+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Salmonella enterica subsp. enterica serovar Choleraesuis

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D SCH_2576 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D SCH_4229 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C SCH_2575 era; GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division K03595 era; GTPase C SCH_3239 yhbZ; putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C SCH_0186 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor C SCH_3228 nusA; transcription pausing; L factor K02600 nusA; transcription termination/antitermination protein NusA C SCH_0459 nusB; transcription termination; L factor K03625 nusB; transcription antitermination protein NusB C SCH_4032 nusG; component in transcription antitermination K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D SCH_2239 rsuA; 16S rRNA pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D SCH_0085 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistance K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D SCH_3344 sun; putative rRNA methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SCH_4405 rsmC; 16S rRNA m2G 1207 methylse K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D SCH_3501 yhhF; putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D SCH_3034 yggJ; putative cytoplasmic protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D SCH_1846 yebU; paral putative rRNA methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D SCH_3786 gidB; associate with glucose-inhibited division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D SCH_0117 yabC; putative S-adenosyl methionine adenyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D SCH_3204 yraL; putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D SCH_3522 yhiQ; putative SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] C 23S rRNA modification factors D SCH_1829 rrmA; 23S rRNA m1G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D SCH_4245 yjfH; putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D SCH_3235 ftsJ; Ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D SCH_3167 ygjO; paral putative methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D SCH_0671 ybeA; putative cytoplasmic protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D SCH_1032 yccW; putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D SCH_3525 yhiR; putative cytoplasmic protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D SCH_1014 ycbY; putative N6-adenine-specific DNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D SCH_2920 ygdE; putative SAM-dependent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D SCH_2522 yfgB; putative Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SCH_2897 ygcA; putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D SCH_0875 ybjF; putative tRNA (uracil-5-)-methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D SCH_0090 rluA; 23S rRNA pseudouridylate 746 synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D SCH_1716 yciL; putative ribosomal large subunit pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SCH_1134 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D SCH_2665 rluD; pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA) K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SCH_1188 ymfC; putative ribosomal large subunit pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D SCH_4072 yjbC; putative pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D SCH_2653 yfiF; putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] B ribosomal protein modification factors C SCH_4406 rimI; modification of 30S ribosomal subunit protein S18; acetylation of N-terminal alanine K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SCH_1115 rimJ; acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C SCH_0868 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C SCH_1607 rimL; acetyl transferase, modifies N-terminal serine of 50S ribosomal subunit protein L7/L12 K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] C SCH_2676 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM C SCH_0847 yliG; putative Fe-S oxidoreductases family 1 K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C SCH_0929 ycaO; putative cytoplasmic protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C SCH_3321 prmA; methylation of 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C SCH_2387 yfcB; putative methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C SCH_1180 ycfD; putative cytoplasmic protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C SCH_2576 rnc; RNase III, ds RNA K03685 rnc; ribonuclease III [EC:3.1.26.3] C SCH_1132 rne; RNase E K08300 rne; ribonuclease E [EC:3.1.26.12] C SCH_3308 cafA; RNase G K08301 rng; ribonuclease G [EC:3.1.26.-] C SCH_3037 yqgF; putative endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C SCH_1650 dbpA; ATP-dependent RNA helicase, stimulated by 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] C SCH_3221 deaD; cysteine sulfinate desulfinase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C SCH_2648 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] B GTPases C SCH_2575 era; GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division K03595 era; GTPase C SCH_4228 yjeQ; putative GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C SCH_2516 engA; putative GTP-binding protein K03977 engA; GTPase C SCH_3239 yhbZ; putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] C SCH_4238 hflX; putative GTP-ase, together with HflCK possibly involved in phage lambda cII repressor stability K03665 hflX; GTPase B Other maturation factors C SCH_3338 yrdC; putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C SCH_3666 spoT; (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C SCH_3226 rbfA; tRNA pseudouridine 5S synthase K02834 rbfA; ribosome-binding factor A C SCH_3229 yhbC; Hypothetical protein yhbC K09748 rimP; ribosome maturation factor RimP C SCH_0580 ybcJ; putative cytoplasmic protein K14761 rlbA; ribosome-associated protein C SCH_0672 ybeB; putative ACR, homolog of plant Iojap protein K09710 ybeB; ribosome-associated protein C SCH_0696 ybeY; putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor C SCH_3236 yhbY; putative RNA-binding protein containing KH domain K07574 yhbY; RNA-binding protein C SCH_3613 yibL; putative cytoplasmic protein K14762 yibL; ribosome-associated protein C SCH_4291 yjgA; putative cytoplasmic protein K09889 yjgA; ribosome-associated protein C SCH_1018 rmf; ribosome modulation factor (involved in dimerization of 70S ribosomes) K03812 rmf; ribosome modulation factor C SCH_3259 yhbH; putative sigma N modulation factor K05808 hpf; ribosome hibernation promoting factor C SCH_2668 yfiA; ribosome associated factor, stabilizes ribosomes against dissociation K05809 raiA; ribosome-associated inhibitor A C SCH_1566 rpsV; 30S ribosomal subunit protein S22 K02972 sra; stationary-phase-induced ribosome-associated protein C SCH_1778 ychF; putative GTP-binding protein K06942 ychF; ribosome-binding ATPase C SCH_1138 yceD; putative metal-binding K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 22, 2025