+E Ribosome biogenesis KO
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Ribosome Biogenesis - Salmonella enterica subsp. enterica serovar Typhimurium D23580
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D STMMW_25971 RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D STMMW_42981 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C STMMW_25961 GTP-binding protein K03595 era; GTPase
C STMMW_33001 probable GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C STMMW_01921 dosage-dependent dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C STMMW_32871 L factor K02600 nusA; transcription termination/antitermination protein NusA
C STMMW_04881 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C STMMW_41011 transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D STMMW_22531 ribosomal small subunit pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D STMMW_00951 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D STMMW_34011 16S rRNA methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D STMMW_44991 conserved hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D STMMW_35611 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D STMMW_30551 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D STMMW_18391 conserved hypothetical protein K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D STMMW_38571 glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D STMMW_01261 S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D STMMW_32631 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D STMMW_35821 conserved hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D STMMW_18271 rRNA guanine-N1-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D STMMW_43131 probable tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D STMMW_32961 cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D STMMW_08771 conserved hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D STMMW_32211 conserved hypothetical protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D STMMW_07061 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D STMMW_10931 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D STMMW_35851 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D STMMW_10741 conserved hypothetical protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D STMMW_29431 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D STMMW_25421 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D STMMW_29201 Uracil-5--methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D STMMW_09331 hypothetical RNA methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D STMMW_01001 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D STMMW_17151 putative pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D STMMW_11951 ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D STMMW_26781 ftsH suppressor protein SfhB K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D STMMW_12471 putative ribosomal large subunit pseudouridine synthase B K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D STMMW_41421 putative pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D STMMW_26681 putative RNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C STMMW_45011 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C STMMW_11751 ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C STMMW_09261 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C STMMW_16061 ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C STMMW_26891 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C STMMW_09031 conserved hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C STMMW_09861 conserved hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C STMMW_33811 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C STMMW_24071 conserved hypothetical protein K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C STMMW_12391 conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C STMMW_25971 RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C STMMW_11931 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C STMMW_33681 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C STMMW_30581 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C STMMW_16511 ATP-independent RNA helicase (DbpA) K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C STMMW_32801 ATP-dependent RNA helicase (dead-box protein) K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C STMMW_26631 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C STMMW_25961 GTP-binding protein K03595 era; GTPase
C STMMW_42971 putative membrane protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C STMMW_25361 GTP-binding protein engA K03977 engA; GTPase
C STMMW_33001 probable GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C STMMW_43071 HflX protein, putative GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C STMMW_33951 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C STMMW_37311 CG Site No. 156 K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C STMMW_32851 ribosome-binding factor A (P15B protein) K02834 rbfA; ribosome-binding factor A
C STMMW_32881 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C STMMW_06091 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C STMMW_07071 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C STMMW_07331 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C STMMW_32971 conserved hypothetical protein K07574 yhbY; RNA-binding protein
C STMMW_36771 conserved hypothetical protein K14762 yibL; ribosome-associated protein
C STMMW_43791 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C STMMW_10791 ribosome modulation factor (protein E) K03812 rmf; ribosome modulation factor
C STMMW_33201 probable sigma(54) modulation protein K05808 hpf; ribosome hibernation promoting factor
C STMMW_26801 putative sigma(54) modulation protein K05809 raiA; ribosome-associated inhibitor A
C STMMW_15601 30S ribosomal protein S22 K02972 sra; stationary-phase-induced ribosome-associated protein
C STMMW_17761 putative ATP/GTP-binding protein K06942 ychF; ribosome-binding ATPase
C STMMW_11991 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024