+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Seriola dumerili (greater amberjack)
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 111223288 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 111239258 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 111229614 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 111235503 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 111219044 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 111224550 fam103a1; RNMT-activating mini protein K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 111232417 ncbp1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 111240453 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 111222136 nudt21; cleavage and polyadenylation specificity factor subunit 5 isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 111224530 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 111238383 cpsf7; cleavage and polyadenylation specificity factor subunit 7 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 111232652 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 111239528 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 111233157 cpsf1; cleavage and polyadenylation specificity factor subunit 1 isoform X1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 111237564 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 111225735 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 111236101 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 111230344 cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 111231552 fip1l1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 111237313 wdr33; pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 111222846 WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 111222862 WD repeat-containing protein 82-like K14962 WDR82; COMPASS component SWD2
E 111225507 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 111217471 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 111219951 serine/threonine-protein phosphatase alpha-2 isoform-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 111235970 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 111226896 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 111232070 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 111222128 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 111221758 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 111232355 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 111219989 cstf3; cleavage stimulation factor subunit 3 isoform X1 K14408 CSTF3; cleavage stimulation factor subunit 3
E 111218742 sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 111219419 snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 111238952 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 111221775 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 111224863 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 111237006 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 111230562 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 111226540 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 111237564 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 111225735 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 111236101 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 111232355 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 111218742 sympk; symplekin K06100 SYMPK; symplekin
E 111239506 oocyte-specific histone RNA stem-loop-binding protein 2-like K18710 SLBP; histone RNA hairpin-binding protein
E 111230378 slbp; histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 111237201 casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 111222222 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 111238002 supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 111235619 mettl3; N6-adenosine-methyltransferase 70 kDa subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 111231459 mettl14; N6-adenosine-methyltransferase subunit METTL14 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 111237832 mettl4; methyltransferase-like protein 4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 111238017 mettl16; U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 111216393 wtap; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 111237196 virma; protein virilizer homolog K22910 VIRMA; protein virilizer
E 111219434 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 111219146 rbm15; putative RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 111238724 zc3h13; zinc finger CCCH domain-containing protein 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 111224951 cbll1; E3 ubiquitin-protein ligase Hakai isoform X1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 111220611 papolg; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 111230330 papolb; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 111229165 papd4; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 111220027 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 111218592 bard1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 111238671 rbm26; RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26
E 111222549 fto; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 111216725 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 111219119 tardbp; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
E 111222865 TAR DNA-binding protein 43-like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 111233429 dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 111224614 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 111218859 mettl8; methyltransferase-like protein 8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 111227965 mettl22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 111227725 fam46a; protein FAM46A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 111227767 protein FAM46A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 111216343 protein FAM46A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 111218528 fam46c; protein FAM46C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 111226771 protein FAM46C-like K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 111237831 zc3h14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 111239986 LOW QUALITY PROTEIN: serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
D 111234507 srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 111222605 rbm8a; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 111231967 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 111217935 THO complex subunit 4-like K12881 THOC4; THO complex subunit 4
E 111230306 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 111220864 spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 111237562 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 111221834 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 111226856 casc3; protein CASC3 K14323 CASC3; protein CASC3
E 111222751 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 111225562 pnn; pinin K13114 PNN; pinin
E 111223791 apoptotic chromatin condensation inducer in the nucleus-like K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 111235663 apoptotic chromatin condensation inducer in the nucleus-like K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 111219757 RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 111227176 RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 111225968 srrm1; serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 111231148 thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 111234368 thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 111232659 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 111217935 THO complex subunit 4-like K12881 THOC4; THO complex subunit 4
E 111230306 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 111229270 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 111226849 thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 111221447 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 111235525 pcid2; PCI domain-containing protein 2 isoform X1 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 111230582 transcription and mRNA export factor ENY2-2-like K11368 ENY2; enhancer of yellow 2 transcription factor
E 111227810 transcription and mRNA export factor ENY2-2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 111226567 caltractin-like K10840 CETN2; centrin-2
E 111224269 cetn3; centrin-3 isoform X1 K16466 CETN3; centrin-3
E 111218107 mcm3ap; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 111219076 tpr; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 111239121 nucleoprotein TPR-like K09291 TPR; nucleoprotein TPR
E 111221714 rae1; mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 111224368 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 111224941 nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 111227016 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 111240398 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 111229508 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 111239882 nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 111218428 nup62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 111216779 nup88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 111225186 nup93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 111221324 nup98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 111224729 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 111238278 nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 111236168 nup188; nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188
E 111223075 nup153; nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153
E 111237778 nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 111239788 nup160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 111237976 nup35; nucleoporin NUP53 isoform X1 K14313 NUP35; nuclear pore complex protein Nup53
E 111225184 nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 111217317 nup210; nuclear pore membrane glycoprotein 210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 111238503 nup214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 111234293 nuclear envelope pore membrane protein POM 121-like K14316 POM121; nuclear pore complex protein Nup121
E 111237233 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 111223236 nupl2; nucleoporin-like protein 2 K14321 NUPL2; nucleoporin-like protein 2
E 111230996 ndc1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1
E 111227833 seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 111218510 E3 SUMO-protein ligase RanBP2-like K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 111225429 sentrin-specific protease 2-like K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 111217356 aaas; aladin K14320 AAAS; aladin
E 111224269 cetn3; centrin-3 isoform X1 K16466 CETN3; centrin-3
E 111238545 gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 111232716 nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 111226569 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 111232462 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 111224706 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 111240112 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 111233361 acidic leucine-rich nuclear phosphoprotein 32 family member B-like K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 111225606 elavl1; ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 111236219 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 111217428 elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 111220451 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 111231603 elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 111226794 faf2; FAS-associated factor 2 isoform X1 K18726 FAF2; FAS-associated factor 2
E 111231660 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 111229268 transitional endoplasmic reticulum ATPase-like K13525 VCP; transitional endoplasmic reticulum ATPase
E 111225797 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 111229265 transportin-2 K18727 TNPO2; transportin-2
E 111227094 tnpo2; transportin-2 K18727 TNPO2; transportin-2
E 111220637 exportin-1 isoform X1 K14290 XPO1; exportin-1
E 111238276 xpo1; exportin-1 K14290 XPO1; exportin-1
E 111224288 xpo7; exportin-7 K18460 XPO7; exportin-7
E 111219898 ran GTPase-activating protein 1-like K14319 RANGAP1; Ran GTPase-activating protein 1
E 111230311 ran GTPase-activating protein 1-like isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 111236834 eukaryotic translation initiation factor 4E type 2-like K03259 EIF4E; translation initiation factor 4E
E 111232430 eukaryotic translation initiation factor 4E-1A-like K03259 EIF4E; translation initiation factor 4E
E 111225892 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 111235257 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E
E 111229155 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 111223568 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 111229166 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 111222475 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 111236600 eif4g2; eukaryotic translation initiation factor 4 gamma 2 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 111238974 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 111232789 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 111233549 eif4g3; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 111221982 eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 111216977 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 111230852 eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 isoform X1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 111239317 eukaryotic translation initiation factor 4E-binding protein 2-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 111235308 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 111226579 eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 111222821 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 111225771 angel1; protein angel homolog 1 K18729 ANGEL; protein angel
E 111219470 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 111226494 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 111226954 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 111226543 cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 111226350 cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 111221318 gemin5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 111225652 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 111217078 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111220632 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111223960 cpeb1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111226573 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111231829 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111236686 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 111237953 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 111238990 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 111231330 gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 111217376 embryonic polyadenylate-binding protein-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 111227657 pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 111223194 polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 111225835 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 111236539 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 111238879 paip2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 111231301 paip2b; polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 111223163 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 111235951 LOW QUALITY PROTEIN: deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 111232501 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 111217861 denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 111220350 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 111234910 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 111218439 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 111219300 heterogeneous nuclear ribonucleoprotein A1-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 111222168 msi2; RNA-binding protein Musashi homolog 2 K14411 MSI; RNA-binding protein Musashi
E 111221920 RNA-binding protein Musashi homolog 1-like K14411 MSI; RNA-binding protein Musashi
E 111219866 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 111227856 RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 111236772 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 111219948 pelo; protein pelota homolog K06965 PELO; protein pelota
E 111239286 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 111238407 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 111221545 ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 111235032 ATP-dependent RNA helicase DDX19A-like K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 111227226 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 111234990 sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 111232891 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 111221073 larp6; la-related protein 6 K18733 LARP6; la-related protein 6
E 111231199 la-related protein 6-like K18733 LARP6; la-related protein 6
E 111234492 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 111226589 transcriptional activator protein Pur-alpha-like K21772 PURA; transcriptional activator protein Pur-alpha
E 111239658 purb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 111228001 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 111238102 poldip3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 111221551 zinc finger CCCH domain-containing protein 11A-like isoform X1 K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 111230015 leng8; leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
E 111219622 patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 111239441 etf1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 111220217 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 111236263 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 111216888 regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 111228938 regulator of nonsense transcripts 1-like K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 111224837 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 111218389 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 111232505 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 111226526 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform-like isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 111236941 ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 111234362 ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 111228032 ppp2r1b; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 111228651 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 111231485 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 111226604 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 111235194 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 111238473 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 111232403 ppp2r2c; protein phosphatase 2, regulatory subunit B, gamma isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 111218174 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta-like isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 111225776 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 111225810 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 111225943 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 111225338 ppp2r5c; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 111225341 ppp2r5e; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 111224178 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 111237604 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 111237364 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 111231302 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 111227933 smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 111222624 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 111217201 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 111231761 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 111234417 smg8; protein SMG8 K18734 SMG8; protein SMG8
E 111234042 smg9; protein SMG9 isoform X1 K18735 SMG9; protein SMG9
E 111238990 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 111231330 gigyf1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 111237714 secisbp2; selenocysteine insertion sequence-binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 111238647 secisbp2l; selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 111216953 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 111227006 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 111235892 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 111221179 pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 111222316 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 111229538 unconventional myosin-Va-like K10357 MYO5; myosin V
E 111229550 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 111238702 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 111232075 unconventional myosin-Vb-like K10357 MYO5; myosin V
E 111225198 protein bicaudal D homolog 1-like isoform X1 K18739 BICD; protein bicaudal D
E 111224624 protein bicaudal D homolog 1-like K18739 BICD; protein bicaudal D
E 111217269 protein bicaudal D homolog 2-like isoform X1 K18739 BICD; protein bicaudal D
E 111222890 protein bicaudal D homolog 2-like K18739 BICD; protein bicaudal D
E 111234917 protein bicaudal D homolog 2-like K18739 BICD; protein bicaudal D
E 111225966 exd1; piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 111216734 actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 111230355 actb; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 111220863 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 111227655 mbp; LOW QUALITY PROTEIN: myelin basic protein K17269 MBP; myelin basic protein
E 111223958 desmin-like K07606 VIM; vimentin
E 111232733 peripherin-like K07606 VIM; vimentin
E 111230982 vim; vimentin K07606 VIM; vimentin
E 111225195 metallothionein K14739 MT1_2; metallothionein 1/2
E 111239852 transcriptional regulator Myc-like isoform X1 K04377 MYC; Myc proto-oncogene protein
E 111237873 myc; myc proto-oncogene protein isoform X1 K04377 MYC; Myc proto-oncogene protein
E 111238287 transcriptional regulator Myc-2-like K04377 MYC; Myc proto-oncogene protein
E 111220369 T-box transcription factor TBX6-like K10180 TBX6; T-box protein 6
E 111230900 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 111233074 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 111225376 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 111232533 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 111221039 nanos homolog 1-like K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 111229420 far upstream element-binding protein 2-like K13210 FUBP; far upstream element-binding protein
E 111227106 far upstream element-binding protein 2-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 111239371 far upstream element-binding protein 3-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 111239563 far upstream element-binding protein 3-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 111231183 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 111217983 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 111220816 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 111220817 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 111227466 elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
E 111237914 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 111232428 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 111223543 hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 111224113 agfg1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 111228828 arf-GAP domain and FG repeat-containing protein 1-like isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 111233028 arf-GAP domain and FG repeat-containing protein 1-like isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 111220939 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 111222926 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 111223296 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 111225294 polypyrimidine tract-binding protein 1-like isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 111236187 polypyrimidine tract-binding protein 1-like isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 111217078 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111220632 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111223960 cpeb1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111226573 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111231829 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 111219470 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 111226494 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 111226954 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 111226543 cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 111226350 cyfip1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 111217290 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 111223921 pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 111217301 poly(rC)-binding protein 4-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 111220573 poly(rC)-binding protein 3-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 111218793 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 111219334 poly(rC)-binding protein 4-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 111232990 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 111229581 caprin1; caprin-1 isoform X1 K18743 CAPRIN1; caprin-1
E 111238333 caprin-1-like K18743 CAPRIN1; caprin-1
E 111224853 caprin-2-like K18744 CAPRIN2; caprin-2
E 111219242 ybx1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 111223795 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 111230534 protein argonaute-3-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 111223032 protein argonaute-4-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 111235733 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 111235734 protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 111223362 protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 111236834 eukaryotic translation initiation factor 4E type 2-like K03259 EIF4E; translation initiation factor 4E
E 111232430 eukaryotic translation initiation factor 4E-1A-like K03259 EIF4E; translation initiation factor 4E
E 111225892 eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 111235257 eukaryotic translation initiation factor 4E-like K03259 EIF4E; translation initiation factor 4E
E 111229155 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 111216888 regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 111228938 regulator of nonsense transcripts 1-like K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 111236686 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 111237953 ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 111230535 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 111233652 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 111236049 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 111221007 mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 111222630 mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 111230904 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 111229090 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 111237341 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 111217274 protein LSM14 homolog B-like K18749 LSM14; protein LSM14
E 111221922 protein LSM14 homolog B-like K18749 LSM14; protein LSM14
E 111221399 lsm14a; protein LSM14 homolog A isoform X1 K18749 LSM14; protein LSM14
E 111233743 protein LSM14 homolog A-like isoform X1 K18749 LSM14; protein LSM14
E 111217290 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 111223921 pcbp2; poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 111219242 ybx1; nuclease-sensitive element-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 111221062 wtip; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 111235629 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 111227864 limd1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 111219498 putative helicase mov-10-B.2 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 111219221 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 111218925 putative helicase mov-10-B.2 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 111235716 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 111220804 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 111227933 smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 111222624 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 111217201 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 111231761 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 111224108 mRNA decay activator protein ZFP36L1-like isoform X1 K15308 TTP; tristetraprolin
E 111216437 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 111216969 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 111220694 zfp36l2; mRNA decay activator protein ZFP36L2 isoform X1 K18753 ZFP36L; butyrate response factor
E 111224082 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 111226181 mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 111235800 lin28a; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 111236850 protein lin-28 homolog B-like K18754 LIN28; protein lin-28
E 111230527 protein lin-28 homolog A-like K18754 LIN28; protein lin-28
E 111217939 htt; huntingtin K04533 HD; huntingtin
E 111224901 ipo8; importin-8 K18755 IPO8; importin-8
E 111226434 protein bicaudal C homolog 1-like K18756 BICC1; protein bicaudal C
E 111235320 bicc1; protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 111218439 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 111219300 heterogeneous nuclear ribonucleoprotein A1-like isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 111220870 prkacb; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 111229212 prkaca; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 111227008 cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 111225674 la-related protein 1B-like isoform X1 K18757 LARP1; la-related protein 1
E 111234427 larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 111219938 ataxin-2-like protein K23625 ATXN2_2L; ataxin 2/2L
E 111230769 atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 111238915 atxn2l; ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 111221071 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 111220520 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 111224659 mRNA-decapping enzyme 1B-like K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 111230050 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 111232003 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 111231566 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 111216781 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 111237896 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 111216672 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 111240332 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 111224833 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 111225373 klc1; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 111216946 kinesin light chain 1-like K10407 KLC; kinesin light chain
E 111220553 kinesin light chain 1-like isoform X1 K10407 KLC; kinesin light chain
E 111235625 klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 111222316 myo5a; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 111229538 unconventional myosin-Va-like K10357 MYO5; myosin V
E 111229550 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 111238702 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 111232075 unconventional myosin-Vb-like K10357 MYO5; myosin V
E 111218848 tubulin alpha chain K07374 TUBA; tubulin alpha
E 111218849 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 111218500 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 111221326 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 111234751 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 111234760 tubulin alpha-1A chain-like K07374 TUBA; tubulin alpha
E 111234759 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 111233470 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 111234898 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 111230197 tubulin alpha-1C chain-like isoform X1 K07374 TUBA; tubulin alpha
E 111230200 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 111234930 tubulin alpha-8 chain-like isoform X1 K07374 TUBA; tubulin alpha
E 111234965 tubulin alpha chain K07374 TUBA; tubulin alpha
E 111234966 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 111217078 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111220632 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111223960 cpeb1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111226573 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111231829 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 111221318 gemin5; gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 111225652 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 111219986 trinucleotide repeat-containing gene 6B protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 111238050 trinucleotide repeat-containing gene 6B protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 111236287 trinucleotide repeat-containing gene 6C protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 111230253 tnrc6a; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 111227265 trinucleotide repeat-containing gene 6C protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 111225241 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 111224844 CCR4-NOT transcription complex subunit 2-like K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 111228443 CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 111229971 cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 111233237 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 111224834 CCR4-NOT transcription complex subunit 4-like isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 111229903 CCR4-NOT transcription complex subunit 4-like K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 111226432 CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 111228016 CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 111221316 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 111226595 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 111222533 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 111228951 dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 111235083 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 111221029 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 111225042 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 111222286 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 111217208 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 111220436 protein Tob1-like K14443 TOB; protein Tob/BTG
E 111234040 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 111239190 protein Tob2-like K14443 TOB; protein Tob/BTG
E 111227233 protein Tob1-like K14443 TOB; protein Tob/BTG
E 111222821 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 111217936 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 111217536 enhancer of mRNA-decapping protein 3-like isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 111229548 enhancer of mRNA-decapping protein 3-like K12615 EDC3; enhancer of mRNA-decapping protein 3
E 111225211 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 111229392 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 111224837 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 111218389 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 111232505 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 111232424 E3 ubiquitin-protein ligase TRIM21-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 111223504 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 111232698 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 111220787 uncharacterized protein LOC111220787 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 111220788 LOW QUALITY PROTEIN: uncharacterized protein LOC111220788 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 111217224 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 111226394 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 111217350 ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 111221034 ythdf3; YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein
E 111225727 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 111235106 YTH domain-containing family protein 1-like K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 111217826 nucleolysin TIA-1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 111220597 tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 111227761 nucleolysin TIA-1-like K13201 TIA1; nucleolysin TIA-1/TIAR
E 111217376 embryonic polyadenylate-binding protein-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 111227657 pabpc1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 111223194 polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 111225835 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 111220939 stau2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 111222926 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 111219470 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 111226494 fmr1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 111226954 fragile X mental retardation syndrome-related protein 1-like isoform X1 K15516 FMR; fragile X mental retardation protein
E 111225606 elavl1; ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 111236219 ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 111232702 g3bp1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 111240104 g3bp2; ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 111216837 eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 111216580 eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 111223568 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 111229166 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 111237562 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 111221982 eif4b; eukaryotic translation initiation factor 4B isoform X1 K03258 EIF4B; translation initiation factor 4B
E 111222475 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 111236600 eif4g2; eukaryotic translation initiation factor 4 gamma 2 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 111238974 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 111232789 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 111233549 eif4g3; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 111225371 ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 111218098 ribosomal protein S6 kinase alpha-2-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 111226530 rps6ka6; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 111238290 ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 111226444 rack1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 111217845 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 111240026 TNF receptor-associated factor 2-like isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 111229789 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 111232716 nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 111235420 hdac6; histone deacetylase 6 isoform X1 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 111238386 tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 111221464 la-related protein 4-like isoform X1 K18763 LARP4; la-related protein 4
E 111219284 la-related protein 4-like isoform X1 K18763 LARP4; la-related protein 4
E 111233926 larp4b; la-related protein 4B K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 111220520 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 111224659 mRNA-decapping enzyme 1B-like K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 111221071 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 111230535 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 111233652 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 111236049 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 111217536 enhancer of mRNA-decapping protein 3-like isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 111229548 enhancer of mRNA-decapping protein 3-like K12615 EDC3; enhancer of mRNA-decapping protein 3
E 111225211 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 111217936 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 111230050 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 111232003 lsm2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 111231566 lsm3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 111216781 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 111237896 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 111216672 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 111240332 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 111224833 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 111223795 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 111216427 xrn2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 111230747 U8 snoRNA-decapping enzyme-like K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 111226662 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 111229207 helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 111229306 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 111237782 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 111233509 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 111231166 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 111216978 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 111225229 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 111222992 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 111217177 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 111217960 exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 111235324 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 111224576 dis3l; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 111219102 exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 111227449 c1d; nuclear nucleic acid-binding protein C1D isoform X1 K12592 C1D; exosome complex protein LRP1
E 111233748 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 111219923 papd5; non-canonical poly(A) RNA polymerase PAPD5 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 111227697 non-canonical poly(A) RNA polymerase PAPD7-like isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 111233191 papd7; non-canonical poly(A) RNA polymerase PAPD7 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 111232682 zinc finger CCHC domain-containing protein 7-like K12597 AIR1_2; protein AIR1/2
E 111231421 zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 111239869 skiv2l2; superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 111223163 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 111226398 ttc37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 111229543 wdr61; WD repeat-containing protein 61 isoform X1 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 111226432 CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 111228016 CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 111225241 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 111224844 CCR4-NOT transcription complex subunit 2-like K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 111228443 CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 111229971 cnot3; CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 111233237 CCR4-NOT transcription complex subunit 3-like K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 111224834 CCR4-NOT transcription complex subunit 4-like isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 111229903 CCR4-NOT transcription complex subunit 4-like K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 111221316 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 111226595 CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 111218361 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 111233199 CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 111227710 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 111235083 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 111221029 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 111216593 parn; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 111239765 dhx36; ATP-dependent RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 111225042 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 111222286 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 111217208 maternal B9.10 protein-like K14443 TOB; protein Tob/BTG
E 111220436 protein Tob1-like K14443 TOB; protein Tob/BTG
E 111234040 maternal B9.15 protein-like K14443 TOB; protein Tob/BTG
E 111239190 protein Tob2-like K14443 TOB; protein Tob/BTG
E 111227233 protein Tob1-like K14443 TOB; protein Tob/BTG
E 111229271 nocturnin-like isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 111230402 noct; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 111224789 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 111216529 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 111226662 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 111219413 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 111229541 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 111229207 helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 111221528 helz2; helicase with zinc finger domain 2 isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 111225688 nrde2; protein NRDE2 homolog K26109 NRDE2; nuclear exosome regulator NRDE2
E 111223749 samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 111232307 samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 111223572 focad; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 111222176 zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 111216378 zc3h12d; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 111218760 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 111230596 ribonuclease ZC3H12A-like K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 111235829 ribonuclease ZC3H12A-like K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 111238737 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 111237904 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 111234416 rexo2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 111218971 eno1; alpha-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 111222874 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 111233211 gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 111230074 eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 111239447 beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 111227418 pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 111218240 pfkl; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 111221634 ATP-dependent 6-phosphofructokinase, muscle type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 111219285 ATP-dependent 6-phosphofructokinase, muscle type-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 111233862 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 111228196 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 111236383 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 111218421 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 111237782 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 111229306 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 111231166 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 111222992 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024