+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Saccharomyces eubayanus</h2>
%<!-- w=600, -->
!
A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        DI49_1259 ABD1-like protein	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        DI49_1187 CDC28-like protein	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        DI49_0962 hypothetical protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        DI49_1844 CEG1-like protein	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
E        DI49_4263 CTL1-like protein	K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74] 
E        DI49_5240 CET1-like protein	K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74] 
D      Cap binding complex
E        DI49_4214 STO1-like protein	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        DI49_5288 CBC2-like protein	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        DI49_5071 CLP1-like protein	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        DI49_0410 PCF11-like protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        DI49_0478 CFT1-like protein	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        DI49_3641 CFT2-like protein	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        DI49_3787 YSH1-like protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        DI49_5551 YTH1-like protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        DI49_3101 FIP1-like protein	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        DI49_3315 MPE1-like protein	K15541 MPE1; protein MPE1 
E        DI49_4433 PFS2-like protein	K15542 PFS2; polyadenylation factor subunit 2 
E        DI49_3354 SWD2-like protein	K14962 WDR82; COMPASS component SWD2 
E        DI49_0383 REF2-like protein	K15543 REF2; RNA end formation protein 2 
E        DI49_4073 PPZ1-like protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        DI49_5286 PPQ1-like protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        DI49_0604 PPZ2-like protein	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        DI49_4522 SSU72-like protein	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        DI49_1923 RNA15-like protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        DI49_2119 PTI1-like protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        DI49_4150 RNA14-like protein	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        DI49_0018 PTA1-like protein	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        DI49_1428 SMB1-like protein	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        DI49_3672 SMD3-like protein	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        DI49_4993 SME1-like protein	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        DI49_5626 SMX3-like protein	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        DI49_1637 SMX2-like protein	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        DI49_3641 CFT2-like protein	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        DI49_3787 YSH1-like protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        DI49_1923 RNA15-like protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        DI49_2119 PTI1-like protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        DI49_0018 PTA1-like protein	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        DI49_2023 SPT4-like protein	K15171 SUPT4H1; transcription elongation factor SPT4 
E        DI49_4079 SPT5-like protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        DI49_1787 IME4-like protein	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        DI49_0705 KAR4-like protein	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
D      Poly(A) addition factors
E        DI49_3374 PAP1-like protein	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
C    Other processing factors
D      DI49_4918 RTS2-like protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      DI49_1852 NAB2-like protein	K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        DI49_0984 SUB2-like protein	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        DI49_0219 FAL1-like protein	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
D      TREX complex
E        DI49_4595 THO2-like protein	K12879 THOC2; THO complex subunit 2 
E        DI49_4494 TEX1-like protein	K12880 THOC3; THO complex subunit 3 
E        DI49_0330 HPR1-like protein	K18712 HPR1; THO complex subunit HPR1 
E        DI49_2571 THP2-like protein	K18713 THP2; THO complex subunit THP2 
E        DI49_4029 MFT1-like protein	K18714 MFT1; THO complex subunit MFT1 
D      TREX-2 complex
E        DI49_2332 THP1-like protein	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        DI49_0541 SEM1-like protein	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        DI49_5078 CDC31-like protein	K16466 CETN3; centrin-3 
E        DI49_0347 SAC3-like protein	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        DI49_2638 MLP2-like protein	K09291 TPR; nucleoprotein TPR 
E        DI49_3464 MLP1-like protein	K09291 TPR; nucleoprotein TPR 
E        DI49_1513 GLE2-like protein	K14298 RAE1; mRNA export factor 
E        DI49_3722 SEC13-like protein	K14004 SEC13; protein transport protein SEC13 
E        DI49_3048 NUP85-like protein	K14304 NUP85; nuclear pore complex protein Nup85 
E        DI49_2078 NUP57-like protein	K14308 NUP54; nuclear pore complex protein Nup54 
E        DI49_1655 NIC96-like protein	K14309 NUP93; nuclear pore complex protein Nup93 
E        DI49_3305 NUP100-like protein	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        DI49_4135 NUP116-like protein	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        DI49_0954 NUP84-like protein	K14301 NUP107; nuclear pore complex protein Nup107 
E        DI49_3452 NUP133-like protein	K14300 NUP133; nuclear pore complex protein Nup133 
E        DI49_3989 NUP188-like protein	K14311 NUP188; nuclear pore complex protein Nup188 
E        DI49_0108 NUP170-like protein	K14312 NUP155; nuclear pore complex protein Nup155 
E        DI49_1511 NUP157-like protein	K14312 NUP155; nuclear pore complex protein Nup155 
E        DI49_3317 NUP120-like protein	K14303 NUP160; nuclear pore complex protein Nup160 
E        DI49_4237 NUP53-like protein	K14313 NUP35; nuclear pore complex protein Nup53 
E        DI49_2978 NUP192-like protein	K14310 NUP205; nuclear pore complex protein Nup205 
E        DI49_1804 NUP49-like protein	K14307 NUPL1; nucleoporin p58/p45 
E        DI49_4058 NDC1-like protein	K14315 NDC1; nucleoporin NDC1 
E        DI49_1872 SEH1-like protein	K14299 SEH1; nucleoporin SEH1 
E        DI49_2671 NUP159-like protein	K18715 NUP159; nucleoporin NUP159 
E        DI49_0979 ASM4-like protein	K18717 ASM4; nucleoporin ASM4 
E        DI49_0059 NUP60-like protein	K18718 NUP60; nucleoporin NUP60 
E        DI49_2954 NUP82-like protein	K18719 NUP82; nucleoporin NUP82 
E        DI49_4936 NUP1-like protein	K18721 NUP1; nucleoporin NUP1 
E        DI49_3838 NUP2-like protein	K18722 NUP2; nucleoporin NUP2 
E        DI49_5078 CDC31-like protein	K16466 CETN3; centrin-3 
E        DI49_0875 GLE1-like protein	K18723 GLE1; nucleoporin GLE1 
E        DI49_5296 MEX67-like protein	K14284 NXF; nuclear RNA export factor 
E        DI49_3196 MTR2-like protein	K14543 MTR2; mRNA transport regulator MTR2 
E        DI49_3546 POM34-like protein	K18724 POM34; nucleoporin POM34 
E        DI49_4218 POM152-like protein	K18725 POM152; nucleoporin POM152 
E        DI49_2761 SNL1-like protein	K14017 SNL1; HSP70 co-chaperone SNL1 
D      Ran-mediated transport factors
E        DI49_3800 GSP1-like protein	K07936 RAN; GTP-binding nuclear protein Ran 
E        DI49_5017 GSP2-like protein	K07936 RAN; GTP-binding nuclear protein Ran 
E        DI49_0977 UBX3-like protein	K18726 FAF2; FAS-associated factor 2 
E        DI49_0946 CDC48-like protein	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        DI49_2186 CRM1-like protein	K14290 XPO1; exportin-1 
E        DI49_4319 RNA1-like protein	K14319 RANGAP1; Ran GTPase-activating protein 1 
E        DI49_0601 NPL3-like protein	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      eIF4F and regulatory proteins
E        DI49_2269 CDC33-like protein	K03259 EIF4E; translation initiation factor 4E 
E        DI49_2886 TIF2-like protein	K03257 EIF4A; translation initiation factor 4A 
E        DI49_3430 TIF1-like protein	K03257 EIF4A; translation initiation factor 4A 
E        DI49_1918 TIF4632-like protein	K03260 EIF4G; translation initiation factor 4G 
E        DI49_2126 TIF4631-like protein	K03260 EIF4G; translation initiation factor 4G 
E        DI49_5607 TIF3-like protein	K03258 EIF4B; translation initiation factor 4B 
E        DI49_0691 KRE28-like protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        DI49_5032 DED1-like protein	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        DI49_5344 DBP1-like protein	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        DI49_5357 SYH1-like protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        DI49_1200 SMY2-like protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        DI49_1575 PAB1-like protein	K13126 PABPC; polyadenylate-binding protein 
E        DI49_3898 SKI2-like protein	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        DI49_2233 SLH1-like protein	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        DI49_3031 TMA22-like protein	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        DI49_2284 HRP1-like protein	K14411 MSI; RNA-binding protein Musashi 
E        DI49_3454 HBS1-like protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        DI49_4734 DOM34-like protein	K06965 PELO; protein pelota 
E        DI49_0750 hypothetical protein	K06965 PELO; protein pelota 
E        DI49_2780 hypothetical protein	K14396 PABPN1; polyadenylate-binding protein 2 
E        DI49_4339 GFD1-like protein	K18731 GFD1; mRNA transport factor GFD1 
E        DI49_4890 DBP5-like protein	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        DI49_0589 SYF1-like protein	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        DI49_1467 THO1-like protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        DI49_1877 SRM1-like protein	K11493 RCC1; regulator of chromosome condensation 
E        DI49_5501 THP3-like protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
E        DI49_3170 YRA2-like protein	K23799 YRA2; RNA annealing protein YRA2 
C    Surveillance factors
D      Surveillance complex
E        DI49_1172 SUP45-like protein	K03265 ETF1; peptide chain release factor subunit 1 
E        DI49_0362 SUP35-like protein	K03267 ERF3; peptide chain release factor subunit 3 
E        DI49_4170 NAM7-like protein	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        DI49_2483 NMD2-like protein	K14327 UPF2; regulator of nonsense transcripts 2 
E        DI49_2030 UPF3-like protein	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        DI49_0893 PPH22-like protein	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        DI49_0938 PPH21-like protein	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        DI49_0045 TPD3-like protein	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        DI49_1789 CDC55-like protein	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        DI49_2417 RTS1-like protein	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        DI49_5357 SYH1-like protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        DI49_1200 SMY2-like protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
C    Factors involved in mRNA localization
D      Cargo complex
E        DI49_3248 SHE2-like protein	K18736 SHE2; SWI5-dependent HO expression protein 2 
E        DI49_1160 SHE3-like protein	K18737 SHE3; SWI5-dependent HO expression protein 3 
E        DI49_0659 PUF6-like protein	K14844 PUF6; pumilio homology domain family member 6 
E        DI49_0147 HEK2-like protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        DI49_1119 HEK2-like protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        DI49_1255 PBP2-like protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        DI49_5142 MYO2-like protein	K10357 MYO5; myosin V 
E        DI49_0032 MYO4-like protein	K10357 MYO5; myosin V 
E        DI49_3197 ASH1-like protein	K18658 ASH1; transcriptional regulatory protein ASH1 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        DI49_5530 TEF1-like protein	K03231 EEF1A; elongation factor 1-alpha 
E        DI49_1149 TEF2-like protein	K03231 EEF1A; elongation factor 1-alpha 
E        DI49_2168 hypothetical protein	K03233 EEF1G; elongation factor 1-gamma 
E        DI49_5410 CAM1-like protein	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
E        DI49_0691 KRE28-like protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        DI49_0470 SSD1-like protein	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        DI49_1803 XRN1-like protein	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        DI49_2269 CDC33-like protein	K03259 EIF4E; translation initiation factor 4E 
E        DI49_4170 NAM7-like protein	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        DI49_5032 DED1-like protein	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        DI49_5344 DBP1-like protein	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        DI49_0917 DHH1-like protein	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        DI49_5573 SCD6-like protein	K18749 LSM14; protein LSM14 
E        DI49_0196 KAP104-like protein	K18752 TNPO1; transportin-1 
E        DI49_2863 TPK1-like protein	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        DI49_3214 TPK3-like protein	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        DI49_5264 hypothetical protein	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        DI49_0719 SRO9-like protein	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        DI49_4617 DCP2-like protein	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        DI49_2259 DCP1-like protein	K12612 DCP1; mRNA-decapping enzyme subunit 1 
E        DI49_2899 LSM1-like protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        DI49_0155 LSM2-like protein	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        DI49_3934 LSM3-like protein	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        DI49_1517 LSM4-like protein	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        DI49_1554 LSM5-like protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        DI49_4589 LSM7-like protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        DI49_3035 LSM8-like protein	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        DI49_5142 MYO2-like protein	K10357 MYO5; myosin V 
E        DI49_0032 MYO4-like protein	K10357 MYO5; myosin V 
E        DI49_3969 TUB3-like protein	K07374 TUBA; tubulin alpha 
E        DI49_4005 TUB1-like protein	K07374 TUBA; tubulin alpha 
E        DI49_0835 CDC39-like protein	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        DI49_0913 CDC36-like protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        DI49_2741 NOT3-like protein	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        DI49_5524 NOT5-like protein	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        DI49_1472 MOT2-like protein	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        DI49_0040 CCR4-like protein	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        DI49_4785 POP2-like protein	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        DI49_1881 PAN2-like protein	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        DI49_3345 PAN3-like protein	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        DI49_1760 EDC1-like protein	K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
E        DI49_1434 EDC2-like protein	K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
E        DI49_1376 EDC3-like protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        DI49_2483 NMD2-like protein	K14327 UPF2; regulator of nonsense transcripts 2 
E        DI49_2030 UPF3-like protein	K14328 UPF3; regulator of nonsense transcripts 3 
E        DI49_0579 RPB7-like protein	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        DI49_0550 hypothetical protein	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        DI49_4721 PUB1-like protein	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        DI49_1575 PAB1-like protein	K13126 PABPC; polyadenylate-binding protein 
E        DI49_2014 hypothetical protein	K15026 EIF2A; translation initiation factor 2A 
E        DI49_5175 PRT1-like protein	K03253 EIF3B; translation initiation factor 3 subunit B 
E        DI49_2886 TIF2-like protein	K03257 EIF4A; translation initiation factor 4A 
E        DI49_3430 TIF1-like protein	K03257 EIF4A; translation initiation factor 4A 
E        DI49_0219 FAL1-like protein	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        DI49_5607 TIF3-like protein	K03258 EIF4B; translation initiation factor 4B 
E        DI49_1918 TIF4632-like protein	K03260 EIF4G; translation initiation factor 4G 
E        DI49_2126 TIF4631-like protein	K03260 EIF4G; translation initiation factor 4G 
E        DI49_4204 ASC1-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        DI49_5296 MEX67-like protein	K14284 NXF; nuclear RNA export factor 
E        DI49_4716 HDA1-like protein	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        DI49_2259 DCP1-like protein	K12612 DCP1; mRNA-decapping enzyme subunit 1 
E        DI49_4617 DCP2-like protein	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        DI49_0917 DHH1-like protein	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        DI49_1760 EDC1-like protein	K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
E        DI49_1434 EDC2-like protein	K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
E        DI49_1376 EDC3-like protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
D      Lsm complex
E        DI49_2899 LSM1-like protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        DI49_0155 LSM2-like protein	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        DI49_3934 LSM3-like protein	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        DI49_1517 LSM4-like protein	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        DI49_1554 LSM5-like protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        DI49_4589 LSM7-like protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        DI49_3035 LSM8-like protein	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        DI49_1803 XRN1-like protein	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        DI49_4892 RAT1-like protein	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        DI49_3779 DCS1-like protein	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        DI49_4514 CSL4-like protein	K07573 CSL4; exosome complex component CSL4 
E        DI49_2472 RRP4-like protein	K03679 RRP4; exosome complex component RRP4 
E        DI49_2266 RRP40-like protein	K03681 RRP40; exosome complex component RRP40 
E        DI49_2162 SKI6-like protein	K11600 RRP41; exosome complex component RRP41 
E        DI49_2054 RRP46-like protein	K12590 RRP46; exosome complex component RRP46 
E        DI49_2121 MTR3-like protein	K12587 MTR3; exosome complex component MTR3 
E        DI49_0959 RRP42-like protein	K12589 RRP42; exosome complex component RRP42 
E        DI49_0787 RRP43-like protein	K12586 RRP43; exosome complex component RRP43 
E        DI49_0458 RRP45-like protein	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        DI49_2380 DIS3-like protein	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        DI49_2403 RRP6-like protein	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        DI49_2488 LRP1-like protein	K12592 C1D; exosome complex protein LRP1 
E        DI49_4758 MPP6-like protein	K12594 MPP6; M-phase phosphoprotein 6, fungi type 
E        DI49_4917 SKI7-like protein	K12595 SKI7; superkiller protein 7 
D      TRAMP complex
E        DI49_2290 PAP2-like protein	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        DI49_2704 AIR1-like protein	K12597 AIR1_2; protein AIR1/2 
E        DI49_0904 AIR2-like protein	K12597 AIR1_2; protein AIR1/2 
E        DI49_2965 MTR4-like protein	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
E        DI49_4449 TRF5-like protein	K12596 TRF5; poly(A) RNA polymerase 
D      Ski complex
E        DI49_3898 SKI2-like protein	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        DI49_5633 SKI3-like protein	K12600 SKI3; superkiller protein 3 
E        DI49_1765 SKI8-like protein	K12601 SKI8; superkiller protein 8 
D      Ccr4-NOT complex
E        DI49_0040 CCR4-like protein	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        DI49_0835 CDC39-like protein	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        DI49_0913 CDC36-like protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        DI49_2741 NOT3-like protein	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        DI49_5524 NOT5-like protein	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        DI49_1472 MOT2-like protein	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        DI49_4785 POP2-like protein	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        DI49_4459 CAF40-like protein	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        DI49_1627 CAF16-like protein	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        DI49_3703 SKG3-like protein	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
E        DI49_4472 CAF120-like protein	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
D      Pan complex
E        DI49_1881 PAN2-like protein	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        DI49_3345 PAN3-like protein	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        DI49_3779 DCS1-like protein	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        DI49_5173 VTS1-like protein	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        DI49_4324 RNT1-like protein	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        DI49_3587 REX2-like protein	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        DI49_2218 ENO1-like protein	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        DI49_2577 ENO2-like protein	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        DI49_2204 PFK1-like protein	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        DI49_4289 PFK2-like protein	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        DI49_3052 SSC1-like protein	K04043 dnaK; molecular chaperone DnaK 
E        DI49_3869 SSQ1-like protein	K04043 dnaK; molecular chaperone DnaK 
E        DI49_1362 ECM10-like protein	K04043 dnaK; molecular chaperone DnaK 
E        DI49_3770 HSP60-like protein	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        DI49_1073 TCM62-like protein	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        DI49_2472 RRP4-like protein	K03679 RRP4; exosome complex component RRP4 
E        DI49_4514 CSL4-like protein	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        DI49_2162 SKI6-like protein	K11600 RRP41; exosome complex component RRP41 
E        DI49_0959 RRP42-like protein	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
#[ <a href="/kegg/brite.html">BRITE</a> | <a href="/kegg/kegg2.html">KEGG2</a> | <a href="/kegg/">KEGG</a> ]<br>
#Last updated: April 25, 2024