+E Transcription factors KO #

  Transcription Factors - Shigella dysenteriae 1617 (serotype 1)

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D Asd1617_01332 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Asd1617_05042 L-rhamnose operon transcriptional activator rhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D Asd1617_05043 L-rhamnose operon regulatory protein rhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D Asd1617_05354 Regulatory protein adiY K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D Asd1617_03543 Ethanolamine operon regulatory protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D Asd1617_05927 Regulatory protein soxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D Asd1617_02136 Multiple antibiotic resistance protein marA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator D Asd1617_06136 Right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D Asd1617_04666 AppY protein K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator D Asd1617_04661 Transcriptional regulator GadX K21905 gadX; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator D Asd1617_05349 Melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D Asd1617_02264 Transcriptional regulator, AraC family protein K25495 nimR; AraC family transcriptional regulator, regulator of nimT D Asd1617_01088 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D Asd1617_04060 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Asd1617_05207 Transcriptional activator protein ilvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D Asd1617_05138 Transcriptional activator protein metR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Asd1617_00021 Transcriptional activator protein nhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D Asd1617_04989 Hydrogen peroxide-inducible protein activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Asd1617_04224 Transcription regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Asd1617_04416 Tdc operon transcriptional activator K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator D Asd1617_00519 Transcriptional regulator, LysR family protein K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon D Asd1617_01762 Cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D Asd1617_03039 Transcriptional regulator cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D Asd1617_02281 Transcriptional regulator, LysR family protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D Asd1617_03038 Nitrogen assimilation regulatory protein nac K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D Asd1617_04537 Transcriptional regulator, LysR family protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D Asd1617_04327 Transcriptional regulator, LysR family protein K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon D Asd1617_05220 Transcriptional regulator, LysR family protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D Asd1617_01852 Transcriptional regulator, LysR family protein K24082 pgrR; LysR family transcriptional regulator, regulator of peptidoglycan recycling C DeoR family D Asd1617_01055 Deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D Asd1617_04828 Glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D Asd1617_03055 Galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor D Asd1617_04057 L-fucose operon activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D Asd1617_03901 Glucitol operon repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor D Asd1617_05721 Transcriptional regulator, DeoR family protein K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor C LacI family D Asd1617_00495 Lactose operon repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D Asd1617_02872 Mgl repressor and galactose ultrainduction factor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Asd1617_04088 Galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Asd1617_05224 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Asd1617_04901 Xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Asd1617_04999 Transcriptional repressor cytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D Asd1617_00131 Catabolite repressor-activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D Asd1617_05592 Trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D Asd1617_03909 Cryptic asc operon repressor K03487 ascG; LacI family transcriptional regulator, asc operon repressor D Asd1617_02534 Purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D Asd1617_04742 Gluconate utilization system GNT-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D Asd1617_04347 Ebg operon repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor D Asd1617_02475 Maltose regulon regulatory protein malI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein C GntR family D Asd1617_05451 Transcriptional regulator, GntR family protein K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator D Asd1617_05373 Transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D Asd1617_01602 Fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D Asd1617_00166 Pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Asd1617_04380 Exu regulon transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D Asd1617_05287 L-lactate dehydrogenase operon regulatory protein K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator D Asd1617_04513 Transcriptional regulator, GntR family protein K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor D Asd1617_03850 Transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Asd1617_02641 Transcriptional regulator, GntR family protein K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator D Asd1617_03834 Transcriptional regulator, GntR family protein K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D Asd1617_02125 Transcriptional regulator, GntR family protein K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor C TetR/AcrR family D Asd1617_00590 AcrAB operon repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D Asd1617_05323 Ttk protein K05501 slmA; TetR/AcrR family transcriptional regulator D Asd1617_01251 Transcriptional regulator, TetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator D Asd1617_02513 Transcriptional regulator, TetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Asd1617_02470 Uid operon repressor K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D Asd1617_05599 Transcriptional regulator, TetR family protein K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D Asd1617_02741 Transcriptional regulator, TetR family protein K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D Asd1617_04955 Transcriptional regulator, TetR family protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D Asd1617_01015 Transcriptional regulator, TetR family protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D Asd1617_00938 Transcriptional regulator, TetR family protein K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D Asd1617_05242 Transcriptional regulator, AsnC family protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D Asd1617_03202 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Asd1617_00500 Transcriptional regulator, AsnC family protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D Asd1617_01420 Transcriptional regulator, LuxR family protein K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Asd1617_01266 Regulatory protein CsgD K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D Asd1617_04694 Hypothetical protein K21901 dctR; LuxR family transcriptional regulator, dicarboxylate transport regulator D Asd1617_06093 Transcriptional activator protein bglJ K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides D Asd1617_04835 MalT regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D Asd1617_04669 Hypothetical protein K21907 gadE; LuxR family transcriptional regulator, glutamate-dependent acid resistance regulator C MarR family D Asd1617_02137 Transcriptional regulator, MarR family protein K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D Asd1617_02505 Transcriptional regulator, MarR family protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D Asd1617_03872 Transcriptional repressor mprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D Asd1617_03945 Transcriptional regulator, MarR family protein K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility C MerR family D Asd1617_00543 Copper-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Asd1617_04587 Zn(II)-responsive regulator of zntA K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D Asd1617_05926 Redox-sensitive transcriptional activator soxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D Asd1617_02928 Transcriptional regulator, MerR family protein K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes C Fur family D Asd1617_00785 Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Asd1617_05956 Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D Asd1617_05670 Acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D Asd1617_00517 Negative regulator of allantoin and glyoxylate utilization operons K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons D Asd1617_02660 Pectin degradation repressor protein KDGR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D Asd1617_04642 Catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Asd1617_01865 Transcription regulator FNR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Asd1617_02823 Catabolite gene activator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D Asd1617_03673 Transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Asd1617_05789 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D Asd1617_04702 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D Asd1617_02325 Transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D Asd1617_00975 Transcriptional regulator mntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Asd1617_03527 Transcriptional regulator, RpiR family protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D Asd1617_01472 Transcriptional regulator, RpiR family protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D Asd1617_04948 Biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Asd1617_04558 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Asd1617_06133 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D Asd1617_04479 Sugar fermentation stimulation protein B K07724 ner; Ner family transcriptional regulator D Asd1617_00960 DNA-binding protein Ner K07724 ner; Ner family transcriptional regulator D Asd1617_00118 Oligopeptide-binding protein oppA K11925 sgrR; SgrR family transcriptional regulator D Asd1617_06130 Nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D Asd1617_02619 Transcriptional regulator K14056 puuR; HTH-type transcriptional regulator, repressor for puuD D Asd1617_04360 Transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D Asd1617_03608 Hydrogenase-4 transcriptional activator K12146 hyfR; hydrogenase-4 transcriptional activator D Asd1617_03903 Nitric oxide reductase regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D Asd1617_03930 Formate hydrogenlyase transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator D Asd1617_00219 Carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator D Asd1617_00888 Molybdenum transport operon repressor K02019 modE; molybdate transport system regulatory protein D Asd1617_03936 Transporter K02019 modE; molybdate transport system regulatory protein D Asd1617_05703 Putative transcriptional regulatory protein K07726 K07726; putative transcriptional regulator D Asd1617_05408 DNA-binding protein K07726 K07726; putative transcriptional regulator D Asd1617_05409 Putative DNA-binding protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family D Asd1617_04805 Nickel-responsive regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D Asd1617_04965 Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D Asd1617_01254 Proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Asd1617_05587 RelB protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB D Asd1617_06247 RelB protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D Asd1617_03078 Putative cytosolic protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D Asd1617_00369 BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Asd1617_06186 DNA-binding protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Asd1617_06358 Virulence protein VirB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Asd1617_05126 Transcriptional activator rfaH K05785 rfaH; transcriptional antiterminator RfaH D Asd1617_04531 Arginine repressor, argR K03402 argR; transcriptional regulator of arginine metabolism D Asd1617_00767 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor D Asd1617_02086 Mlc protein K15545 mlc; transcriptional regulator of PTS gene D Asd1617_01838 Transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D Asd1617_03593 Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D Asd1617_02614 Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D Asd1617_02610 Phage shock protein C K03973 pspC; phage shock protein C D Asd1617_04170 Transcriptional regulator, algH K07735 algH; putative transcriptional regulator D Asd1617_00061 Transcriptional activatory protein caiF K08277 caiF; transcriptional activator CaiF D Asd1617_00193 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D Asd1617_00400 Transcriptional repressor nrdR K07738 nrdR; transcriptional repressor NrdR D Asd1617_00616 Curlin protein transcriptional activatory protein K11926 crl; sigma factor-binding protein Crl D Asd1617_00132 Cell division protein mraZ K03925 mraZ; transcriptional regulator MraZ D Asd1617_04293 Transcriptional regulator, AraC family protein K07471 ygiV; probable transcriptional regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0