG; lantibiotic transport system permease protein
D Spaf_0629 ABC transporter, permease protein K19084 braE; bacitracin transport system permease protein
D Spaf_0656 ABC-type bacitracin resistance protein A, permease component K19084 braE; bacitracin transport system permease protein
D Spaf_0628 ABC transporter ATP binding protein K19083 braD; bacitracin transport system ATP-binding protein
D Spaf_0655 ABC transporter ATP binding protein K19083 braD; bacitracin transport system ATP-binding protein
D Spaf_1448 ABC transporter ATP-binding protein K24948 yknZ; antimicrobial peptide resistance transport system permease protein
D Spaf_1449 ABC-type antimicrobial peptide transporter, ATPase component K24949 yknY; antimicrobial peptide resistance transport system ATP-binding protein [EC:7.6.2.-]
D Spaf_1428 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D Spaf_1429 ftsE; Cell division protein FtsE, putative K09812 ftsE; cell division transport system ATP-binding protein
D Spaf_0489 hypothetical protein K25154 evrC; viologen exporter family transport system permease protein
D Spaf_0488 hypothetical protein K25155 evrB; viologen exporter family transport system permease protein
D Spaf_0487 ABC transporter, ATP-binding protein K25156 evrA; viologen exporter family transport system ATP-binding protein
D Spaf_0181 ABC transporter, permease protein K25157 ecsB; ABC-2 type transport system permease protein
D Spaf_0180 ABC-type multidrug transport system, ATPase component K25158 ecsA; ABC-2 type transport system ATP-binding protein
D Spaf_1395 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Spaf_1289 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Spaf_0829 rgpC; polysaccharide ABC transporter membrane-spanning protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Spaf_0321 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Spaf_0506 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Spaf_0810 ABC transporter membrane-spanning protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Spaf_0887 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Spaf_1769 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Spaf_1122 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Spaf_1768 ABC-type multidrug transport system K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_0830 rgpD; putative polysaccharide ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_1396 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_0779 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_1290 ABC-type multidrug transporter, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_0320 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_0505 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_0809 ABC transporter ATP binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_0888 ABC transporter-like protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_1095 ABC multidrug transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_1123 putative transport ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Spaf_1328 vexp3; ABC transporter, permease protein Vexp3 K02004 ABC.CD.P; putative ABC transport system permease protein
D Spaf_1330 vexp1; ABC transporter, transmembrane protein Vexp1 K02004 ABC.CD.P; putative ABC transport system permease protein
D Spaf_0666 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D Spaf_1491 ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D Spaf_1058 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D Spaf_1056 ABC transporter ATP bindingbacteriocine associated protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Spaf_1862 amino acid ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Spaf_1329 ABC transporter ATP-binding protein - Pep export K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Spaf_1492 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Spaf_1385 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Spaf_0665 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Spaf_0523 sufC; ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Spaf_1026 Na+-driven multidrug efflux pump K26939 norM; MATE family, multidrug efflux pump
D Spaf_1003 dinF; MATE efflux family protein DinF K26937 dinF; MATE family, multidrug efflux pump
D Spaf_0101 Multi antimicrobial extrusion (MATE) family transporter K26937 dinF; MATE family, multidrug efflux pump
D Spaf_1347 major facilitator family transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D Spaf_0867 ydiM; putative transport protein ydiM K26745 ydiM_N; MFS transporter, AAHS family, multidrug transporter
D Spaf_0865 putative transport protein K26745 ydiM_N; MFS transporter, AAHS family, multidrug transporter
D Spaf_0084 transporter protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D Spaf_1501 multi-drug resistance efflux pump K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D Spaf_0734 ptsI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Spaf_0733 pstH; phosphoenolpyruvate:sugar phosphotransferase system HPr K02784 ptsH; phosphocarrier protein HPr
D Spaf_1615 ptsG; PTS system, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D Spaf_1682 scrA; phosphotransferase system IIC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D Spaf_1559 treB; pts system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D Spaf_1158 fruA; Phosphotransferase system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D Spaf_1253 lacF2; cellobiose-specific PTS system IIA component K02786 lacF; lactose PTS system EIIA component [EC:2.7.1.207]
D Spaf_1252 lacE; Phosphotransferase system lactose-specific component IIBC K02788 lacE; lactose PTS system EIICB component [EC:2.7.1.207]
D Spaf_0354 celC; putative PTS system, enzyme III K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Spaf_0355 celA; Phosphotransferase system (PTS), cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Spaf_0356 celB; PTS lactose/cellobiose IIC component K02761 celB; cellobiose PTS system EIIC component
D Spaf_0651 cellobiose PTS system component IIC K02761 celB; cellobiose PTS system EIIC component
D Spaf_1261 gatA; PTS system enzyme IIBC component K20112 gatA; galactose PTS system EIIA component [EC:2.7.1.204]
D Spaf_1260 gatB; PTS system IIB component K20113 gatB; galactose PTS system EIIB component [EC:2.7.1.204]
D Spaf_1259 gatC; PTS system, IIC component K20114 gatC; galactose PTS system EIIC component
D Spaf_0169 manL; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D Spaf_0050 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Spaf_0047 PTS system, IIC component K02795 manY; mannose PTS system EIIC component
D Spaf_0168 manM; Phosphotransferase system, mannose-specific EIIC K02795 manY; mannose PTS system EIIC component
D Spaf_0311 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D Spaf_0048 Phosphotransferase system sugar-specific EIID component K02796 manZ; mannose PTS system EIID component
D Spaf_0167 manN; Phosphotransferase system, mannose-specific EIID K02796 manZ; mannose PTS system EIID component
D Spaf_0309 PTS system, sugar-specific enzyme IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D Spaf_1878 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D Spaf_0774 putative large conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D Spaf_1806 small-conductance mechanosensitive efflux channel K22044 ybiO; moderate conductance mechanosensitive channel
D Spaf_1692 CorA-like Mg2+ transporter protein K03284 corA; magnesium transporter
D Spaf_0451 putative membrane protein K24915 TMEM175; TMEM175 potassium channel family protein
D Spaf_1565 tlyC; hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Spaf_1876 cidA; murein hydrolase exporter K06518 cidA; holin-like protein
D Spaf_1749 cation efflux protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D Spaf_1353 putative gufA-like protein K07238 TC.ZIP; zinc transporter, ZIP family
D Spaf_1807 sstT; serine/threonine transporter SstT K07862 sstT; serine/threonine transporter
D Spaf_1575 sodium/hydrogen exchanger family protein K24163 nhaK; monovalent cation/hydrogen antiporter
D Spaf_1735 trkH2; Trk transporter membrane-spanning protein-K+ transport K03498 trkH; trk/ktr system potassium uptake protein
D Spaf_1583 trkH; Trk family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D Spaf_1733 trkA2; Trk transporter NAD+ binding protein-K+ transport K03499 trkA; trk/ktr system potassium uptake protein
D Spaf_1582 trkA; potassium transporter peripheral membrane component K03499 trkA; trk/ktr system potassium uptake protein
D Spaf_0096 pyrP; uracil permease K02824 uraA; uracil permease
D Spaf_1025 xanthine permease K16169 pbuX; xanthine permease
D Spaf_0173 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D Spaf_1014 site-specific tyrosine recombinase XerC-like protein K03281 clcA; chloride channel protein, CIC family
D Spaf_0943 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D Spaf_0928 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D Spaf_1493 putative manganese transporter K03322 mntH; manganese transport protein
D Spaf_0190 hypothetical protein K03324 yjbB; phosphate:Na+ symporter
D Spaf_1752 ABC transporter permease protein, putative malate permease K24180 mleP; malate permease and related proteins
D Spaf_1881 transport protein-like protein K26605 azlC; branched chain amino acid efflux pump
D Spaf_1880 hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D Spaf_1580 hypothetical protein K23675 fmnP; riboflavin transporter
D Spaf_0648 hypothetical protein K22736 VIT; vacuolar iron transporter family protein
D Spaf_1441 ftsW; Cell division protein FtsW, putative K03588 ftsW; cell division protein FtsW
D Spaf_1018 pbrT; putative membrane protein of the lead (Pb2+) uptake porter family K07243 FTR; high-affinity iron transporter
D Spaf_1015 hypothetical protein K07224 efeO; iron uptake system component EfeO
D Spaf_1016 putative iron-dependent peroxidase K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D Spaf_1007 ccdA2; Cytochrome C-type biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D Spaf_0568 ccdA; Cytochrome C-type biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D Spaf_1451 hlyD; Membrane-fusion protein K24950 yknX; membrane fusion protein, antimicrobial resistance system
D Spaf_2013 cpsFD; putative autophosphorylating protein tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Spaf_2014 cpsC; MPA1 family polysaccharide export protein K19420 epsA; protein tyrosine kinase modulator
D Spaf_1753 nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D Spaf_1979 pnuC; nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D Spaf_1402 feoA; Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A
D Spaf_1403 feoB; ferrous ion transport protein B K04759 feoB; ferrous iron transport protein B
C 02044 Secretion system [BR:scf02044]
D Spaf_0704 comEA; DNA uptake protein K02237 comEA; competence protein ComEA
D Spaf_0842 comEB; DCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Spaf_0705 comEC; Competence protein K02238 comEC; competence protein ComEC
D Spaf_0239 comFA; Superfamily II DNA/RNA helicase required for DNA uptake K02240 comFA; competence protein ComFA
D Spaf_0240 comFC; Late competence protein, putative K02242 comFC; competence protein ComFC
D Spaf_0284 putative ABC transporter subunit ComYA K02243 comGA; competence protein ComGA
D Spaf_0286 comYB; Competence protein ComYB K02244 comGB; competence protein ComGB
D Spaf_0287 comYC; ComYC competence protein K02245 comGC; competence protein ComGC
D Spaf_0288 comYD; Competence protein ComYD K02246 comGD; competence protein ComGD
D Spaf_0290 comGF; ComYD-like protein K02248 comGF; competence protein ComGF
D Spaf_0577 comC; type IV prepilin peptidase K02236 comC; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Spaf_1129 traG; TraG/TraD family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D Spaf_1670 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Spaf_1926 secA2; preprotein translocase subunit SecA2 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Spaf_1997 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D Spaf_1500 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D Spaf_1930 secY2; preprotein translocase subunit SecY2 K03076 secY; preprotein translocase subunit SecY
D Spaf_0140 secY1; preprotein translocase subunit SecY1 K03076 secY; preprotein translocase subunit SecY
D Spaf_1047 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Spaf_1472 ftsY; putative signal recognition particle 54 K03110 ftsY; fused signal recognition particle receptor
D Spaf_0390 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D Spaf_1600 OxaA-like protein precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Spaf_1919 membrane protein (preprotein translocase) oxaA 1 precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Spaf_1929 gap1; glycosylation associated protein, mature Fap1 export and glycosylation,gap1 K12268 asp1; accessory secretory protein Asp1
D Spaf_1928 gap2; glycosylation associated protein, mature Fap1 export and glycosylation,gap2 K12269 asp2; accessory secretory protein Asp2
D Spaf_1927 gap3; glycosylation associated protein, mature Fap1 export and glycosylation,gap3 K12270 asp3; accessory secretory protein Asp3
D Spaf_1020 TatA, sec-independent protein secretion pathway component K03116 tatA; sec-independent protein translocase protein TatA
D Spaf_1019 tatC; Sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:scf02042]
D Spaf_1922 exfoliative toxin, putative K11041 eta; exfoliative toxin A/B
D Spaf_1565 tlyC; hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Spaf_1208 hlyIII; hemolysin III-like Membrane protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:scf02022]
D Spaf_1479 vicK; histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D Spaf_1480 vicR; response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D Spaf_0626 D-tyrosyl-tRNA deacylase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D Spaf_0625 response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D Spaf_0815 ciaH; Sensor protein ciaH K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D Spaf_0814 Response regulator, transcriptional regulatory protein K14983 ciaR; two-component system, OmpR family, response regulator CiaR
D Spaf_1097 nisK; NisK K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Spaf_1119 nisK2; NisK K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D Spaf_1096 nisR; NisR K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D Spaf_1120 nisR2; NisR K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D Spaf_0507 desK; sensor histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D Spaf_0508 DNA-binding response regulator K07693 desR; two-component system, NarL family, response regulator DesR
D Spaf_0233 Histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D Spaf_0234 Two-component response transcriptional regulator K11618 liaR; two-component system, NarL family, response regulator LiaR
D Spaf_0318 comD; histidine protein kinase ComD K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D Spaf_0317 comE; putative response regulator of the competence regulon, ComE K07707 agrA; two-component system, LytTR family, response regulator AgrA
D Spaf_2106 agrC2; histidine protein kinase ComD K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D Spaf_2105 two-component system LytR/AlgR family transcriptional regulator K12295 comE; two-component system, LytTR family, response regulator ComE
D Spaf_0273 Transcriptional regulator, LytTr family K02477 K02477; two-component system, LytTR family, response regulator
D Spaf_0573 Two-component sensor kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Spaf_0264 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Spaf_1335 putative histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Spaf_1337 two-component response regulator K07720 yesN; two-component system, response regulator YesN
D Spaf_0265 DNA-binding response regulator K07720 yesN; two-component system, response regulator YesN
D Spaf_0572 Two-component response transcriptional regulator K07720 yesN; two-component system, response regulator YesN
C 02035 Bacterial motility proteins [BR:scf02035]
D Spaf_1649 L-cystine ABC transporter, substrate-binding component K02424 tcyA; L-cystine transport system substrate-binding protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:scf04812]
D Spaf_0587 ftsZ; Cell division protein FtsZ, putative K03531 ftsZ; cell division protein FtsZ
D Spaf_0586 ftsA; Cell division protein FtsA, putative K03590 ftsA; cell division protein FtsA
D Spaf_2109 parB; chromosome partitioning protein ParB or transcriptional regulator Spo0J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:scf04147]
D Spaf_1415 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Spaf_1898 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Spaf_1894 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Spaf_0783 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Spaf_1528 ppiA; peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Spaf_1619 flotillin-like protein K07192 FLOT; flotillin
D Spaf_0316 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Spaf_0467 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Spaf_1967 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Spaf_2101 guaB; inositol-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Spaf_1439 Elongation factor Tu, putative K02358 tuf; elongation factor Tu
D Spaf_0179 Hit-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Spaf_0644 L-2-hydroxyisocaproate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_0976 ldh; L-lactate dehydrogenase 1 K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Spaf_0141 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Spaf_1362 Adenine phosphoribosyltransferase, putative K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Spaf_1297 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Spaf_1299 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Spaf_0113 alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Spaf_1987 hypothetical protein K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Spaf_1315 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Spaf_0735 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Spaf_0914 glpK; Glycerol kinase, putative K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Spaf_1891 glnA; putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Spaf_0034 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Spaf_1060 pdhD; Dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Spaf_1471 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Spaf_1438 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Spaf_0617 pgaM3; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0248 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Spaf_0483 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:scf02048]
D Spaf_0637 hsdR; putative HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Spaf_0639 hsdS; DNA specificity domain-containing restriction modification system protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Spaf_0638 hsdM; putative HsdM K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Spaf_1695 putative type I RM modification enzyme K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Spaf_0292 Adenine-specific DNA methylase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D Spaf_1137 putative DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_1188 cytosine methyl transferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Spaf_0409 hypothetical protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D Spaf_0408 hypothetical protein K07473 dinJ; DNA-damage-inducible protein J
D Spaf_0558 hypothetical protein K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D Spaf_0557 hypothetical protein K19159 yefM; antitoxin YefM
D Spaf_0452 pspC; putative stress-responsive transcriptional regulator PspC K03973 pspC; phage shock protein C
D Spaf_0891 hypothetical protein K19092 parE1_3_4; toxin ParE1/3/4
D Spaf_0641 putative plasmid maintenance system antidote protein, XRE family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D Spaf_1102 hypothetical protein K16214 pezT; UDP-N-acetylglucosamine kinase [EC:2.7.1.176]
D Spaf_1103 transcriptional regulator, putative K18830 pezA; HTH-type transcriptional regulator / antitoxin PezA
D Spaf_0587 ftsZ; Cell division protein FtsZ, putative K03531 ftsZ; cell division protein FtsZ
D Spaf_0971 parC; Gram positive topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Spaf_0969 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Spaf_0985 iscS; Pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Spaf_1271 iscS2; Aminotransferase, class-V, putative K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:scf04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:scf04090]
C 01504 Antimicrobial resistance genes [BR:scf01504]
D Spaf_0970 aadK; aminoglycoside adenylyltransferase K05593 aadK; aminoglycoside 6-adenylyltransferase [EC:2.7.7.-]
D Spaf_1508 ABC-type multidrug transport system, ATPase and permease component K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein
D Spaf_1507 msbA; putative ABC transporter K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein
D Spaf_0463 D-alanyl-D-alanine carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_1227 succinyl-diaminopimelate desuccinylase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Spaf_2065 dltC2; D-alanine--poly(phosphoribitol) ligase subunit 1 K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D Spaf_2064 dltB; integral membrane protein K03739 dltB; membrane protein involved in D-alanine export
D Spaf_2063 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 K14188 dltC; D-alanine--poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13]
D Spaf_2062 dltD; dltD protein K03740 dltD; D-alanine transfer protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:scf00537]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:scf03100]
D Spaf_t02 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Spaf_t23 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Spaf_t39 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Spaf_t21 trnA; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Spaf_t10 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t11 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t47 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t48 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t61 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t51 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t54 trnR; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Spaf_t22 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Spaf_t59 trnN; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Spaf_t04 trnD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Spaf_t41 trnD; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Spaf_t58 trnC; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Spaf_t34 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Spaf_t53 trnQ; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Spaf_t01 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Spaf_t60 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Spaf_t27 trnE; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Spaf_t08 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Spaf_t45 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Spaf_t18 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Spaf_t25 trnG; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Spaf_t33 trnH; tRNA-His K14226 tRNA-His; tRNA His
D Spaf_t19 trnI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Spaf_t26 trnI; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Spaf_t35 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t46 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t09 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t06 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t43 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t56 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t37 trnL; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Spaf_t36 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Spaf_t05 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Spaf_t42 trnK; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Spaf_t16 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Spaf_t29 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Spaf_t14 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Spaf_t13 trnM; tRNA-Met K14230 tRNA-Met; tRNA Met
D Spaf_t17 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Spaf_t30 trnF; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Spaf_t12 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Spaf_t49 trnP; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Spaf_t15 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t20 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t50 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t57 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t28 trnS; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Spaf_t07 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Spaf_t44 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Spaf_t55 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Spaf_t38 trnT; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Spaf_t32 trnW; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Spaf_t52 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Spaf_t31 trnY; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Spaf_t03 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Spaf_t40 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Spaf_t24 trnV; tRNA-Val K14237 tRNA-Val; tRNA Val
D Spaf_r01 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r03 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r04 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r02 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Spaf_r05 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r07 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r08 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r06 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Spaf_r09 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r10 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r11 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Spaf_r12 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Spaf_1798 msrB; peptide methionine sulfoxide reductase msrA/msrB K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D Spaf_0571 msrA; Peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D Spaf_1357 Glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D Spaf_0346 tpx; thiol peroxidase (tpx) K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Spaf_0772 Thioredoxin reductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D Spaf_2017 nrdG; putative anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D Spaf_1555 pflA2; Pyruvate formate-lyase 3 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Spaf_0351 pflA; Pyruvate formate-lyase 3 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Spaf_1496 tehB; Tellurite resistance protein TehB family protein K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D Spaf_0218 methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D Spaf_1405 Acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D Spaf_1463 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Spaf_1012 apbE; thiamine biosynthesis protein ApbE, putative K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Spaf_0501 Dihydroxyacetone kinase family protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D Spaf_1267 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D Spaf_0761 hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D Spaf_1464 ptsK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D Spaf_1937 estA; esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D Spaf_2015 cpsB; wzh/putative phosphotyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D Spaf_0548 HAD superfamily protein (subfamily IIIA) phosphatase K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D Spaf_2083 hypothetical protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D Spaf_1915 tatD; TatD family hydrolasease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Spaf_1914 rnmV; primase-related protein K05985 rnmV; ribonuclease M5 [EC:3.1.26.8]
D Spaf_1727 dexB; glucan 1,6-alpha-glucosidase K01215 dexB; glucan 1,6-alpha-glucosidase [EC:3.2.1.70]
D Spaf_0721 dacC3; DD-carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D Spaf_0361 dacC; D-alanyl-D-alanine carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D Spaf_1680 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Spaf_0413 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Spaf_0817 Peptidoglycan N-acetylglucosamine deacetylase A K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Spaf_0768 tdcF; endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Spaf_0600 hypothetical protein K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
D Spaf_0448 tcrB; TrcB K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D Spaf_1432 calcium transporter P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Spaf_1547 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
D Spaf_1522 yfgQ; cation-transporting ATPase yfgQ K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
D Spaf_0702 P-type ATPase-metal cation transport K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D Spaf_1538 acuB; acetoin utilization putative/CBS domain-containing protein K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D Spaf_0526 nifU; NifU family protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D Spaf_0793 Oxidoreductase, pyridine nucleotide-disulfide K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
D Spaf_1154 hypothetical protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D Spaf_0614 hypothetical protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
D Spaf_2043 nrdI; ribonucleotide-diphosphate reductase subunit gamma K03647 nrdI; protein involved in ribonucleotide reduction
D Spaf_0751 hypothetical protein K15051 endA; DNA-entry nuclease
D Spaf_1054 hypothetical protein K15051 endA; DNA-entry nuclease
D Spaf_0898 deoxyribonuclease K15051 endA; DNA-entry nuclease
C 99985 Amino acid metabolism
D Spaf_1523 glyoxylase family protein K08234 yaeR; glyoxylase I family protein
D Spaf_0588 PyridoxaL 5'-phosphate Dependent Enzymes class III K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Spaf_0796 arsC; Arsenate reductase, glutaredoxin family K16509 spxA; regulatory protein spx
D Spaf_2030 transcriptional regulator Spx K16509 spxA; regulatory protein spx
D Spaf_1467 toxin expression - transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D Spaf_0236 hypothetical protein K07570 GSP13; general stress protein 13
C 99975 Protein processing
D Spaf_0477 trigger factor K03545 tig; trigger factor
D Spaf_1498 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D Spaf_0732 nrdH; Glutaredoxin-like protein, putative K06191 nrdH; glutaredoxin-like protein NrdH
D Spaf_0520 adaptor protein K16511 mecA1_2; adapter protein MecA 1/2
C 99976 Replication and repair
D Spaf_0980 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D Spaf_1906 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D Spaf_0370 Endonuclease III-related protein K07457 K07457; endonuclease III related protein
D Spaf_0700 hypothetical protein K07461 K07461; putative endonuclease
D Spaf_1071 DNA processing Smf protein K04096 smf; DNA processing protein
D Spaf_1360 dnaD; DnaD domain protein K02086 dnaD; DNA replication protein
D Spaf_1848 Cro/CI family transcriptional regulator K07467 nicK; putative DNA relaxase
D Spaf_0330 Chromosome segregation helicase K07478 ycaJ; putative ATPase
D Spaf_0015 transposase K07482 K07482; transposase, IS30 family
D Spaf_0213 transposase K07482 K07482; transposase, IS30 family
D Spaf_0994 hypothetical protein K07483 K07483; transposase
D Spaf_0149 transposase K07483 K07483; transposase
D Spaf_1991 transposase K07483 K07483; transposase
D Spaf_1486 transposase K07483 K07483; transposase
D Spaf_1996 transposase K07485 K07485; transposase
D Spaf_1571 degenerate transposase K07485 K07485; transposase
D Spaf_0019 Transposase K07486 K07486; transposase
D Spaf_0981 Transposase K07486 K07486; transposase
D Spaf_0095 Transposase K07486 K07486; transposase
D Spaf_1968 transposase K07486 K07486; transposase
D Spaf_0254 Transposase K07486 K07486; transposase
D Spaf_0633 Transposase K07486 K07486; transposase
D Spaf_1601 transposase K07486 K07486; transposase
D Spaf_0696 Transposase K07486 K07486; transposase
D Spaf_1962 IS200 family transposase K07491 rayT; REP-associated tyrosine transposase
D Spaf_1205 transposase of IS200 family K07491 rayT; REP-associated tyrosine transposase
D Spaf_1460 IS200 family transposase K07491 rayT; REP-associated tyrosine transposase
D Spaf_1494 IS200 family transposase K07491 rayT; REP-associated tyrosine transposase
D Spaf_1992 integrase core subunit K07497 K07497; putative transposase
D Spaf_1487 integrase core subunit K07497 K07497; putative transposase
D Spaf_0993 putative transposase, ISSmu1 K07497 K07497; putative transposase
D Spaf_0148 integrase core subunit K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D Spaf_1836 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Spaf_0198 D-Serine/D-alanine/glycine:H+ symporter K03293 TC.AAT; amino acid transporter, AAT family
D Spaf_0661 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D Spaf_1808 putative sodium/amino acid (alanine) symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D Spaf_1006 Branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
C 99978 Cell growth
D Spaf_0220 hypothetical protein K20073 mapZ; mid-cell-anchored protein Z
D Spaf_1918 hypothetical protein K06346 jag; spoIIIJ-associated protein
D Spaf_1655 hypothetical protein K06349 kbaA; KinB signaling pathway activation protein
D Spaf_0493 cbxX/cfqX family protein K06413 spoVK; stage V sporulation protein K
C 99993 Cell motility
C 99995 Signaling proteins
D Spaf_0581 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D Spaf_0459 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D Spaf_1511 phoH; phoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D Spaf_1442 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) K07273 acm; lysozyme
D Spaf_1228 hypothetical protein K21463 tcaA; membrane-associated protein TcaA
C 99994 Others
D Spaf_0805 phoU; Phosphate transport system regulatory protein K02039 phoU; phosphate transport system protein
D Spaf_1214 cutC; Copper sensitivity K06201 cutC; copper homeostasis protein
D Spaf_0088 hypothetical protein K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Spaf_0724 coiA; Competence protein K06198 coiA; competence protein CoiA
D Spaf_0303 hypothetical protein K06878 K06878; tRNA-binding protein
D Spaf_1183 putative hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D Spaf_0527 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D Spaf_0524 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D Spaf_0848 Ribonuclease BN K07058 K07058; membrane protein
D Spaf_1637 hypothetical protein K07146 K07146; UPF0176 protein
D Spaf_1627 lemA2; LemA family protein K03744 lemA; LemA protein
D Spaf_1078 lemA; LemA family protein K03744 lemA; LemA protein
D Spaf_2073 integral membrane protein K01421 yhgE; putative membrane protein
D Spaf_1470 substrate-binding transport protein K08986 ycgQ; putative membrane protein
D Spaf_0104 hypothetical protein K08987 K08987; putative membrane protein
D Spaf_1182 phnA; PhnA protein, putative K06193 phnA; protein PhnA
C 99997 Function unknown
D Spaf_1971 putative transcriptional regulator K06871 K06871; uncharacterized protein
D Spaf_1871 hypothetical protein K06871 K06871; uncharacterized protein
D Spaf_1434 hypothetical protein K06885 K06885; uncharacterized protein
D Spaf_1745 hypothetical protein K06889 K06889; uncharacterized protein
D Spaf_1595 integral membrane protein, receptor K06890 K06890; uncharacterized protein
D Spaf_0115 CoA-binding domain-containing protein K06929 K06929; uncharacterized protein
D Spaf_1169 Fe-S-cluster oxidoreductase K06940 K06940; uncharacterized protein
D Spaf_1286 metal-dependent phosphohydrolase K06950 K06950; uncharacterized protein
D Spaf_1596 HD superfamily metal-dependent phosphohydrolase K06950 K06950; uncharacterized protein
D Spaf_1166 RNA-binding protein K06960 K06960; uncharacterized protein
D Spaf_0443 putative cytosolic protein K06962 K06962; uncharacterized protein
D Spaf_1557 extracellular nuclease, putative K07004 K07004; uncharacterized protein
D Spaf_1998 zinc proteinase K07054 K07054; uncharacterized protein
D Spaf_1469 permease K07089 K07089; uncharacterized protein
D Spaf_1590 phosphodiesterase K07095 K07095; uncharacterized protein
D Spaf_1369 oxidoreductase, short chain dehydrogenase K07124 K07124; uncharacterized protein
D Spaf_1578 hypothetical protein K07139 K07139; uncharacterized protein
D Spaf_1795 membrane protein K07150 K07150; uncharacterized protein
D Spaf_1584 hypothetical protein K08998 K08998; uncharacterized protein
D Spaf_0540 hypothetical protein K09155 K09155; uncharacterized protein
D Spaf_0460 hypothetical protein K09157 K09157; uncharacterized protein
D Spaf_0256 hypothetical protein K09704 K09704; uncharacterized protein
D Spaf_1046 hypothetical protein K09787 K09787; uncharacterized protein
D Spaf_1477 hypothetical protein K09790 K09790; uncharacterized protein
D Spaf_1514 hypothetical protein K00243 K00243; uncharacterized protein
D Spaf_1206 hypothetical protein K09861 K09861; uncharacterized protein
D Spaf_0909 hypothetical protein K09925 K09925; uncharacterized protein
D Spaf_0054 hypothetical protein K09962 K09962; uncharacterized protein
D Spaf_1720 hypothetical protein K09975 K09975; uncharacterized protein
D Spaf_1593 hypothetical protein K09976 K09976; uncharacterized protein
D Spaf_1264 ribosomal protein K07584 ysxB; uncharacterized protein
D Spaf_0535 hypothetical protein K07586 ygaC; uncharacterized protein
D Spaf_0186 hypothetical protein K07742 ylxR; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 18, 2024