+F Chromosome and associated proteins KO
#
Chromosome and Associated Proteins - Shigella dysenteriae Sd197
%
!
AEukaryotic type
B Sister chromatid cohesion proteins
C Cohesin complex
C Adherin complex
C CTF18-RFC complex
C Fork protection complex
C Other sister chromatid cohesion factors
B Meiosis-specific proteins
C Cohesin complex and associated proteins
C Synaptonemal complex
C DSB formation-related proteins
C Others
B Nucleosome assembly factors
C Histones
C Histone chaperones
D Nucleoplasmins
D NAPs (Nucleosome assembly proteins)
D CAF-1
D FACT complex
D Other Histone chaperones and regulators
C HMG (high mobility group) proteins
B Histone modification proteins
C HATs (histone acetyltransferases)
C HAT complexes
D PCAF complex
D STAGA complex
D TFTC complex
D TIP60 complex
D HBO1 complex
D MOZ/MORF complex
D SAGA complex
D SLIK complex
D ADA-HAT complex
D HAT-A2 complex
D ATAC complex
D HATB complex
D NSL complex
D MSL complex
D NuA3 complex
D NuA4 complex
D SAS complex
C HDACs (histone deacetylases)
D Class I HDACs
D Class II HDACs
D SIRTs (sirtuins, class III HDACs)
D Class IV HDACs
C HDAC complexes
D Sin3A-HDAC complex
D BRAF-HDAC complex
D REST complex
D SHIP complex
D MiDAC complex
D SMART complex
D Other HDAC associated proteins
C HMTs (histone methyltransferases)
D HKMTs (histone lysine methyltransferases)
D PRMTs (protein arginine metyltransferases)
C HMT complexes
D COMPASS/SET1 complex
D COMPASS/SET1 complex (yeast)
D MLL-HCF complex
D MLL3/MLL4 complex
D Dot1-containing complex
C Histone demethylases
C Polycomb repressive complex (PRC) and associated proteins
D Canonical PRC1 (PRC1.2/1.4)
E PRC1.4 specific proteins
D Noncanonical PRC1 (PRC1.1)
D Noncanonical PRC1 (PRC1.3/1.5)
D Noncanonical PRC1 (PRC1.6)
D PRC2.1
D PRC2.2
D PR-DUB complex
D Other PRC associated proteins
C Sir proteins
C Other histone modification proteins
B Chromosome condensation proteins
C Condensin I
C Condensin II
C Other regulators of chromosome condensation
B Centromeric chromatin formation proteins
C Kinetochore proteins
D Centromere proteins
D CPC (chromosomal passenger complex)
D KMN network proteins
E MIS12 complex
E NDC80 complex
D Mis6 complex
D COMA complex
D NMS complex
E NDC80 complex
E MIND kinetochore complex
D MIS16-MIS18 complex
D DASH complex
D CBF3 complex
D Others
C SAC (spindle assembly checkpoint) factors
D Core SAC proteins
D Motor proteins
E RZZ complex
E Dynein complex
D Protein kinases
D Others
C Other centromeric chromatin formation proteins
D Shugoshin
D PP2A (protein phosphatase 2A)
B Heterochromatin formation proteins
C HP1 (heterochromatin protein 1)
C MBPs (metylated DNA binding proteins)
C Other heterochromatin formation proteins
D SDY_1045 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Gene silencing
C RISC (RNA-induced silencing complex)
C piRNA pathway
C RNA interference (RNAi) pathway
D RITS (RNA-induced transcriptional silencing) complex
D RDRC (RNA-directed RNA polymerase complex)
D Other RNAi proteins
C microRNA pathway
D Microprocessor complex
E SDY_2808 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RISC loading complex
D Other miRNA pathway proteins
C Transposable elements
B Centrosome formation proteins
C Centriole proteins
C Pericentriolar materials (PCM)
D Centriolar satellite
D Other PCM proteins
C Cyclins
C Kinases and associated factors
D Kinase anchoring protein
C Microtubules and associated factors
D gamma-tubulin ring complex
D Other tubulins
D Dynactin complex
D BRISC complex
D Microtubule-associated proteins
C Augmin complex
C Centrosome duplication proteins
D Centriole replication proteins
D Regulators of centriole replication
D Other centrosome duplication proteins
C Nde1-Su48 complex
C LINC complex
C 3M complex
C Gypsy chromatin insulator complex
C Other centrosome associated proteins
C Spindle formation proteins
B Sister chromatid separation proteins
C Securin and associated proteins
C Separase
C APC/C complex
C Aurora kinases
D Regulators of Aurora kinases
C TACC proteins
C Polo kinases
C Early mitotic inhibitors
B Chromatin remodeling factors
C BAF complex
C PBAF complex
C GBAF(ncBAF) complex
C CHRAC complex
C RSF complex
C WICH complex
C B-WICH complex
C NORC complex
C BRF complex
C NuRD complex
C NuRF complex
C NuRF complex (fruit fly)
C CERF complex
C SRCAP complex
C INO80 complex
C INO80 complex (yeast)
C RSC complex
C SWI/SNF complex
C SWR1 complex
C ASTRA complex
C Other chromatin remodeling factors
#
AProkaryotic type
B Nucleoid associated proteins
C HNS (histone-like nucleoid structuring protein)
D SDY_1289 hns; DNA-binding protein HLP-II K03746 hns; DNA-binding protein H-NS
D SDY_2859 stpA; DNA-binding protein K11685 stpA; DNA-binding protein StpA
C HU (heat unstable protein)
D SDY_3726 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
D SDY_0292 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
C IHF (integration host factor)
D SDY_1807 himA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D SDY_2346 himD; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
C Other nucleoid associated proteins
D SDY_0974 cbpA; curved DNA-binding protein K05516 cbpA; curved DNA-binding protein
D SDY_0973 yccD; conserved hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM
D SDY_4657 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D SDY_4184 dnaA; DnaA K02313 dnaA; chromosomal replication initiator protein
D SDY_3328 yraO; conserved hypothetical protein K12961 diaA; DnaA initiator-associating protein
D SDY_0941 yccV; conserved hypothetical protein K11940 hspQ; heat shock protein HspQ
D SDY_0783 dps; global regulator K04047 dps; starvation-inducible DNA-binding protein
D SDY_3438 fis; site-specific DNA inversion stimulation factor K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SDY_4417 hfq; host factor I for bacteriophage Q beta replication K03666 hfq; host factor-I protein
D SDY_3165 iciA; replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D SDY_2372 lrp; regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SDY_0893 yejK; conserved hypothetical protein K06899 ndpA; nucleoid-associated protein
B Chromosome partitioning proteins
C MukBEF complex
D SDY_2334 mukB; kinesin-like cell division protein involved in chromosome partitioning K03632 mukB; chromosome partition protein MukB
D SDY_2335 mukE; conserved hypothetical protein K03804 mukE; chromosome partition protein MukE
D SDY_2336 mukF; MukF K03633 mukF; chromosome partition protein MukF
C Condensin-like complex
C Divisome proteins
D SDY_0124 ftsA; ATP-binding cell division protein K03590 ftsA; cell division protein FtsA
D SDY_2947 conserved hypothetical protein K05589 ftsB; cell division protein FtsB
D SDY_3614 ftsE; ATP-binding component of a membrane-associated complex involved in cell division K09812 ftsE; cell division transport system ATP-binding protein
D SDY_0114 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D SDY_2371 ftsK; cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D SDY_0113 ftsL; cell division protein K03586 ftsL; cell division protein FtsL
D SDY_3804 ftsN; essential cell division protein K03591 ftsN; cell division protein FtsN
D SDY_0123 ftsQ; cell division protein K03589 ftsQ; cell division protein FtsQ
D SDY_0119 ftsW; FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D SDY_3613 ftsX; cell division membrane protein K09811 ftsX; cell division transport system permease protein
D SDY_0125 ftsZ; tubulin-like GTP-binding protein and GTPase K03531 ftsZ; cell division protein FtsZ
D SDY_2609 zipA; cell division protein involved in FtsZ ring K03528 zipA; cell division protein ZipA
D SDY_3171 ygfE; conserved hypothetical protein K09888 zapA; cell division protein ZapA
D SDY_3816 yiiU; conserved hypothetical protein K09892 zapB; cell division protein ZapB
D SDY_0919 ycbW; conserved hypothetical protein K18657 zapC; cell division protein ZapC
D SDY_0132 yacF; conserved hypothetical protein K18778 zapD; cell division protein ZapD
D SDY_3408 yhcM; conserved hypothetical protein K06916 zapE; cell division protein ZapE
D SDY_4376 ytfB; conserved hypothetical protein K07269 ytfB; cell division protein YtfB
D SDY_2633 amiA; N-acetylmuramoyl-l-alanine amidase I K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D SDY_3034 putative amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D SDY_4420 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D SDY_0456 acrA; acridine efflux pump K03585 acrA; membrane fusion protein, multidrug efflux system
C Inhibitors of FtsZ assembly
D SDY_1207 minC; MinC K03610 minC; septum site-determining protein MinC
D SDY_1206 minD; MinD K03609 minD; septum site-determining protein MinD
D SDY_1205 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor
D SDY_4071 ttk; putative transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
C Other chromosome partitioning proteins
D SDY_0627 seqA; negative modulator of initiation of replication K03645 seqA; negative modulator of initiation of replication
D SDY_3426 mreB; penicillin binding protein 3 K03569 mreB; rod shape-determining protein MreB and related proteins
D SDY_3425 mreC; rod shape-determining protein K03570 mreC; rod shape-determining protein MreC
D SDY_3424 mreD; rod shape-determining protein K03571 mreD; rod shape-determining protein MreD
D SDY_0556 mrdB; rod shape-determining membrane protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D SDY_P031 parA; plasmid segregation protein K03496 parA; chromosome partitioning protein
D SDY_P032 parB; plasmid segregation protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SDY_P161 virB; VirB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SDY_3218 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SDY_3210 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SDY_4007 gidA; glucose-inhibited division K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SDY_4008 gidB; GldB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SDY_3934 xerC; site-specific recombinase K03733 xerC; integrase/recombinase XerC
D SDY_3188 xerD; site-specific recombinase K04763 xerD; integrase/recombinase XerD
D SDY_2182 mrp; putative ATPase K03593 mrp; ATP-binding protein involved in chromosome partitioning
D SDY_3523 fic; Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D SDY_3878 yihA; conserved hypothetical protein K03978 engB; GTP-binding protein
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2025