+E Transcription factors KO #

  Transcription Factors - Shigella flexneri 301 (serotype 2a)

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D SF2005 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D SF0059 araC; DNA-binding transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D SF4377 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D SF3983 rhaR; transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D SF3982 rhaS; transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D SF4107 adiY; AraC family transcriptional regulator K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D SF0467 envY; envelope protein K11920 envY; AraC family transcriptional regulator D SF4122 soxS; DNA-binding transcriptional regulator SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D SF1563 marA; DNA-binding transcriptional activator MarA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator D SF4428 rob; right oriC-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D SF3596 yhiW; AraC family transcriptional regulator K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator D SF3595 yhiX; DNA-binding transcriptional regulator GadX K21905 gadX; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator D SF4105 melR; DNA-binding transcriptional regulator MelR K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D SF2297 ada; bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D SF2822 gcvA; DNA-binding transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SF3849 ilvY; DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D SF3906 metR; DNA-binding transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D SF0017 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D SF4043 oxyR; DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SF2901 iciA; chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D SF0071 leuO; transcriptional activator for leuABCD operon K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D SF2584 hcaR; DNA-binding transcriptional regulator HcaR K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator D SF3158 tdcA; DNA-binding transcriptional activator TdcA K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator D SF0443 ybbS; DNA-binding transcriptional activator AllS K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon D SF1277 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D SF2056 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D SF2057 nac; nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D SF4191 yjiE; cell density-dependent motility repressor K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D SF3282 yhcS; transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D SF3101 ygiP; transcriptional activator TtdR K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon D SF3839 yifA; transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D SF0793 deoR; DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D SF4216 DeoR family transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D SF3445 glpR; DNA-binding transcriptional repressor GlpR K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D SF2150 gatR; galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor D SF3166 agaR; DNA-binding transcriptional regulator AgaR K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D SF2819 fucR; DNA-binding transcriptional activator FucR K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D SF2730 srlR; DNA-binding transcriptional repressor SrlR K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor D SF4346 yjfQ; transcriptional repressor UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor D SF3956 yihW; DeoR family transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor C LacI family D SF2236 galS; DNA-binding transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SF3836 rbsR; transcriptional repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SF2847 galR; DNA-binding transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SF4012 cytR; DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D SF0075 fruR; DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D SF4249 treR; trehalose repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D SF2737 ascG; ascBF operon repressor K03487 ascG; LacI family transcriptional regulator, asc operon repressor D SF3460 gntR; gluconate operon transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SF3115 ebgR; DNA-binding transcriptional repressor EbgR K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor D SF1646 malI; DNA-binding transcriptional repressor MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein C GntR family D SF3779 yidP; transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator D SF3393 yhfR; DNA-binding transcriptional regulator FrlR K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator D SF0567 farR; DNA-binding transcriptional repressor MngR K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D SF1176 fadR; fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D SF0110 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SF3019 glcC; DNA-binding transcriptional regulator GlcC K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator D SF4196 uxuR; DNA-binding transcriptional repressor UxuR K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D SF3137 exuR; DNA-binding transcriptional repressor ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D SF3643 lldR; DNA-binding transcriptional repressor LldR K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator D SF3769 yidW; dgo operon regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor D SF3262 yhcK; transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor D SF1765 colanic acid/biofilm transcriptional regulator K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator D SF2691 ygaE; DNA-binding transcriptional regulator CsiR K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D SF4388 yjjM; hypothetical protein K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism C TetR/AcrR family D SF0409 acrR; DNA-binding transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D SF3680 ttk; transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D SF1016 ycdC; HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator D SF1676 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SF1641 uidR; uid operon repressor K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D SF4240 yjgJ; hypothetical protein K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D SF1115 ycfQ; hypothetical protein K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D SF4045 yijC; DNA-binding transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D SF0746 ybiH; DNA-binding transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D SF0799 DeoR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D SF3823 asnC; DNA-binding transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D SF0848 lrp; leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SF0392 ybaO; LRP-like transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D SF1959 sdiA; ftsQAZ gene cluster transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D SF1996 rcsA; colanic acid capsular biosynthesis activation protein A K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor D SF1034 csgD; DNA-binding transcriptional regulator CsgD K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D SF3541 yhiF; hypothetical protein K21901 dctR; LuxR family transcriptional regulator, dicarboxylate transport regulator D SF4399 bglJ; 2-component transcriptional regulator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides D SF3546 yhiE; hypothetical protein K21907 gadE; LuxR family transcriptional regulator, glutamate-dependent acid resistance regulator C MarR family D SF1564 marR; multiple antibiotic resistance protein K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D SF1669 slyA; transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D SF2763 transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility C MerR family D SF0432 ybbI; DNA-binding transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D SF4123 soxR; redox-sensitivie transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D SF0610 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D SF4159 yjbK; regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D SF4084 iclR; aceBA operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D SF0445 ybbU; DNA-binding transcriptional repressor AllR K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons D SF1398 DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D SF3618 yiaJ; regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D SF3376 crp; DNA-binding transcriptional dual regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SF1836 fnr; fumarate/nitrate reduction transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D SF2248 yeiL; DNA-binding transcriptional activator YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D SF2578 DNA-binding transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D SF4333 yjeB; transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D SF3534 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D SF0767 manganese transport regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D SF2482 yfeT; transcriptional regulator MurR K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D SF1863 yebK; DNA-binding transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D SF4051 birA; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D SF3299 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D SF4425 trpR; Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D SF3228 nlp; DNA-binding transcriptional regulator Nlp K07724 ner; Ner family transcriptional regulator D SF0064 yabN; transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator D SF4422 nadR; nadAB transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D SF1304 ycjC; DNA-binding transcriptional repressor PuuR K14056 puuR; HTH-type transcriptional regulator, repressor for puuD D SF0876 transcriptional repressor DicA K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor D SF3122 ygjM; hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D SF2732 ygaA; 2-component transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D SF2748 fhlA; formate hydrogenlyase transcriptional activator FhlA K15836 fhlA; formate hydrogenlyase transcriptional activator D SF0543 modE; DNA-binding transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family D SF3499 yhhG; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D SF4016 metJ; transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D SF1549 relB; bifunctional antitoxin/transcriptional repressor RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family D SF3732 bglG; transcriptional antiterminator BglG K03488 licT; beta-glucoside operon transcriptional antiterminator C Others D SF2167 yohL; transcriptional repressor RcnR K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D SF0379 bolA; murein genes regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D CP0123 virB; transcriptional activator VirB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CP0032 parB; plasmid segregation protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SF3918 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH D SF3277 argR; arginine repressor ArgR K03402 argR; transcriptional regulator of arginine metabolism D SF0617 nagC; nag (N-acetylglucosamine) operon transcriptional repressor K02565 nagC; N-acetylglucosamine repressor D SF1615 mlc; NagC-like transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene D SF3635 mtlR; mannitol repressor protein K02562 mtlR; mannitol operon repressor D SF1329 tyrR; DNA-binding transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D SF2522 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D SF1308 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D SF1311 pspC; DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C D SF1582 ydeW; transcriptional regulator LsrR K11531 lsrR; lsr operon transcriptional repressor D SF1204 DNA-binding transcriptional regulator DhaR K05880 dhaR; transcriptional activator for dhaKLM operon D SF0528 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D SF2987 hypothetical protein K07733 alpA; prophage regulatory protein D SF2939 yqgE; hypothetical protein K07735 algH; putative transcriptional regulator D SF0031 caiF; transcriptional regulator K08277 caiF; transcriptional activator CaiF D SF0137 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor D SF0350 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D SF0288 crl; DNA-binding transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl D SF3444 rtcR; 2-component regulator K14414 rtcR; transcriptional regulatory protein RtcR D SF0875 DNA-binding transcriptional regulator DicC K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D SF0078 yabB; cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ D SF3064 hypothetical protein K07471 ygiV; probable transcriptional regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024 #
Classification taken and modified from TRANSFAC 7.0