+E Transcription factors KO
#
Transcription Factors - Streptomyces sp. CdTB01
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D AS200_28075 DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AS200_28080 5-methylcytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D AS200_44970 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D AS200_06330 AraC family transcriptional regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D AS200_02260 transcriptional regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D AS200_10885 DNA-3-methyladenine glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D AS200_11570 AraC family transcriptional regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D AS200_42905 AraC family transcriptional regulator K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D AS200_00625 transcriptional regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D AS200_41010 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
C DeoR family
D AS200_39120 alkaline phosphatase K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D AS200_26330 D-beta-D-heptose 1-phosphate adenosyltransferase K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D AS200_33695 transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D AS200_42185 transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D AS200_00340 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_03390 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_28610 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_28650 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_36895 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_24770 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_08395 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_06710 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_38435 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_30285 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_38640 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_41850 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_07105 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_33320 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AS200_03080 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D AS200_31670 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D AS200_35260 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D AS200_20030 LacI family transcriptional regulator K17640 bxlR; LacI family transcriptional regulator, xylobiose transport system transcriptional regulator
C GntR family
D AS200_17575 GntR family transcriptional regulator K24969 dasR; GntR family transcriptional regulator, nutrient-sensing system regulator
D AS200_45540 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AS200_05460 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AS200_42080 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AS200_45285 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AS200_43095 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AS200_08480 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AS200_07070 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AS200_02035 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AS200_01885 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AS200_35160 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AS200_07900 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AS200_40955 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AS200_23835 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AS200_15850 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AS200_33170 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AS200_19585 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D AS200_37345 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D AS200_03060 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D AS200_19335 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D AS200_06280 TetR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D AS200_30155 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AS200_08890 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AS200_38665 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AS200_39175 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D AS200_35775 TetR family transcriptional regulator K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor
D AS200_31085 TetR family transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D AS200_32855 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D AS200_42620 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D AS200_41375 AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D AS200_13900 AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D AS200_37295 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AS200_21100 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AS200_36530 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D AS200_11420 helix-turn-helix transcriptional regulator K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism
D AS200_35365 helix-turn-helix transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D AS200_10370 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D AS200_09255 DNA-binding protein K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D AS200_06095 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D AS200_27490 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D AS200_40430 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D AS200_06945 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D AS200_15070 hypothetical protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AS200_00790 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AS200_14270 heavy metal-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AS200_44455 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AS200_15135 hypothetical protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AS200_34905 transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D AS200_22600 heat-shock protein HspR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D AS200_21840 transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D AS200_04955 transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D AS200_40510 transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D AS200_24840 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AS200_30025 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AS200_12645 Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D AS200_17800 Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D AS200_11255 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AS200_26275 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D AS200_30445 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D AS200_22215 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
D AS200_31605 transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D AS200_42220 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AS200_09735 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AS200_42230 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AS200_14960 ArsR family transcriptional regulator K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D AS200_44520 hypothetical protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D AS200_10890 hypothetical protein K21886 nmtR; ArsR family transcriptional regulator, nickel/cobalt-responsive transcriptional repressor
D AS200_22930 MarR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D AS200_44470 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D AS200_44685 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D AS200_13245 XRE family transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
C Other families
D AS200_25805 dihydrofolate reductase K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D AS200_19110 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D AS200_27730 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D AS200_36825 adenylate kinase K02019 modE; molybdate transport system regulatory protein
D AS200_21400 REX family transcriptional regulator K01926 rex; redox-sensing transcriptional repressor
D AS200_00165 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D AS200_18570 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_17530 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_22245 transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_27280 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_19940 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_40995 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_45270 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_42455 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_04280 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_09215 transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_17900 DNA-binding protein K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D AS200_01620 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D AS200_15180 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D AS200_17050 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D AS200_14720 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D AS200_14640 CopY family transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D AS200_24680 transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D AS200_21135 transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D AS200_34425 transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D AS200_11025 PucR family transcriptional regulator K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D AS200_01475 hypothetical protein K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D AS200_01500 hypothetical protein K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D AS200_02825 hypothetical protein K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D AS200_23480 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AS200_44350 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AS200_45125 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AS200_25045 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D AS200_35715 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D AS200_29725 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D AS200_12500 PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D AS200_09955 PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D AS200_38245 PaaX domain-containing protein, C-domain protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D AS200_36245 uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D AS200_36970 transcriptional regulator K07734 paiB; transcriptional regulator
D AS200_27680 hypothetical protein K07735 algH; putative transcriptional regulator
D AS200_03500 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D AS200_03495 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D AS200_44145 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D AS200_32530 DNA-binding protein K06204 dksA; RNA polymerase-binding transcription factor
D AS200_13035 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0