+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sphingorhabdus sp. SMR4y

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SPHFLASMR4Y_01234 phrA; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SPHFLASMR4Y_00514 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SPHFLASMR4Y_03284 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SPHFLASMR4Y_01916 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E SPHFLASMR4Y_02727 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SPHFLASMR4Y_00201 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SPHFLASMR4Y_02749 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SPHFLASMR4Y_00139 ada; bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SPHFLASMR4Y_01234 phrA; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SPHFLASMR4Y_01838 phrB; (6-4) photolyase K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E SPHFLASMR4Y_00514 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SPHFLASMR4Y_00845 Uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SPHFLASMR4Y_01252 Uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SPHFLASMR4Y_03357 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SPHFLASMR4Y_01625 alkA; DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SPHFLASMR4Y_03284 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SPHFLASMR4Y_02854 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SPHFLASMR4Y_02754 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SPHFLASMR4Y_01916 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E SPHFLASMR4Y_02727 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SPHFLASMR4Y_01876 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SPHFLASMR4Y_03342 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SPHFLASMR4Y_02881 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SPHFLASMR4Y_00600 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SPHFLASMR4Y_02166 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SPHFLASMR4Y_03077 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E SPHFLASMR4Y_03310 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E SPHFLASMR4Y_01184 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E SPHFLASMR4Y_01213 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SPHFLASMR4Y_02166 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SPHFLASMR4Y_00600 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SPHFLASMR4Y_02009 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SPHFLASMR4Y_02010 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SPHFLASMR4Y_01407 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SPHFLASMR4Y_03325 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SPHFLASMR4Y_01050 mfd; transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SPHFLASMR4Y_01577 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SPHFLASMR4Y_00942 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SPHFLASMR4Y_03364 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SPHFLASMR4Y_01894 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SPHFLASMR4Y_01071 dnaE2; DNA polymerase K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SPHFLASMR4Y_00573 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SPHFLASMR4Y_01338 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SPHFLASMR4Y_02278 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SPHFLASMR4Y_00779 dnaX; DNA polymerase III subunit tau K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SPHFLASMR4Y_02292 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SPHFLASMR4Y_00956 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SPHFLASMR4Y_00600 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SPHFLASMR4Y_01213 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SPHFLASMR4Y_00366 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SPHFLASMR4Y_03338 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SPHFLASMR4Y_01310 recombinase A K03553 recA; recombination protein RecA E SPHFLASMR4Y_02211 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SPHFLASMR4Y_02210 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SPHFLASMR4Y_02212 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SPHFLASMR4Y_00141 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E SPHFLASMR4Y_01310 recombinase A K03553 recA; recombination protein RecA E SPHFLASMR4Y_00187 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E SPHFLASMR4Y_01461 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E SPHFLASMR4Y_01048 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SPHFLASMR4Y_02881 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SPHFLASMR4Y_01181 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SPHFLASMR4Y_00976 recR; recombination protein RecR K06187 recR; recombination protein RecR E SPHFLASMR4Y_00597 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SPHFLASMR4Y_02211 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SPHFLASMR4Y_02210 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SPHFLASMR4Y_02212 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E SPHFLASMR4Y_01062 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SPHFLASMR4Y_01063 PD-(D/E)XK nuclease superfamily protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SPHFLASMR4Y_01834 ATPase family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SPHFLASMR4Y_01013 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SPHFLASMR4Y_01927 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SPHFLASMR4Y_00826 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F SPHFLASMR4Y_03182 eukaryotic DNA topoisomerase I, catalytic core K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SPHFLASMR4Y_00953 hupB; DNA-binding protein HRm K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SPHFLASMR4Y_02881 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SPHFLASMR4Y_01181 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SPHFLASMR4Y_00976 recR; recombination protein RecR K06187 recR; recombination protein RecR F SPHFLASMR4Y_00600 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SPHFLASMR4Y_02628 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F SPHFLASMR4Y_03252 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F SPHFLASMR4Y_03391 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SPHFLASMR4Y_03077 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F SPHFLASMR4Y_03310 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SPHFLASMR4Y_02804 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SPHFLASMR4Y_01310 recombinase A K03553 recA; recombination protein RecA D SPHFLASMR4Y_01094 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D SPHFLASMR4Y_00597 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SPHFLASMR4Y_02693 recA-like protein K14160 imuA; protein ImuA D SPHFLASMR4Y_02692 DNA polymerase IV K14161 imuB; protein ImuB D SPHFLASMR4Y_02691 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SPHFLASMR4Y_00366 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SPHFLASMR4Y_03338 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SPHFLASMR4Y_01980 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SPHFLASMR4Y_02631 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D SPHFLASMR4Y_02261 cshB; DEAD-box ATP-dependent RNA helicase CshB K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D SPHFLASMR4Y_00201 mutT; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SPHFLASMR4Y_02749 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SPHFLASMR4Y_03398 nrdZ; vitamin B12-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SPHFLASMR4Y_03400 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024