+E Ribosome biogenesis KO
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Ribosome Biogenesis - Salmonella enterica subsp. enterica serovar Cubana
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D CFSAN002050_19850 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D CFSAN002050_05160 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C CFSAN002050_19845 GTPase Era K03595 era; GTPase
C CFSAN002050_23475 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C CFSAN002050_07460 dksA; transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
C CFSAN002050_23400 nusA; peptidase M54 K02600 nusA; transcription termination/antitermination protein NusA
C CFSAN002050_08690 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C CFSAN002050_03565 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D CFSAN002050_18110 16S rRNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D CFSAN002050_06900 ksgA; 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CFSAN002050_24015 16S rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CFSAN002050_06265 rsmC; 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D CFSAN002050_24810 rsmD; 16S rRNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CFSAN002050_21825 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CFSAN002050_15725 yebU; rRNA methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D CFSAN002050_02250 gidB; 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CFSAN002050_07045 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CFSAN002050_23280 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CFSAN002050_24915 methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D CFSAN002050_15650 rrmA; 23S rRNA methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D CFSAN002050_05255 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CFSAN002050_23450 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D CFSAN002050_10705 23S rRNA methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D CFSAN002050_23090 23S rRNA methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D CFSAN002050_09815 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CFSAN002050_11790 23S rRNA methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D CFSAN002050_24935 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D CFSAN002050_11700 rlmL; 23S rRNA methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D CFSAN002050_21255 23S rRNA methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D CFSAN002050_19575 50S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CFSAN002050_21145 rumA; 23S rRNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D CFSAN002050_10960 rumB; 23S rRNA methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D CFSAN002050_06925 23S rRNA/tRNA pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CFSAN002050_15065 23S rRNA pseudouridylate synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CFSAN002050_12320 23S rRNA pseudouridylate synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D CFSAN002050_19990 23S rRNA/tRNA pseudouridine synthase A K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CFSAN002050_12575 hypothetical protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D CFSAN002050_03780 23S rRNA pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D CFSAN002050_19920 methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C CFSAN002050_06275 rimI; alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C CFSAN002050_12225 alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C CFSAN002050_10925 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C CFSAN002050_14455 ribosomal-protein-L7/L12-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C CFSAN002050_20045 rimM; 16S rRNA-processing protein M K02860 rimM; 16S rRNA processing protein RimM
C CFSAN002050_10845 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C CFSAN002050_11220 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C CFSAN002050_23885 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C CFSAN002050_18855 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C CFSAN002050_12535 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C CFSAN002050_19850 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C CFSAN002050_12315 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C CFSAN002050_23820 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C CFSAN002050_21840 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C CFSAN002050_14700 RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C CFSAN002050_23365 RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C CFSAN002050_19895 RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C CFSAN002050_19845 GTPase Era K03595 era; GTPase
C CFSAN002050_05155 GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C CFSAN002050_19545 GTP-binding protein Der K03977 engA; GTPase
C CFSAN002050_23475 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C CFSAN002050_05220 GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C CFSAN002050_23985 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C CFSAN002050_01630 bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C CFSAN002050_23390 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C CFSAN002050_23405 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
C CFSAN002050_09315 ribosome-associated protein K14761 rlbA; ribosome-associated protein
C CFSAN002050_09820 ribosome-associated protein K09710 ybeB; ribosome-associated protein
C CFSAN002050_09955 metal-binding heat shock protein K07042 ybeY; probable rRNA maturation factor
C CFSAN002050_23455 RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
C CFSAN002050_25415 hypothetical protein K14762 yibL; ribosome-associated protein
C CFSAN002050_05590 hypothetical protein K09889 yjgA; ribosome-associated protein
C CFSAN002050_23570 ribosome hibernation promoting factor HPF K05808 hpf; ribosome hibernation promoting factor
C CFSAN002050_20000 translation inhibitor protein RaiA K05809 raiA; ribosome-associated inhibitor A
C CFSAN002050_14220 rpsV; 30S ribosomal protein S22 K02972 sra; stationary-phase-induced ribosome-associated protein
C CFSAN002050_15390 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C CFSAN002050_12340 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024