+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Schizophyllum commune</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        SCHCO_02606534 SCHCODRAFT_02606534; uncharacterized protein	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        SCHCO_02629921 SCHCODRAFT_02629921; Pkinase-domain-containing protein	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        SCHCO_02618278 SCHCODRAFT_02618278; Pkinase-domain-containing protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        SCHCO_02015055 SCHCODRAFT_02015055; mRNA capping enzyme, alpha subunit	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
E        SCHCO_02616059 SCHCODRAFT_02616059; mRNA triphosphatase CET1	K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74] 
D      Cap binding complex
E        SCHCO_02645961 SCHCODRAFT_02645961; uncharacterized protein	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        SCHCO_02606234 SCHCODRAFT_02606234; RNA-binding domain-containing protein	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        SCHCO_02629417 SCHCODRAFT_02629417; cleavage and polyadenylation specificity factor, 25 kDa subunit	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        SCHCO_02484365 SCHCODRAFT_02484365; uncharacterized protein	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        SCHCO_02566622 SCHCODRAFT_02566622; uncharacterized protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        SCHCO_02500640 SCHCODRAFT_02500640; uncharacterized protein	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        SCHCO_02623046 SCHCODRAFT_02623046; uncharacterized protein	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        SCHCO_02691379 SCHCODRAFT_02691379; Metallo-hydrolase/oxidoreductase	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        SCHCO_02017472 SCHCODRAFT_02017472; uncharacterized protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        SCHCO_02663071 SCHCODRAFT_02663071; uncharacterized protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        SCHCO_02613522 SCHCODRAFT_02613522; Fip1-domain-containing protein	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        SCHCO_02301738 SCHCODRAFT_02301738; WD40 repeat-like protein	K14962 WDR82; COMPASS component SWD2 
E        SCHCO_01340209 SCHCODRAFT_01340209; serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        SCHCO_02611527 SCHCODRAFT_02611527; phosphoprotein phosphatase PPZ	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        SCHCO_012799 SCHCODRAFT_012799; Ssu72-like protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        SCHCO_02610305 SCHCODRAFT_02610305; uncharacterized protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        SCHCO_02678789 SCHCODRAFT_02678789; uncharacterized protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        SCHCO_02521778 SCHCODRAFT_02521778; Suf-domain-containing protein	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        SCHCO_02617748 SCHCODRAFT_02617748; uncharacterized protein	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        SCHCO_02617511 SCHCODRAFT_02617511; Sm-like ribonucleoprotein	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        SCHCO_02634738 SCHCODRAFT_02634738; Sm-like ribonucleoprotein	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        SCHCO_02609610 SCHCODRAFT_02609610; Sm-like ribonucleoprotein	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        SCHCO_02623787 SCHCODRAFT_02623787; small nuclear ribo protein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        SCHCO_02498383 SCHCODRAFT_02498383; like-Sm ribonucleoprotein	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        SCHCO_02623046 SCHCODRAFT_02623046; uncharacterized protein	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        SCHCO_02691379 SCHCODRAFT_02691379; Metallo-hydrolase/oxidoreductase	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        SCHCO_02610305 SCHCODRAFT_02610305; uncharacterized protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        SCHCO_02678789 SCHCODRAFT_02678789; uncharacterized protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        SCHCO_02617748 SCHCODRAFT_02617748; uncharacterized protein	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        SCHCO_02645895 SCHCODRAFT_02645895; transcription initiation Spt4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        SCHCO_02505644 SCHCODRAFT_02505644; transcription elongation factor Spt5	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        SCHCO_01115185 SCHCODRAFT_01115185; MT-A70-domain-containing protein	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        SCHCO_02645113 SCHCODRAFT_02645113; MT-A70-domain-containing protein	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        SCHCO_02639553 SCHCODRAFT_02639553; uncharacterized protein	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
D      Poly(A) addition factors
E        SCHCO_01165873 SCHCODRAFT_01165873; Poly(A) polymerase	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        SCHCO_02626448 SCHCODRAFT_02626448; Poly(A) polymerase	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        SCHCO_02530778 SCHCODRAFT_02530778; uncharacterized protein	K13192 RBM26; RNA-binding protein 26 
C    Other processing factors
D      SCHCO_02685882 SCHCODRAFT_02685882; uncharacterized protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      SCHCO_02624440 SCHCODRAFT_02624440; uncharacterized protein	K27103 SRRT; serrate RNA effector molecule 
D      SCHCO_02631232 SCHCODRAFT_02631232; uncharacterized protein	K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        SCHCO_02618639 SCHCODRAFT_02618639; RNA-binding domain-containing protein	K12876 RBM8A; RNA-binding protein 8A 
E        SCHCO_02688704 SCHCODRAFT_02688704; Mago nashi protein	K12877 MAGOH; protein mago nashi 
E        SCHCO_02640902 SCHCODRAFT_02640902; uncharacterized protein	K12881 THOC4; THO complex subunit 4 
E        SCHCO_02641156 SCHCODRAFT_02641156; uncharacterized protein	K12881 THOC4; THO complex subunit 4 
E        SCHCO_02743816 SCHCODRAFT_02743816; P-loop containing nucleoside triphosphate hydrolase protein	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        SCHCO_02623214 SCHCODRAFT_02623214; DEAD-domain-containing protein	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        SCHCO_02578830 SCHCODRAFT_02578830; uncharacterized protein	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        SCHCO_0255173 SCHCODRAFT_0255173; uncharacterized protein	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
D      TREX complex
E        SCHCO_02498316 SCHCODRAFT_02498316; uncharacterized protein	K12879 THOC2; THO complex subunit 2 
E        SCHCO_02622520 SCHCODRAFT_02622520; WD40 repeat-like protein	K12880 THOC3; THO complex subunit 3 
E        SCHCO_02640902 SCHCODRAFT_02640902; uncharacterized protein	K12881 THOC4; THO complex subunit 4 
E        SCHCO_02641156 SCHCODRAFT_02641156; uncharacterized protein	K12881 THOC4; THO complex subunit 4 
E        SCHCO_02621295 SCHCODRAFT_02621295; uncharacterized protein	K13174 THOC5; THO complex subunit 5 
E        SCHCO_02251848 SCHCODRAFT_02251848; uncharacterized protein	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        SCHCO_02642891 SCHCODRAFT_02642891; uncharacterized protein	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        SCHCO_02638685 SCHCODRAFT_02638685; uncharacterized protein	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        SCHCO_02644585 SCHCODRAFT_02644585; uncharacterized protein	K16466 CETN3; centrin-3 
D      Nuclear pore complex
E        SCHCO_02642912 SCHCODRAFT_02642912; WD40 repeat-like protein	K14298 RAE1; mRNA export factor 
E        SCHCO_02630071 SCHCODRAFT_02630071; WD40 repeat-like protein	K14004 SEC13; protein transport protein SEC13 
E        SCHCO_02618667 SCHCODRAFT_02618667; uncharacterized protein	K14304 NUP85; nuclear pore complex protein Nup85 
E        SCHCO_02580451 SCHCODRAFT_02580451; uncharacterized protein	K14308 NUP54; nuclear pore complex protein Nup54 
E        SCHCO_02617838 SCHCODRAFT_02617838; NIC-domain-containing protein	K14309 NUP93; nuclear pore complex protein Nup93 
E        SCHCO_02629191 SCHCODRAFT_02629191; uncharacterized protein	K14301 NUP107; nuclear pore complex protein Nup107 
E        SCHCO_02632498 SCHCODRAFT_02632498; uncharacterized protein	K14300 NUP133; nuclear pore complex protein Nup133 
E        SCHCO_02501492 SCHCODRAFT_02501492; uncharacterized protein	K14311 NUP188; nuclear pore complex protein Nup188 
E        SCHCO_02744705 SCHCODRAFT_02744705; nucleoporin-domain-containing protein	K14312 NUP155; nuclear pore complex protein Nup155 
E        SCHCO_02577396 SCHCODRAFT_02577396; uncharacterized protein	K14303 NUP160; nuclear pore complex protein Nup160 
E        SCHCO_02070248 SCHCODRAFT_02070248; uncharacterized protein	K14310 NUP205; nuclear pore complex protein Nup205 
E        SCHCO_02627385 SCHCODRAFT_02627385; uncharacterized protein	K14307 NUPL1; nucleoporin p58/p45 
E        SCHCO_02644072 SCHCODRAFT_02644072; uncharacterized protein	K14315 NDC1; nucleoporin NDC1 
E        SCHCO_02642318 SCHCODRAFT_02642318; WD40 repeat-like protein	K14299 SEH1; nucleoporin SEH1 
E        SCHCO_02502419 SCHCODRAFT_02502419; uncharacterized protein	K18715 NUP159; nucleoporin NUP159 
E        SCHCO_02623483 SCHCODRAFT_02623483; uncharacterized protein	K18719 NUP82; nucleoporin NUP82 
E        SCHCO_02483680 SCHCODRAFT_02483680; uncharacterized protein	K18721 NUP1; nucleoporin NUP1 
E        SCHCO_02632244 SCHCODRAFT_02632244; uncharacterized protein	K18722 NUP2; nucleoporin NUP2 
E        SCHCO_02644585 SCHCODRAFT_02644585; uncharacterized protein	K16466 CETN3; centrin-3 
E        SCHCO_02642174 SCHCODRAFT_02642174; uncharacterized protein	K18723 GLE1; nucleoporin GLE1 
E        SCHCO_02627251 SCHCODRAFT_02627251; NTF2-like protein	K14284 NXF; nuclear RNA export factor 
E        SCHCO_02611036 SCHCODRAFT_02611036; NTF2-like protein	K14285 NXT1_2; NTF2-related export protein 1/2 
E        SCHCO_02662940 SCHCODRAFT_02662940; uncharacterized protein	K18725 POM152; nucleoporin POM152 
D      Ran-mediated transport factors
E        SCHCO_02605647 SCHCODRAFT_02605647; GTP-binding nuclear protein	K07936 RAN; GTP-binding nuclear protein Ran 
E        SCHCO_02606937 SCHCODRAFT_02606937; uncharacterized protein	K18726 FAF2; FAS-associated factor 2 
E        SCHCO_02620059 SCHCODRAFT_02620059; AAA ATPase	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        SCHCO_02481563 SCHCODRAFT_02481563; uncharacterized protein	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        SCHCO_01210304 SCHCODRAFT_01210304; uncharacterized protein	K14290 XPO1; exportin-1 
E        SCHCO_02616866 SCHCODRAFT_02616866; RNI-like protein	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        SCHCO_01081219 SCHCODRAFT_01081219; translation initiation factor eIF4e	K03259 EIF4E; translation initiation factor 4E 
E        SCHCO_02617574 SCHCODRAFT_02617574; translation initiation factor eIF4e	K03259 EIF4E; translation initiation factor 4E 
E        SCHCO_02678079 SCHCODRAFT_02678079; translation initiation factor eIF4e	K03259 EIF4E; translation initiation factor 4E 
E        SCHCO_02043077 SCHCODRAFT_02043077; DEAD-domain-containing protein	K03257 EIF4A; translation initiation factor 4A 
E        SCHCO_02509143 SCHCODRAFT_02509143; uncharacterized protein	K03260 EIF4G; translation initiation factor 4G 
E        SCHCO_02625871 SCHCODRAFT_02625871; uncharacterized protein	K03258 EIF4B; translation initiation factor 4B 
E        SCHCO_01282735 SCHCODRAFT_01282735; DEAD-domain-containing protein	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        SCHCO_02609481 SCHCODRAFT_02609481; uncharacterized protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        SCHCO_02318824 SCHCODRAFT_02318824; polyadenylate binding protein	K13126 PABPC; polyadenylate-binding protein 
E        SCHCO_02516538 SCHCODRAFT_02516538; uncharacterized protein	K13126 PABPC; polyadenylate-binding protein 
E        SCHCO_02604934 SCHCODRAFT_02604934; uncharacterized protein	K13126 PABPC; polyadenylate-binding protein 
E        SCHCO_02490005 SCHCODRAFT_02490005; antiviral helicase	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        SCHCO_02498745 SCHCODRAFT_02498745; Sec63-domain-containing protein	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        SCHCO_02606417 SCHCODRAFT_02606417; uncharacterized protein	K07575 MCTS; malignant T-cell-amplified sequence 
E        SCHCO_02620727 SCHCODRAFT_02620727; density-regulated protein DRP1	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        SCHCO_02624203 SCHCODRAFT_02624203; uncharacterized protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        SCHCO_02621814 SCHCODRAFT_02621814; uncharacterized protein	K06965 PELO; protein pelota 
E        SCHCO_02701711 SCHCODRAFT_02701711; P-loop containing nucleoside triphosphate hydrolase protein	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        SCHCO_02607249 SCHCODRAFT_02607249; protein prenylyltransferase	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        SCHCO_02506852 SCHCODRAFT_02506852; uncharacterized protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        SCHCO_02500037 SCHCODRAFT_02500037; RCC1/BLIP-II	K11493 RCC1; regulator of chromosome condensation 
E        SCHCO_015246 SCHCODRAFT_015246; uncharacterized protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        SCHCO_02005419 SCHCODRAFT_02005419; uncharacterized protein	K03265 ETF1; peptide chain release factor subunit 1 
E        SCHCO_02621700 SCHCODRAFT_02621700; uncharacterized protein	K03267 ERF3; peptide chain release factor subunit 3 
E        SCHCO_02506351 SCHCODRAFT_02506351; uncharacterized protein	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        SCHCO_02543025 SCHCODRAFT_02543025; protein phosphatase 2A	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        SCHCO_02611649 SCHCODRAFT_02611649; ARM repeat-containing protein	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        SCHCO_02494378 SCHCODRAFT_02494378; protein phosphatase 2A regulatory subunit PR55	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        SCHCO_02605926 SCHCODRAFT_02605926; protein phosphatase 2A regulatory B subunit	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        SCHCO_02606648 SCHCODRAFT_02606648; uncharacterized protein	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        SCHCO_02609481 SCHCODRAFT_02609481; uncharacterized protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        SCHCO_02634209 SCHCODRAFT_02634209; P-loop containing nucleoside triphosphate hydrolase protein	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        SCHCO_02642080 SCHCODRAFT_02642080; ARM repeat-containing protein	K14844 PUF6; pumilio homology domain family member 6 
E        SCHCO_02485606 SCHCODRAFT_02485606; eukaryotic type KH-domain (KH-domain type I)	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        SCHCO_02566039 SCHCODRAFT_02566039; uncharacterized protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        SCHCO_02606752 SCHCODRAFT_02606752; uncharacterized protein	K10357 MYO5; myosin V 
E        SCHCO_070377 SCHCODRAFT_070377; uncharacterized protein	K10357 MYO5; myosin V 
E        SCHCO_02580737 SCHCODRAFT_02580737; uncharacterized protein	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        SCHCO_02611788 SCHCODRAFT_02611788; translation elongation factor 1a	K03231 EEF1A; elongation factor 1-alpha 
E        SCHCO_02078086 SCHCODRAFT_02078086; eEF1-gamma domain-containing protein	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        SCHCO_01113856 SCHCODRAFT_01113856; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_01113897 SCHCODRAFT_01113897; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_01125396 SCHCODRAFT_01125396; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_02507693 SCHCODRAFT_02507693; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_0257069 SCHCODRAFT_0257069; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_02607400 SCHCODRAFT_02607400; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_02615066 SCHCODRAFT_02615066; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_02616119 SCHCODRAFT_02616119; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_02629384 SCHCODRAFT_02629384; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_02695509 SCHCODRAFT_02695509; Piwi-domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        SCHCO_01081219 SCHCODRAFT_01081219; translation initiation factor eIF4e	K03259 EIF4E; translation initiation factor 4E 
E        SCHCO_02617574 SCHCODRAFT_02617574; translation initiation factor eIF4e	K03259 EIF4E; translation initiation factor 4E 
E        SCHCO_02678079 SCHCODRAFT_02678079; translation initiation factor eIF4e	K03259 EIF4E; translation initiation factor 4E 
E        SCHCO_01282735 SCHCODRAFT_01282735; DEAD-domain-containing protein	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        SCHCO_02705705 SCHCODRAFT_02705705; DEAD-domain-containing protein	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        SCHCO_02637347 SCHCODRAFT_02637347; P-loop containing nucleoside triphosphate hydrolase protein	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        SCHCO_070379 SCHCODRAFT_070379; P-loop containing nucleoside triphosphate hydrolase protein	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        SCHCO_02702745 SCHCODRAFT_02702745; ARM repeat-containing protein	K18752 TNPO1; transportin-1 
E        SCHCO_02606648 SCHCODRAFT_02606648; uncharacterized protein	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        SCHCO_02588966 SCHCODRAFT_02588966; kinase-like protein	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        SCHCO_02630814 SCHCODRAFT_02630814; camp-dependent protein kinase A catalytic subunit	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        SCHCO_01132403 SCHCODRAFT_01132403; uncharacterized protein	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        SCHCO_02611046 SCHCODRAFT_02611046; Sm-like ribonucleoprotein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        SCHCO_02635036 SCHCODRAFT_02635036; U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        SCHCO_02263073 SCHCODRAFT_02263073; like-Sm ribonucleoprotein	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        SCHCO_02631046 SCHCODRAFT_02631046; Sm-like ribonucleoprotein	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        SCHCO_02612117 SCHCODRAFT_02612117; Sm-like ribonucleoprotein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        SCHCO_02505232 SCHCODRAFT_02505232; LSM-domain-containing protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        SCHCO_02638741 SCHCODRAFT_02638741; U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        SCHCO_01356221 SCHCODRAFT_01356221; Sm-like ribonucleoprotein	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        SCHCO_02606752 SCHCODRAFT_02606752; uncharacterized protein	K10357 MYO5; myosin V 
E        SCHCO_070377 SCHCODRAFT_070377; uncharacterized protein	K10357 MYO5; myosin V 
E        SCHCO_02498526 SCHCODRAFT_02498526; tubulin alpha-1B chain	K07374 TUBA; tubulin alpha 
E        SCHCO_02623036 SCHCODRAFT_02623036; tubulin alpha-1A chain	K07374 TUBA; tubulin alpha 
E        SCHCO_02481913 SCHCODRAFT_02481913; Not1-domain-containing protein	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        SCHCO_02614346 SCHCODRAFT_02614346; uncharacterized protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        SCHCO_02560302 SCHCODRAFT_02560302; uncharacterized protein	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        SCHCO_058593 SCHCODRAFT_058593; uncharacterized protein	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        SCHCO_02616112 SCHCODRAFT_02616112; CAF1-domain-containing protein	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        SCHCO_02560356 SCHCODRAFT_02560356; uncharacterized protein	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        SCHCO_02589195 SCHCODRAFT_02589195; uncharacterized protein	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        SCHCO_083696 SCHCODRAFT_083696; uncharacterized protein	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        SCHCO_02506351 SCHCODRAFT_02506351; uncharacterized protein	K14328 UPF3; regulator of nonsense transcripts 3 
E        SCHCO_02620320 SCHCODRAFT_02620320; uncharacterized protein	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Stress granule specific factors
E        SCHCO_02697207 SCHCODRAFT_02697207; RNA-binding domain-containing protein	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        SCHCO_02318824 SCHCODRAFT_02318824; polyadenylate binding protein	K13126 PABPC; polyadenylate-binding protein 
E        SCHCO_02516538 SCHCODRAFT_02516538; uncharacterized protein	K13126 PABPC; polyadenylate-binding protein 
E        SCHCO_02604934 SCHCODRAFT_02604934; uncharacterized protein	K13126 PABPC; polyadenylate-binding protein 
E        SCHCO_01175542 SCHCODRAFT_01175542; uncharacterized protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        SCHCO_02603891 SCHCODRAFT_02603891; translation initiation factor eIF-2A	K15026 EIF2A; translation initiation factor 2A 
E        SCHCO_02609676 SCHCODRAFT_02609676; translation initiation factor eIF-3b	K03253 EIF3B; translation initiation factor 3 subunit B 
E        SCHCO_02043077 SCHCODRAFT_02043077; DEAD-domain-containing protein	K03257 EIF4A; translation initiation factor 4A 
E        SCHCO_02623214 SCHCODRAFT_02623214; DEAD-domain-containing protein	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        SCHCO_02625871 SCHCODRAFT_02625871; uncharacterized protein	K03258 EIF4B; translation initiation factor 4B 
E        SCHCO_02509143 SCHCODRAFT_02509143; uncharacterized protein	K03260 EIF4G; translation initiation factor 4G 
E        SCHCO_02635391 SCHCODRAFT_02635391; guanine nucleotide binding protein beta subunit	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        SCHCO_02627251 SCHCODRAFT_02627251; NTF2-like protein	K14284 NXF; nuclear RNA export factor 
E        SCHCO_02691268 SCHCODRAFT_02691268; uncharacterized protein	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        SCHCO_02705705 SCHCODRAFT_02705705; DEAD-domain-containing protein	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        SCHCO_083696 SCHCODRAFT_083696; uncharacterized protein	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        SCHCO_02611046 SCHCODRAFT_02611046; Sm-like ribonucleoprotein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        SCHCO_02635036 SCHCODRAFT_02635036; U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        SCHCO_02263073 SCHCODRAFT_02263073; like-Sm ribonucleoprotein	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        SCHCO_02631046 SCHCODRAFT_02631046; Sm-like ribonucleoprotein	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        SCHCO_02612117 SCHCODRAFT_02612117; Sm-like ribonucleoprotein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        SCHCO_02505232 SCHCODRAFT_02505232; LSM-domain-containing protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        SCHCO_02638741 SCHCODRAFT_02638741; U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        SCHCO_01356221 SCHCODRAFT_01356221; Sm-like ribonucleoprotein	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
D      Other 5'-3' decay factors
E        SCHCO_02636681 SCHCODRAFT_02636681; HIT-like protein	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        SCHCO_02609798 SCHCODRAFT_02609798; uncharacterized protein	K07573 CSL4; exosome complex component CSL4 
E        SCHCO_02492108 SCHCODRAFT_02492108; uncharacterized protein	K03679 RRP4; exosome complex component RRP4 
E        SCHCO_02642097 SCHCODRAFT_02642097; uncharacterized protein	K11600 RRP41; exosome complex component RRP41 
E        SCHCO_02605264 SCHCODRAFT_02605264; ribosomal protein S5 domain 2-like protein	K12587 MTR3; exosome complex component MTR3 
E        SCHCO_02735894 SCHCODRAFT_02735894; ribosomal protein S5 domain 2-like protein	K12589 RRP42; exosome complex component RRP42 
E        SCHCO_02620271 SCHCODRAFT_02620271; uncharacterized protein	K12586 RRP43; exosome complex component RRP43 
E        SCHCO_02686111 SCHCODRAFT_02686111; ribosomal protein S5 domain 2-like protein	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        SCHCO_02489744 SCHCODRAFT_02489744; uncharacterized protein	K12592 C1D; exosome complex protein LRP1 
E        SCHCO_02752315 SCHCODRAFT_02752315; P-loop containing nucleoside triphosphate hydrolase protein	K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] 
E        SCHCO_02752321 SCHCODRAFT_02752321; P-loop containing nucleoside triphosphate hydrolase protein	K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] 
D      TRAMP complex
E        SCHCO_02608447 SCHCODRAFT_02608447; uncharacterized protein	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        SCHCO_02753665 SCHCODRAFT_02753665; Nucleotidyltransferase	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        SCHCO_02484574 SCHCODRAFT_02484574; antiviral helicase	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        SCHCO_02490005 SCHCODRAFT_02490005; antiviral helicase	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        SCHCO_02511160 SCHCODRAFT_02511160; TPR-like protein	K12600 SKI3; superkiller protein 3 
E        SCHCO_02608038 SCHCODRAFT_02608038; WD40 repeat-like protein	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        SCHCO_058593 SCHCODRAFT_058593; uncharacterized protein	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        SCHCO_02481913 SCHCODRAFT_02481913; Not1-domain-containing protein	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        SCHCO_02614346 SCHCODRAFT_02614346; uncharacterized protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        SCHCO_02560302 SCHCODRAFT_02560302; uncharacterized protein	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        SCHCO_02616112 SCHCODRAFT_02616112; CAF1-domain-containing protein	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        SCHCO_02618182 SCHCODRAFT_02618182; Rcd1-domain-containing protein	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        SCHCO_02621549 SCHCODRAFT_02621549; P-loop containing nucleoside triphosphate hydrolase protein	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        SCHCO_02643110 SCHCODRAFT_02643110; uncharacterized protein	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
D      Pan complex
E        SCHCO_02560356 SCHCODRAFT_02560356; uncharacterized protein	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        SCHCO_02589195 SCHCODRAFT_02589195; uncharacterized protein	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        SCHCO_02606572 SCHCODRAFT_02606572; uncharacterized protein	K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-] 
E        SCHCO_02636681 SCHCODRAFT_02636681; HIT-like protein	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        SCHCO_02611948 SCHCODRAFT_02611948; DUF1740-domain-containing protein	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        SCHCO_02614489 SCHCODRAFT_02614489; uncharacterized protein	K27407 VTS1; RNA-binding protein VTS1 
E        SCHCO_02634180 SCHCODRAFT_02634180; uncharacterized protein	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        SCHCO_02631387 SCHCODRAFT_02631387; ribonuclease H-like protein	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        SCHCO_02613683 SCHCODRAFT_02613683; enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        SCHCO_02625516 SCHCODRAFT_02625516; 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        SCHCO_02630968 SCHCODRAFT_02630968; heat shock protein 70	K04043 dnaK; molecular chaperone DnaK 
E        SCHCO_02580691 SCHCODRAFT_02580691; chaperonin GroL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        SCHCO_02492108 SCHCODRAFT_02492108; uncharacterized protein	K03679 RRP4; exosome complex component RRP4 
E        SCHCO_02609798 SCHCODRAFT_02609798; uncharacterized protein	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        SCHCO_02642097 SCHCODRAFT_02642097; uncharacterized protein	K11600 RRP41; exosome complex component RRP41 
E        SCHCO_02735894 SCHCODRAFT_02735894; ribosomal protein S5 domain 2-like protein	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
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#Last updated: April 25, 2024