+D Transcription factors KO #

  Transcription Factors - Staphylococcus epidermidis PM221

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family D SEB_02305 LysR-type transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D SEB_01796 Lactose phosphotransferase system repressor K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor D SEB_00389 Transcriptional repressor of the fructose operon,DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D SEB_01271 CBS domain protein, lmo1865 homolog K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator C LacI family D SEB_01433 Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SEB_01656 Sucrose operon repressor ScrR, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor C GntR family D SEB_00933 Transcriptional regulator in cluster with Zn-dependent hydrolase K03710 K03710; GntR family transcriptional regulator D SEB_02260 Predicted transcriptional regulator of pyridoxine metabolism K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D SEB_02053 Gluconate operon transcriptional repressor K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor C TetR/AcrR family C Lrp/AsnC family D SEB_00193 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family D SEB_00377 Transcriptional regulator MgrA (Regulator of autolytic activity) K18906 mgrA; MarR family transcriptional regulator, multiple gene regulator MgrA D SEB_01459 Repressor of toxins Rot K20338 rot; MarR family transcriptional regulator, global regulator for virulence D SEB_01944 Teicoplanin-resistance associated HTH-type transcriptional regulator TcaR K21454 tcaR; MarR family transcriptional regulator, teicoplanin-associated locus regulator D SEB_01973 Transcriptional regulator SarZ (Staphylococcal accessory regulator Z) K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D SEB_02187 Transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D SEB_00964 FemC, factor involved in methicillin resistance / Glutamine synthetase repressor K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor C Fur family D SEB_01203 Ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D SEB_01261 Zinc uptake regulation protein ZUR K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D SEB_01531 Peroxide stress regulator PerR, FUR family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family D SEB_02215 Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator C Rrf2 family D SEB_01330 Iron-sulfur cluster regulator IscR K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D SEB_00089 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D SEB_00092 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D SEB_00056 CadX K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D SEB_02343 CadX K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D SEB_01756 Zn(II) or Co(II)-specific transcriptional repressor protein K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor C XRE family C PadR family D SEB_01930 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator C Other families D SEB_00329 Mn-dependent transcriptional regulator MntR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D SEB_01912 Transcriptional regulator, RpiR family K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator D SEB_01593 Beta-lactamase repressor BlaI K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D SEB_01169 Biotin-protein ligase / Biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D SEB_02170 hypothetical protein K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator D SEB_02282 Pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D SEB_01660 Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) K01926 rex; redox-sensing transcriptional repressor D SEB_00911 GTP-sensing transcriptional pleiotropic repressor codY K03706 codY; transcriptional pleiotropic repressor D SEB_02381 Transcriptional regulator, Cro/CI family K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D SEB_01685 Programmed cell death antitoxin YdcD K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D SEB_01063 Transcription antiterminator K03480 glcT; transcriptional antiterminator D SEB_02227 Activator of the mannose operon (transcriptional antiterminator), BglG family K02538 manR; mannose operon transcriptional activator C Others D SEB_01697 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D SEB_02373 Chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SEB_02405 Chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SEB_00954 Glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator D SEB_01221 Arginine pathway regulatory protein ArgR,repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism D SEB_01290 Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D SEB_01704 Thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D SEB_02063 thiamine phosphate synthase K10810 tenI; thiazole tautomerase (transcriptional regulator TenI) [EC:5.3.99.10] D SEB_00207 transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D SEB_00472 Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator D SEB_00853 Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D SEB_01385 Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D SEB_00708 Competence transcription factor K02250 comK; competence protein ComK D SEB_00832 Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 18, 2025 #
Classification taken and modified from TRANSFAC 7.0