+F Repair protein KO
#
DNA Repair and Recombination Proteins - Shigella dysenteriae 1617 (serotype 1)
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Asd1617_01866 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Asd1617_00812 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Asd1617_03799 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Asd1617_04156 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Asd1617_02496 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Asd1617_00151 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Asd1617_05322 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Asd1617_01866 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Asd1617_01088 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Asd1617_00812 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Asd1617_01089 Alkylated DNA repair protein alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E Asd1617_03799 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Asd1617_04340 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E Asd1617_02971 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E Asd1617_04156 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Asd1617_05709 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Asd1617_05317 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Asd1617_00819 Endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E Asd1617_02496 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Asd1617_02037 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Asd1617_02837 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E Asd1617_04919 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E Asd1617_04263 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Asd1617_03511 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Asd1617_05333 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E Asd1617_05103 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Asd1617_05934 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E Asd1617_01039 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E Asd1617_01426 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E Asd1617_02056 UV-repair endonuclease Cho K05984 cho; excinuclease Cho [EC:3.1.25.-]
E Asd1617_05156 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Asd1617_05103 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E Asd1617_03511 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Asd1617_05333 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F Asd1617_04938 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F Asd1617_04937 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Asd1617_04590 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F Asd1617_05337 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F Asd1617_02738 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Asd1617_03938 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E Asd1617_05798 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E Asd1617_04081 DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E Asd1617_03014 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E Asd1617_03645 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E Asd1617_00383 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E Asd1617_01461 Exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E Asd1617_00241 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Asd1617_05471 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E Asd1617_00729 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E Asd1617_02755 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E Asd1617_00274 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E Asd1617_00583 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E Asd1617_06099 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
E Asd1617_01459 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DNA ligase
E Asd1617_03511 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Asd1617_05333 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Asd1617_05156 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Asd1617_05933 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
E Asd1617_04876 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E Asd1617_01333 Very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Asd1617_04069 Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E Asd1617_04071 Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E Asd1617_04068 Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E Asd1617_03886 RecA protein K03553 recA; recombination protein RecA
E Asd1617_01481 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E Asd1617_01482 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E Asd1617_01480 Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Asd1617_01484 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E Asd1617_01899 Crossover junction endodeoxyribonuclease rusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E Asd1617_04998 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E Asd1617_05733 Primosomal replication protein N K02686 priB; primosomal replication protein N
E Asd1617_00587 Primosomal replication protein N' K04067 priC; primosomal replication protein N''
E Asd1617_06080 Primosomal protein I K02317 dnaT; DNA replication protein DnaT
E Asd1617_03014 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E Asd1617_00427 Exonuclease sbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E Asd1617_00423 Exonuclease sbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E Asd1617_03886 RecA protein K03553 recA; recombination protein RecA
E Asd1617_06129 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E Asd1617_05470 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E Asd1617_05341 ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Asd1617_04263 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Asd1617_03780 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E Asd1617_00581 Recombination protein recR K06187 recR; recombination protein RecR
E Asd1617_03755 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
E Asd1617_00435 Recombination associated protein rdgC K03554 rdgC; recombination associated protein RdgC
E Asd1617_01481 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E Asd1617_01482 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E Asd1617_01480 Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Asd1617_01484 Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E Asd1617_03962 Hypothetical protein K15342 cas1; CRISP-associated protein Cas1
E Asd1617_01129 DNA/RNA helicase (DEAD/DEAH box family) K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E Asd1617_00427 Exonuclease sbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E Asd1617_00423 Exonuclease sbcD K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Asd1617_03270 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Asd1617_05469 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Asd1617_01761 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Asd1617_04917 DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Asd1617_04263 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Asd1617_03780 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F Asd1617_00581 Recombination protein recR K06187 recR; recombination protein RecR
F Asd1617_03511 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
F Asd1617_05333 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F Asd1617_04558 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F Asd1617_02428 Integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
F Asd1617_03159 Integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F Asd1617_03014 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F Asd1617_04739 ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Asd1617_05144 ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Asd1617_05934 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F Asd1617_01039 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F Asd1617_01691 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Asd1617_00623 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Asd1617_01599 DNA polymerase V subunit K03502 umuC; DNA polymerase V
D Asd1617_01598 DNA polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D Asd1617_03886 RecA protein K03553 recA; recombination protein RecA
D Asd1617_05960 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D Asd1617_03755 DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Asd1617_05933 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D Asd1617_05331 DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D
D Asd1617_02810 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D Asd1617_03885 Regulatory protein recX K03565 recX; regulatory protein
D Asd1617_04843 Putative cytosolic protein K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-]
D Asd1617_00049 Putative YhgA-like transposase K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-]
D Asd1617_06060 Putative cytosolic protein K24089 rpnD; recombination-promoting nuclease RpnD [EC:3.1.21.-]
D Asd1617_03288 Putative YhgA-like transposase K24090 rpnE; recombination-promoting nuclease RpnE
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D Asd1617_05201 ATP-dependent DNA helicase rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D Asd1617_01180 Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D Asd1617_01005 ATP-dependent helicase, DinG family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Asd1617_02525 ATP-dependent helicase (EC 3.6.1-) K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D Asd1617_00151 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Asd1617_05322 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Asd1617_03275 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Asd1617_03855 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Asd1617_03276 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Asd1617_03856 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024