+E Ribosome biogenesis KO
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Ribosome Biogenesis - Salmonella enterica subsp. enterica serovar Typhimurium UK-1
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D STMUK_2613 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D STMUK_4335 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C STMUK_2612 era; GTP-binding protein Era K03595 era; GTPase
C STMUK_3287 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C STMUK_0188 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
C STMUK_3271 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C STMUK_0424 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C STMUK_4131 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D STMUK_2252 rsuA; 16S rRNA pseudouridylate synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D STMUK_0091 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D STMUK_3394 sun; 16S rRNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D STMUK_4543 rsmC; 16S ribosomal RNA m2G1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D STMUK_3557 rsmD; 16S rRNA m(2)G966-methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D STMUK_3082 yggJ; 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D STMUK_1823 yebU; rRNA (cytosine-C(5)-)-methyltransferase RsmF K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D STMUK_3862 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D STMUK_0122 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D STMUK_3247 yraL; putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D STMUK_3578 yhiQ; putative methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D STMUK_1808 rrmA; 23S rRNA methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D STMUK_4354 yjfH; 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D STMUK_3282 rrmJ; 23S rRNA methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D STMUK_0830 ybiN; putative SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D STMUK_3209 ygjO; putative methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D STMUK_0646 ybeA; rRNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D STMUK_1049 yccW; putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D STMUK_3581 yhiR; putative cytoplasmic protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D STMUK_1030 rlmL; 23S rRNA m(2)G2445 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D STMUK_2968 ygdE; putative RNA 2'-O-ribose methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D STMUK_2557 yfgB; ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D STMUK_2946 rumA; 23S rRNA 5-methyluridine methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D STMUK_0888 rumB; 23S rRNA methyluridine methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D STMUK_0096 rluA; 23S rRNA/tRNA pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D STMUK_1691 yciL; 23S rRNA pseudouridylate synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D STMUK_1154 rluC; 23S rRNA pseudouridylate synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D STMUK_2698 rluD; 23S rRNA pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D STMUK_1205 ymfC; putative ribosomal large subunit pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D STMUK_4177 yjbC; 23S rRNA pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D STMUK_2684 yfiF; putative methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C STMUK_4545 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C STMUK_1135 rimJ; ribosomal-protein-S5-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C STMUK_0881 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C STMUK_1580 rimL; ribosomal-protein-L7/L12-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C STMUK_2710 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C STMUK_0857 rimO; ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C STMUK_0941 ycaO; putative cytoplasmic protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C STMUK_3369 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C STMUK_2415 yfcB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C STMUK_1197 ycfD; putative cytoplasmic protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C STMUK_2613 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C STMUK_1153 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C STMUK_3356 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C STMUK_3085 yqgF; Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C STMUK_1624 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C STMUK_3264 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C STMUK_2679 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C STMUK_2612 era; GTP-binding protein Era K03595 era; GTPase
C STMUK_4334 yjeQ; ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C STMUK_2551 engA; GTP-binding protein EngA K03977 engA; GTPase
C STMUK_3287 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C STMUK_4347 hflX; putative GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C STMUK_3388 yrdC; putative ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C STMUK_3728 spoT; bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C STMUK_3269 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C STMUK_3272 yhbC; hypothetical protein K09748 rimP; ribosome maturation factor RimP
C STMUK_0548 ybcJ; hypothetical protein K14761 rlbA; ribosome-associated protein
C STMUK_0647 ybeB; hypothetical protein K09710 ybeB; ribosome-associated protein
C STMUK_0673 ybeY; putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C STMUK_3283 yhbY; RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
C STMUK_3675 yibL; hypothetical protein K14762 yibL; ribosome-associated protein
C STMUK_4422 yjgA; hypothetical protein K09889 yjgA; ribosome-associated protein
C STMUK_1035 rmf; ribosome modulation factor K03812 rmf; ribosome modulation factor
C STMUK_3307 yhbH; putative sigma(54) modulation protein K05808 hpf; ribosome hibernation promoting factor
C STMUK_2700 yfiA; translation inhibitor protein RaiA K05809 raiA; ribosome-associated inhibitor A
C STMUK_1534 sra; 30S ribosomal subunit S22 K02972 sra; stationary-phase-induced ribosome-associated protein
C STMUK_1756 ychF; GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
C STMUK_1158 yceD; hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024