+E Transcription factors KO #

  Transcription Factors - Shigella flexneri Shi06HN006 (serotype Yv)

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D SFyv_2936 Dcm K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D SFyv_0080 ArAC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D SFyv_6352 HpaA K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D SFyv_5759 transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D SFyv_5757 HTH-type transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D SFyv_2189 ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D SFyv_5963 AdiY K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D SFyv_3615 EutR K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D SFyv_0630 EnvY K11920 envY; AraC family transcriptional regulator D SFyv_5987 SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D SFyv_2297 multiple antibiotic resistance protein marA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator D SFyv_6428 hypothetical protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D SFyv_5198 hypothetical protein K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator D SFyv_5197 HTH-type transcriptional regulator GadX K21905 gadX; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator D SFyv_5958 MelR K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D SFyv_2106 hypothetical protein K25495 nimR; AraC family transcriptional regulator, regulator of nimT D SFyv_2107 transcriptional regulator, AraC family K25495 nimR; AraC family transcriptional regulator, regulator of nimT D SFyv_3339 regulatory protein ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D SFyv_4098 GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SFyv_5563 IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D SFyv_0025 Transcriptional activator protein nhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D SFyv_5853 OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SFyv_4208 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D SFyv_0094 leucine transcriptional activator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D SFyv_3748 DNA-binding transcriptional regulator HcaR K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator D SFyv_4584 HTH-type transcriptional regulator TdcA K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator D SFyv_0601 YbbS K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon D SFyv_1891 CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D SFyv_3007 Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D SFyv_3009 nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D SFyv_6086 YjiE K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D SFyv_4758 DNA-binding transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D SFyv_4499 YgiP K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon D SFyv_5554 HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D SFyv_1117 DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D SFyv_6124 transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D SFyv_4974 glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D SFyv_3110 deoR-like helix-turn-helix domain protein K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor D SFyv_4599 AgAR K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D SFyv_4093 L-fucose operon activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D SFyv_3960 SrlR K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor D SFyv_6307 HTH-type transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor D SFyv_5714 DEOR-type transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor C LacI family D SFyv_3246 DNA-binding transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SFyv_4133 GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SFyv_5547 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SFyv_5800 CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D SFyv_0099 Catabolite repressor/activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D SFyv_6164 TreR K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D SFyv_3971 AscG K03487 ascG; LacI family transcriptional regulator, asc operon repressor D SFyv_2472 HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D SFyv_4994 regulator of gluconate operon K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SFyv_4525 DNA-binding transcriptional repressor EbgR K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor D SFyv_2406 MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein C GntR family D SFyv_5458 YidP K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator D SFyv_4896 YhfR K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator D SFyv_0794 FarR K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D SFyv_1755 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D SFyv_0142 transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SFyv_4388 GlcC K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator D SFyv_6093 UxUR K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D SFyv_4558 hypothetical protein K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D SFyv_5267 hypothetical protein K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator D SFyv_5439 DgoR K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor D SFyv_4728 Transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor D SFyv_2584 DNA-binding transcriptional regulator K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator D SFyv_3903 DNA-binding transcriptional regulator CsiR K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D SFyv_2284 hypothetical protein K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor D SFyv_6369 YjjM K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism C TetR/AcrR family D SFyv_1482 Transposon Tn10 tetC protein K19047 tetC; TetR/AcrR family transcriptional regulator, repressor of tetCD D SFyv_0557 HTH-type transcriptional regulator AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D SFyv_5322 Nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D SFyv_1435 pyrimidine utilization regulatory protein R K09017 rutR; TetR/AcrR family transcriptional regulator D SFyv_2452 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D SFyv_2399 HTH-type transcriptional regulator UidR K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D SFyv_6155 hypothetical protein K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D SFyv_1657 YcfQ K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D SFyv_5856 HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D SFyv_1054 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D SFyv_1124 DeoR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D SFyv_5526 hypothetical protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D SFyv_1186 Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SFyv_0533 LRP-like transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D SFyv_2867 Transcriptional regulator of ftsQAZ gene cluster K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D SFyv_2921 RcsA K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor D SFyv_1542 CsgD K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D SFyv_5111 hypothetical protein K21901 dctR; LuxR family transcriptional regulator, dicarboxylate transport regulator D SFyv_6384 BglJ K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides D SFyv_4968 HTH-type transcriptional regulator malT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D SFyv_5117 hypothetical protein K21907 gadE; LuxR family transcriptional regulator, glutamate-dependent acid resistance regulator C MarR family D SFyv_2298 DNA-binding transcriptional repressor MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D SFyv_2439 hypothetical protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D SFyv_3928 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D SFyv_4009 transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility C MerR family D SFyv_3203 HTH-type transcriptional regulator mlrA K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor D SFyv_0585 HTH-type transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D SFyv_5988 hypothetical protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D SFyv_0864 Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D SFyv_6040 Zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D SFyv_5929 transcriptional regulator, IclR family protein K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D SFyv_0604 HTH-type transcriptional repressor allR K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons D SFyv_2060 regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D SFyv_5231 YiaJ K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D SFyv_4872 Catabolite gene aCtivator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SFyv_2693 fumarate/nitrate reduction transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D SFyv_3267 N-ribosylNicotinamide CRP-like regulator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D SFyv_3741 hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D SFyv_6288 hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D SFyv_5099 arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D SFyv_1086 manganese transport regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D SFyv_3602 HTH-type transcriptional regulator MurR K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D SFyv_2731 YebK K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D SFyv_5866 BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D SFyv_4780 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D SFyv_6422 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D SFyv_4687 Sugar fermentation stimulation protein B K07724 ner; Ner family transcriptional regulator D SFyv_0086 HTH-type transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator D SFyv_6419 nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D SFyv_1931 hypothetical protein K14056 puuR; HTH-type transcriptional regulator, repressor for puuD D SFyv_4537 toxin-antitoxin system, antitoxin component, Xre family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D SFyv_3682 formate hydrogenlyase transcriptional activator K12146 hyfR; hydrogenase-4 transcriptional activator D SFyv_3962 YgaA K12266 norR; anaerobic nitric oxide reductase transcription regulator D SFyv_3985 FhlA K15836 fhlA; formate hydrogenlyase transcriptional activator D SFyv_0209 carbohydrate diacid regulator domain protein K02647 cdaR; carbohydrate diacid regulator D SFyv_0210 cdaR transcriptional activator K02647 cdaR; carbohydrate diacid regulator D SFyv_0758 hypothetical protein K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family D SFyv_5047 hypothetical protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D SFyv_5808 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D SFyv_2275 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family D SFyv_5397 BglG K03488 licT; beta-glucoside operon transcriptional antiterminator D SFyv_5742 frv operon regulatory protein K18531 frvR; putative frv operon regulatory protein C Others D SFyv_3131 hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D SFyv_0514 hypothetical protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D SFyv_4037 glycerol-3-phosphate responsive antiterminator family protein K02443 glpP; glycerol uptake operon antiterminator D SFyv_5652 RfaH K05785 rfaH; transcriptional antiterminator RfaH D SFyv_4750 Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D SFyv_0876 hypothetical protein K02565 nagC; N-acetylglucosamine repressor D SFyv_2363 Mlc K15545 mlc; transcriptional regulator of PTS gene D SFyv_5254 MtlR K02562 mtlR; mannitol operon repressor D SFyv_1968 DNA-binding transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D SFyv_3663 Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D SFyv_1936 psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D SFyv_1939 Phage shock protein C K03973 pspC; phage shock protein C D SFyv_2322 YdeW K11531 lsrR; lsr operon transcriptional repressor D SFyv_1795 PTS-dependent dihydroxyacetone kinase operon regulatory protein K05880 dhaR; transcriptional activator for dhaKLM operon D SFyv_0731 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D SFyv_4329 hypothetical protein K07733 alpA; prophage regulatory protein D SFyv_4260 UPF0301 protein YqgE K07735 algH; putative transcriptional regulator D SFyv_0044 transcriptional activator CaiF K08277 caiF; transcriptional activator CaiF D SFyv_0183 DksA K06204 dksA; RNA polymerase-binding transcription factor D SFyv_0473 hypothetical protein K07738 nrdR; transcriptional repressor NrdR D SFyv_0394 sigma factor-binding protein crl K11926 crl; sigma factor-binding protein Crl D SFyv_4973 RtcR K14414 rtcR; transcriptional regulatory protein RtcR D SFyv_1230 DNA-binding transcriptional regulator DicC K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D SFyv_0105 hypothetical protein K03925 mraZ; transcriptional regulator MraZ D SFyv_4453 hypothetical protein K07471 ygiV; probable transcriptional regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0