+D
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Transfer RNA Biogenesis - Shigella flexneri NCTC1 (serotype 2a)
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D NCTC1_02581 elaC_1; ribonuclease Z,Ribonuclease BN,ribonuclease Z,ribonuclease BN,Beta-lactamase superfamily domain K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D NCTC1_03354 cca; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase, Multifunctional CCA protein,multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase,UTP:GlnB (protein PII) uridylyltransferase,CCA tRNA nucleotidyltransferase,Poly A polymerase head domain K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D NCTC1_03724 rtcB_2; RtcB protein,RNA-splicing ligase RtcB,hypothetical protein,release factor H-coupled RctB family protein,Uncharacterized protein family UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D NCTC1_02703 gltX; glutamyl-tRNA synthetase,Glutamate--tRNA ligase,glutamyl-tRNA synthetase,Glutamyl-and glutaminyl-tRNA synthetases,glutamate--tRNA ligase,tRNA synthetases class I (E and Q), catalytic domain K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NCTC1_00191 proS; prolyl-tRNA synthetase,Proline--tRNA ligase,prolyl-tRNA synthetase,Prolyl-tRNA synthetase,proline--tRNA ligase,tRNA synthetase class II core domain (G, H, P, S and T) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NCTC1_00023 ileS; isoleucyl-tRNA synthetase,Isoleucine--tRNA ligase,isoleucyl-tRNA synthetase,Isoleucyl-tRNA synthetase,isoleucine--tRNA ligase,tRNA synthetases class I (I, L, M and V) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NCTC1_00688 leuS; leucyl-tRNA synthetase,Leucine--tRNA ligase,leucyl-tRNA synthetase,Leucyl-tRNA synthetase,leucine--tRNA ligase,tRNA synthetases class I (I, L, M and V) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NCTC1_02394 metG; methionyl-tRNA synthetase,Methionine--tRNA ligase,methionyl-tRNA synthetase,Methionyl-tRNA synthetase,methionine--tRNA ligase,tRNA synthetases class I (M) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NCTC1_00652 glnS; glutaminyl-tRNA synthetase,Glutamine--tRNA ligase,glutaminyl-tRNA synthetase,Glutamyl-and glutaminyl-tRNA synthetases,glutamine--tRNA ligase,tRNA synthetases class I (E and Q), catalytic domain K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NCTC1_02082 argS; arginyl-tRNA synthetase,Arginine--tRNA ligase,arginyl-tRNA synthetase,Arginyl-tRNA synthetase,arginine--tRNA ligase,tRNA synthetases class I (R) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NCTC1_03165 lysS; lysyl-tRNA synthetase,Lysine--tRNA ligase,lysyl-tRNA synthetase,Aspartyl/asparaginyl-tRNA synthetases,lysine--tRNA ligase,tRNA synthetases class II (D, K and N) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NCTC1_02031 aspS; aspartyl-tRNA synthetase,Aspartate--tRNA ligase,aspartyl-tRNA synthetase,Aspartyl/asparaginyl-tRNA synthetases,aspartate--tRNA ligase,tRNA synthetases class II (D, K and N) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D NCTC1_02995 alaS; alanyl-tRNA synthetase,Alanine--tRNA ligase,alanyl-tRNA synthetase,Alanyl-tRNA synthetase,alanine--tRNA ligase,tRNA synthetases class II (A) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NCTC1_00964 asnC_1; asparaginyl-tRNA synthetase,Asparagine--tRNA ligase,asparaginyl-tRNA synthetase,Aspartyl/asparaginyl-tRNA synthetases,asparagine--tRNA ligase,tRNA synthetases class II (D, K and N) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D NCTC1_01631 thrS; threonyl-tRNA synthetase,Threonine--tRNA ligase,threonyl-tRNA synthetase,Prolyl-tRNA synthetase,threonine--tRNA ligase,tRNA synthetase class II core domain (G, H, P, S and T) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NCTC1_00853 serS; seryl-tRNA synthetase,Serine--tRNA ligase,seryl-tRNA synthetase,Prolyl-tRNA synthetase,serine--tRNA ligase,tRNA synthetase class II core domain (G, H, P, S and T) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NCTC1_00471 cysS; cysteinyl-tRNA synthetase,Cysteine--tRNA ligase,cysteinyl-tRNA synthetase,Cysteinyl-tRNA synthetase,cysteine--tRNA ligase,tRNA synthetases class I (C) catalytic domain K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NCTC1_04599 valS; valyl-tRNA synthetase,Valine--tRNA ligase,valyl-tRNA synthetase,Valyl-tRNA synthetase,valine--tRNA ligase,tRNA synthetases class I (I, L, M and V) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NCTC1_02815 hisS; histidyl-tRNA synthetase,Histidine--tRNA ligase,histidyl-tRNA synthetase,Histidyl-tRNA synthetase,histidine--tRNA ligase,tRNA synthetase class II core domain (G, H, P, S and T) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NCTC1_01636 pheS; phenylalanyl-tRNA synthetase subunit alpha,Phenylalanine--tRNA ligase alpha subunit,phenylalanyl-tRNA synthetase subunit alpha,Phenylalanyl-tRNA synthetase alpha subunit,phenylalanine--tRNA ligase, alpha subunit,tRNA synthetases class II core domain (F) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NCTC1_01637 pheT; phenylalanyl-tRNA synthetase subunit beta,Phenylalanine--tRNA ligase beta subunit,phenylalanyl-tRNA synthetase subunit beta,EMAP domain,phenylalanine--tRNA ligase, beta subunit,B3/4 domain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NCTC1_01800 tyrS; tyrosyl-tRNA synthetase,Tyrosine--tRNA ligase,tyrosyl-tRNA synthetase,Tyrosyl-tRNA synthetase,tyrosine--tRNA ligase,tRNA synthetases class I (W and Y) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NCTC1_03683 trpS; tryptophanyl-tRNA synthetase,Tryptophan--tRNA ligase,tryptophanyl-tRNA synthetase,Tryptophanyl-tRNA synthetase,tryptophan--tRNA ligase,tRNA synthetases class I (W and Y) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D NCTC1_04285 dtd; D-tyrosyl-tRNA(Tyr) deacylase,D-tyrosyl-tRNA(Tyr) deacylase,D-tyrosyl-tRNA(Tyr) deacylase,D-Tyr-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D NCTC1_01161 hinT; purine nucleoside phosphoramidase,HIT-like protein hinT,purine nucleoside phosphoramidase,HIT domain K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D NCTC1_03248 trmB; tRNA (guanine-N(7)-)-methyltransferase,tRNA (guanine-N(7)-)-methyltransferase,tRNA (guanine-N(7)-)-methyltransferase,Putative methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D NCTC1_00192 yaeB; protein yaeB,hypothetical protein,putative methyltransferase, YaeB/AF_0241 family,Uncharacterised protein family UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D NCTC1_02629 truA; tRNA pseudouridine synthase A,tRNA pseudouridine synthase A,tRNA pseudouridine synthase A,tRNA pseudouridine(38-40) synthase,tRNA pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D NCTC1_03479 truB; tRNA pseudouridine synthase B,tRNA pseudouridine synthase B,tRNA pseudouridine synthase B,Pseudouridine synthase,tRNA pseudouridine(55) synthase,TruB family pseudouridylate synthase (N terminal domain) K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D NCTC1_03046 truD; tRNA pseudouridine synthase D,tRNA pseudouridine synthase D,tRNA pseudouridine synthase D,tRNA pseudouridine synthase, TruD family,tRNA pseudouridine synthase D (TruD) K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D NCTC1_02832 yfhO; cysteine desulfurase,Cysteine desulfurase,cysteine desulfurase,Uncharacterized protein conserved in bacteria,cysteine desulfurase IscS,Aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D NCTC1_03594 rimN; putative ribosome maturation factor,t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN,tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein,Putative translation factor (SUA5),Sua5/YciO/YrdC/YwlC family protein,yrdC domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NCTC1_04701 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase,tRNA dimethylallyltransferase,tRNA delta(2)-isopentenylpyrophosphate transferase,tRNA dimethylallyltransferase,IPP transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NCTC1_04052 trmE; tRNA modification GTPase TrmE,tRNA modification GTPase MnmE,tRNA modification GTPase TrmE,Predicted GTPase,tRNA modification GTPase TrmE,GTP-binding protein TrmE N-terminus K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D NCTC1_04125 gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA,Glucose-inhibited division protein A,tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,Proteins involved in synaptic transmission and general secretion, Sec1 family,tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NCTC1_01569 selD; selenophosphate synthetase,Selenide, water dikinase,selenophosphate synthetase,Hydrogenase maturation factor,selenide, water dikinase,AIR synthase related protein, C-terminal domain K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D NCTC1_04641 cysQ; adenosine-3'(2'),5'-bisphosphate nucleotidase,3'(2'),5'-bisphosphate nucleotidase CysQ,adenosine-3'(2'),5'-bisphosphate nucleotidase,3'(2'),5'-bisphosphate nucleotidase,Inositol monophosphatase family K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D NCTC1_04054 rnpA; ribonuclease P,Ribonuclease P protein component,ribonuclease P,ribonuclease P protein component,Ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D NCTC1_02581 elaC_1; ribonuclease Z,Ribonuclease BN,ribonuclease Z,ribonuclease BN,Beta-lactamase superfamily domain K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D NCTC1_01819 rnt; ribonuclease T,Ribonuclease T,ribonuclease T,ribonuclease T,Exonuclease K03683 rnt; ribonuclease T [EC:3.1.13.-]
D NCTC1_03977 rph; ribonuclease PH,Ribonuclease PH,ribonuclease PH,Xanthosine triphosphate pyrophosphatase,ribonuclease PH,3' exoribonuclease family, domain 1 K00989 rph; ribonuclease PH [EC:2.7.7.56]
D NCTC1_00555 rna; RNase I,Ribonuclease I precursor,ribonuclease I,Ribonuclease I,Ribonuclease T2 family K01169 rna; ribonuclease I (enterobacter ribonuclease) [EC:4.6.1.21]
D NCTC1_01366 rnb; exoribonuclease II,Exoribonuclease 2,exoribonuclease II,Exoribonuclease II,exoribonuclease II,RNB domain K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D NCTC1_01525 rnd; ribonuclease D,Ribonuclease D,ribonuclease D,Ribonuclease D,ribonuclease D,3'-5' exonuclease K03684 rnd; ribonuclease D [EC:3.1.13.5]
C CCA adding factors
D NCTC1_03354 cca; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase, Multifunctional CCA protein,multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase,UTP:GlnB (protein PII) uridylyltransferase,CCA tRNA nucleotidyltransferase,Poly A polymerase head domain K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D NCTC1_03724 rtcB_2; RtcB protein,RNA-splicing ligase RtcB,hypothetical protein,release factor H-coupled RctB family protein,Uncharacterized protein family UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D NCTC1_00142 ligT; 2'-5' RNA ligase,2'-5'-RNA ligase,2'-5' RNA ligase,2'-5' RNA ligase,2',5' RNA ligase family K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D NCTC1_04554 kptA; RNA 2'-phosphotransferase-like protein,RNA 2'-phosphotransferase,RNA 2'-phosphotransferase, Tpt1 / KptA family K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
D NCTC1_04804 yjjK; putative ABC transporter ATP-binding protein,Uncharacterized ABC transporter ATP-binding protein YjjK,putative ABC transporter ATP-binding protein,ATP-dependent transcriptional regulator,ATP-binding cassette protein, ChvD family,ABC transporter K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D NCTC1_00688 leuS; leucyl-tRNA synthetase,Leucine--tRNA ligase,leucyl-tRNA synthetase,Leucyl-tRNA synthetase,leucine--tRNA ligase,tRNA synthetases class I (I, L, M and V) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NCTC1_00191 proS; prolyl-tRNA synthetase,Proline--tRNA ligase,prolyl-tRNA synthetase,Prolyl-tRNA synthetase,proline--tRNA ligase,tRNA synthetase class II core domain (G, H, P, S and T) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D NCTC1_01800 tyrS; tyrosyl-tRNA synthetase,Tyrosine--tRNA ligase,tyrosyl-tRNA synthetase,Tyrosyl-tRNA synthetase,tyrosine--tRNA ligase,tRNA synthetases class I (W and Y) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NCTC1_03683 trpS; tryptophanyl-tRNA synthetase,Tryptophan--tRNA ligase,tryptophanyl-tRNA synthetase,Tryptophanyl-tRNA synthetase,tryptophan--tRNA ligase,tRNA synthetases class I (W and Y) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NCTC1_01631 thrS; threonyl-tRNA synthetase,Threonine--tRNA ligase,threonyl-tRNA synthetase,Prolyl-tRNA synthetase,threonine--tRNA ligase,tRNA synthetase class II core domain (G, H, P, S and T) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NCTC1_00023 ileS; isoleucyl-tRNA synthetase,Isoleucine--tRNA ligase,isoleucyl-tRNA synthetase,Isoleucyl-tRNA synthetase,isoleucine--tRNA ligase,tRNA synthetases class I (I, L, M and V) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NCTC1_03165 lysS; lysyl-tRNA synthetase,Lysine--tRNA ligase,lysyl-tRNA synthetase,Aspartyl/asparaginyl-tRNA synthetases,lysine--tRNA ligase,tRNA synthetases class II (D, K and N) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NCTC1_02995 alaS; alanyl-tRNA synthetase,Alanine--tRNA ligase,alanyl-tRNA synthetase,Alanyl-tRNA synthetase,alanine--tRNA ligase,tRNA synthetases class II (A) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NCTC1_04599 valS; valyl-tRNA synthetase,Valine--tRNA ligase,valyl-tRNA synthetase,Valyl-tRNA synthetase,valine--tRNA ligase,tRNA synthetases class I (I, L, M and V) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NCTC1_02394 metG; methionyl-tRNA synthetase,Methionine--tRNA ligase,methionyl-tRNA synthetase,Methionyl-tRNA synthetase,methionine--tRNA ligase,tRNA synthetases class I (M) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NCTC1_00853 serS; seryl-tRNA synthetase,Serine--tRNA ligase,seryl-tRNA synthetase,Prolyl-tRNA synthetase,serine--tRNA ligase,tRNA synthetase class II core domain (G, H, P, S and T) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NCTC1_02031 aspS; aspartyl-tRNA synthetase,Aspartate--tRNA ligase,aspartyl-tRNA synthetase,Aspartyl/asparaginyl-tRNA synthetases,aspartate--tRNA ligase,tRNA synthetases class II (D, K and N) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NCTC1_03896 glyQ; glycyl-tRNA synthetase subunit alpha,Glycine--tRNA ligase alpha subunit,glycyl-tRNA synthetase subunit alpha,glycine--tRNA ligase, alpha subunit,Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NCTC1_03895 glyS; glycyl-tRNA synthetase subunit beta,Glycine--tRNA ligase beta subunit,glycyl-tRNA synthetase subunit beta,glycine--tRNA ligase, beta subunit,Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NCTC1_00471 cysS; cysteinyl-tRNA synthetase,Cysteine--tRNA ligase,cysteinyl-tRNA synthetase,Cysteinyl-tRNA synthetase,cysteine--tRNA ligase,tRNA synthetases class I (C) catalytic domain K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NCTC1_02703 gltX; glutamyl-tRNA synthetase,Glutamate--tRNA ligase,glutamyl-tRNA synthetase,Glutamyl-and glutaminyl-tRNA synthetases,glutamate--tRNA ligase,tRNA synthetases class I (E and Q), catalytic domain K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NCTC1_00652 glnS; glutaminyl-tRNA synthetase,Glutamine--tRNA ligase,glutaminyl-tRNA synthetase,Glutamyl-and glutaminyl-tRNA synthetases,glutamine--tRNA ligase,tRNA synthetases class I (E and Q), catalytic domain K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NCTC1_02082 argS; arginyl-tRNA synthetase,Arginine--tRNA ligase,arginyl-tRNA synthetase,Arginyl-tRNA synthetase,arginine--tRNA ligase,tRNA synthetases class I (R) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NCTC1_01636 pheS; phenylalanyl-tRNA synthetase subunit alpha,Phenylalanine--tRNA ligase alpha subunit,phenylalanyl-tRNA synthetase subunit alpha,Phenylalanyl-tRNA synthetase alpha subunit,phenylalanine--tRNA ligase, alpha subunit,tRNA synthetases class II core domain (F) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NCTC1_01637 pheT; phenylalanyl-tRNA synthetase subunit beta,Phenylalanine--tRNA ligase beta subunit,phenylalanyl-tRNA synthetase subunit beta,EMAP domain,phenylalanine--tRNA ligase, beta subunit,B3/4 domain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NCTC1_02815 hisS; histidyl-tRNA synthetase,Histidine--tRNA ligase,histidyl-tRNA synthetase,Histidyl-tRNA synthetase,histidine--tRNA ligase,tRNA synthetase class II core domain (G, H, P, S and T) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NCTC1_00964 asnC_1; asparaginyl-tRNA synthetase,Asparagine--tRNA ligase,asparaginyl-tRNA synthetase,Aspartyl/asparaginyl-tRNA synthetases,asparagine--tRNA ligase,tRNA synthetases class II (D, K and N) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D NCTC1_00139 gluQ; glutamyl-Q tRNA(Asp) synthetase,Glutamyl-Q tRNA(Asp) synthetase,glutamyl-Q tRNA(Asp) synthetase,Glutamyl-and glutaminyl-tRNA synthetases,glutamyl-queuosine tRNA(Asp) synthetase,tRNA synthetases class I (E and Q), catalytic domain K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D NCTC1_04285 dtd; D-tyrosyl-tRNA(Tyr) deacylase,D-tyrosyl-tRNA(Tyr) deacylase,D-tyrosyl-tRNA(Tyr) deacylase,D-Tyr-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D NCTC1_00440 ybaK; Protein YbaK / prolyl-tRNA synthetases associated domain protein,Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK,hypothetical protein,Uncharacterized conserved protein,YbaK/EbsC protein,YbaK / prolyl-tRNA synthetases associated domain K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D NCTC1_01538 YbaK/prolyl-tRNA synthetase-associated domain-containing protein,Uncharacterized conserved protein,YbaK/EbsC protein,YbaK / prolyl-tRNA synthetases associated domain K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D NCTC1_02867 tadA; tRNA-specific adenosine deaminase,tRNA-specific adenosine deaminase,tRNA-specific adenosine deaminase,Pyrimidine deaminase,riboflavin biosynthesis protein RibD,Cytidine and deoxycytidylate deaminase zinc-binding region K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D NCTC1_04519 dusA; tRNA-dihydrouridine synthase A,Probable tRNA-dihydrouridine synthase,tRNA-dihydrouridine synthase A,tRNA-dihydrouridine synthase,tRNA dihydrouridine synthase A,Dihydrouridine synthase (Dus) K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D NCTC1_03575 dusB; tRNA-dihydrouridine synthase B,Probable tRNA-dihydrouridine synthase,tRNA-dihydrouridine synthase B,Predicted permeases,putative TIM-barrel protein, nifR3 family,Dihydrouridine synthase (Dus) K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D NCTC1_02445 dusC; tRNA-dihydrouridine synthase C,Probable tRNA-dihydrouridine synthase,tRNA-dihydrouridine synthase C,tRNA-dihydrouridine synthase,putative TIM-barrel protein, nifR3 family,Dihydrouridine synthase (Dus) K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
C Methylthiotransferases
D NCTC1_00669 miaB; (dimethylallyl)adenosine tRNA methylthiotransferase,(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB,(dimethylallyl)adenosine tRNA methylthiotransferase,tRNA-i(6)A37 thiotransferase enzyme MiaB,Radical SAM superfamily K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D NCTC1_02076 cmoA; putative methyltransferase,tRNA (cmo5U34)-methyltransferase,tRNA cmo(5)U34 methyltransferase,Trans-aconitate methyltransferase,tRNA (cmo5U34)-methyltransferase,Methyltransferase domain K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D NCTC1_02077 cmoB; putative methyltransferase,tRNA (mo5U34)-methyltransferase,tRNA mo(5)U34 methyltransferase,tRNA (mo5U34)-methyltransferase,Protein of unknown function (DUF1698) K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D NCTC1_00954 smtA; putative metallothionein SmtA,hypothetical protein,putative S-adenosyl-L-methionine-dependent methyltransferase,Trans-aconitate methyltransferase,3-demethylubiquinone-9 3-O-methyltransferase,Methyltransferase domain K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D NCTC1_04815 putative RNA methyltransferase,Uncharacterized tRNA/rRNA methyltransferase HI_0380,putative RNA methyltransferase,RNA methyltransferase, TrmH family, group 1,SpoU rRNA Methylase family K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D NCTC1_04383 trmA; tRNA (uracil-5-)-methyltransferase,tRNA (uracil(54)-C(5))-methyltransferase,tRNA (uracil-5-)-methyltransferase,Predicted O-methyltransferase,tRNA (uracil-5-)-methyltransferase,tRNA (Uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D NCTC1_03248 trmB; tRNA (guanine-N(7)-)-methyltransferase,tRNA (guanine-N(7)-)-methyltransferase,tRNA (guanine-N(7)-)-methyltransferase,Putative methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D NCTC1_02933 trmD; tRNA (guanine-N(1)-)-methyltransferase,tRNA (guanine-N(1)-)-methyltransferase,tRNA (guanine-N(1)-)-methyltransferase, tRNA-(guanine-N1)-methyltransferase,tRNA (guanine(37)-N(1))-methyltransferase,tRNA (Guanine-1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D NCTC1_04052 trmE; tRNA modification GTPase TrmE,tRNA modification GTPase MnmE,tRNA modification GTPase TrmE,Predicted GTPase,tRNA modification GTPase TrmE,GTP-binding protein TrmE N-terminus K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D NCTC1_02905 rlmB_1; putative methyltransferase,23S rRNA (guanosine-2'-O-)-methyltransferase RlmB,putative methyltransferase,RNA methyltransferase, TrmH family, group 3,SpoU rRNA Methylase family K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D NCTC1_03985 trmH; tRNA guanosine-2'-O-methyltransferase,tRNA (guanosine(18)-2'-O)-methyltransferase,tRNA guanosine-2'-O-methyltransferase,RNA methyltransferase, TrmH family, group 3,SpoU rRNA Methylase family K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D NCTC1_02835 trmJ; RNA methyltransferase, TrmH family, group 1,tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ,tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ,RNA methyltransferase, TrmH family, group 1,SpoU rRNA Methylase family K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D NCTC1_03941 trmL; putative tRNA/rRNA methyltransferase YibK,tRNA (cytidine(34)-2'-O)-methyltransferase,putative rRNA methylase,tRNA (cytidine(34)-2'-O)-methyltransferase,SpoU rRNA Methylase family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D NCTC1_00192 yaeB; protein yaeB,hypothetical protein,putative methyltransferase, YaeB/AF_0241 family,Uncharacterised protein family UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D NCTC1_02899 yfiC; enzyme,tRNA1(Val) (adenine(37)-N6)-methyltransferase,N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase,Predicted O-methyltransferase,protein-(glutamine-N5) methyltransferase, release factor-specific,Methyltransferase small domain K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
C Psudouridine synthases
D NCTC1_02629 truA; tRNA pseudouridine synthase A,tRNA pseudouridine synthase A,tRNA pseudouridine synthase A,tRNA pseudouridine(38-40) synthase,tRNA pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D NCTC1_03479 truB; tRNA pseudouridine synthase B,tRNA pseudouridine synthase B,tRNA pseudouridine synthase B,Pseudouridine synthase,tRNA pseudouridine(55) synthase,TruB family pseudouridylate synthase (N terminal domain) K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D NCTC1_03083 truC; tRNA pseudouridine synthase C,tRNA pseudouridine synthase C,tRNA pseudouridine synthase C,pseudouridine synthase, RluA family,RNA pseudouridylate synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D NCTC1_03046 truD; tRNA pseudouridine synthase D,tRNA pseudouridine synthase D,tRNA pseudouridine synthase D,tRNA pseudouridine synthase, TruD family,tRNA pseudouridine synthase D (TruD) K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D NCTC1_00053 rluA; Ribosomal large subunit pseudouridine synthase A,Ribosomal large subunit pseudouridine synthase A,23S rRNA/tRNA pseudouridine synthase A,pseudouridine synthase, RluA family,RNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D NCTC1_01210 mnmA; putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain,tRNA-specific 2-thiouridylase mnmA,tRNA-specific 2-thiouridylase MnmA,Predicted ATPase of the PP-loop superfamily implicated in cell cycle control,tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, tRNA methyl transferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D NCTC1_01963 ttcA; C32 tRNA thiolase,tRNA 2-thiocytidine biosynthesis protein TtcA,tRNA 2-thiocytidine biosynthesis protein TtcA,Predicted ATPase of the PP-loop superfamily implicated in cell cycle control,tRNA(Ile)-lysidine synthetase,PP-loop family K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D NCTC1_03769 tusA; sulfur transfer protein SirA,Sulfurtransferase TusA,sulfur transfer protein SirA,Uncharacterized conserved protein,selenium metabolism protein YedF,SirA-like protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NCTC1_03641 dsrH; sulfur transfer complex subunit TusB,tRNA 2-thiouridine synthesizing protein B,sulfur transfer complex subunit TusB,Uncharacterized conserved protein involved in oxidation of intracellular sulfur,sulfur relay protein TusB/DsrH,DsrH like protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D NCTC1_03642 tusC; sulfur relay protein TusC,tRNA 2-thiouridine synthesizing protein C,sulfur relay protein TusC,Uncharacterized protein involved in the oxidation of intracellular sulfur,sulfur relay protein TusC/DsrF,DsrE/DsrF-like family K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D NCTC1_03643 tusD; sulfur transfer complex subunit TusD,Sulfurtransferase TusD,sulfur transfer complex subunit TusD,Uncharacterized conserved protein involved in intracellular sulfur reduction,sulfur relay protein TusD/DsrE,DsrE/DsrF-like family K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D NCTC1_01008 yccK; Sulfurtransferase tusE,Sulfurtransferase TusE,sulfur transfer protein TusE,sulfur relay protein, TusE/DsrC/DsvC family,DsrC like protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D NCTC1_02830 iscA; iron-sulfur cluster assembly protein,Iron-sulfur cluster assembly protein,iron-sulfur cluster assembly protein,iron-sulfur cluster assembly protein IscA,Iron-sulphur cluster biosynthesis K13628 iscA; iron-sulfur cluster assembly protein
D NCTC1_02832 yfhO; cysteine desulfurase,Cysteine desulfurase,cysteine desulfurase,Uncharacterized protein conserved in bacteria,cysteine desulfurase IscS,Aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NCTC1_03173 ygfZ; putative global regulator,tRNA-modifying protein ygfZ,putative global regulator,Glycine cleavage system T protein (aminomethyltransferase),folate-binding protein YgfZ,Aminomethyltransferase folate-binding domain K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D NCTC1_04125 gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA,Glucose-inhibited division protein A,tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,Proteins involved in synaptic transmission and general secretion, Sec1 family,tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NCTC1_04701 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase,tRNA dimethylallyltransferase,tRNA delta(2)-isopentenylpyrophosphate transferase,tRNA dimethylallyltransferase,IPP transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NCTC1_02635 mnmC; peptidase,tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC,bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase,Uncharacterized conserved protein,tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain,Protein of unknown function (DUF752) K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D NCTC1_00352 queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase,S-adenosylmethionine:tRNA ribosyltransferase-isomerase, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase),S-adenosylmethionine:tRNA ribosyltransferase-isomerase,Queuosine biosynthesis protein K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D NCTC1_00401 queC; queuosine biosynthesis protein QueC,7-cyano-7-deazaguanine synthase,queuosine biosynthesis protein QueC,ATP-utilizing enzymes of the PP-loop superfamily,queuosine biosynthesis protein QueC,ExsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D NCTC1_03060 sscR; putative 6-pyruvoyl tetrahydrobiopterin synthase,6-carboxy-5,6,7,8-tetrahydropterin synthase,6-pyruvoyl tetrahydropterin synthase/QueD family protein,6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NCTC1_03070 queE; 7-carboxy-7-deazaguanine synthase,Predicted membrane protein,7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE,Radical SAM superfamily K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NCTC1_03087 queF; 7-cyano-7-deazaguanine reductase,NADPH-dependent 7-cyano-7-deazaguanine reductase,7-cyano-7-deazaguanine reductase,Uncharacterized protein conserved in bacteria,queuine synthase,GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D NCTC1_04696 yjeS; putative electron transport protein yjeS,Epoxyqueuosine reductase,Methylated DNA-protein cysteine methyltransferase,putative iron-sulfur cluster-binding protein,Domain of unknown function (DUF1730) K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D NCTC1_00875 hypothetical protein,Uncharacterized BCR, COG1636 K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D NCTC1_01569 selD; selenophosphate synthetase,Selenide, water dikinase,selenophosphate synthetase,Hydrogenase maturation factor,selenide, water dikinase,AIR synthase related protein, C-terminal domain K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D NCTC1_00456 selU; tRNA 2-selenouridine synthase,tRNA 2-selenouridine synthase,tRNA 2-selenouridine synthase,Predicted ATPase,tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D NCTC1_00353 tgt; queuine tRNA-ribosyltransferase,Queuine tRNA-ribosyltransferase,queuine tRNA-ribosyltransferase,Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D NCTC1_00370 thiI; thiamine biosynthesis protein ThiI,tRNA sulfurtransferase,tRNA s(4)U8 sulfurtransferase,tRNA sulfurtransferase ThiI,Thiamine biosynthesis protein (ThiI) K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D NCTC1_00184 tilS; tRNA(Ile)-lysidine synthetase,tRNA(Ile)-lysidine synthase,tRNA(Ile)-lysidine synthetase,Predicted ATPase of the PP-loop superfamily implicated in cell cycle control,tRNA(Ile)-lysidine synthetase,PP-loop family K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D NCTC1_02767 ypfI; putative P-loop ATPase fused to an acetyltransferase,tRNA(Met) cytidine acetyltransferase TmcA,Putative ATPase (DUF699) K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D NCTC1_01522 yeaZ; glycoprotease family protein,hypothetical protein,UGMP family protein,universal bacterial protein YeaZ,Glycoprotease family K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D NCTC1_03594 rimN; putative ribosome maturation factor,t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN,tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein,Putative translation factor (SUA5),Sua5/YciO/YrdC/YwlC family protein,yrdC domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NCTC1_03362 gcp; putative DNA-binding/iron metalloprotein/AP endonuclease,t(6)A37 threonylcarbamoyladenosine biosynthesis protein,UGMP family protein,Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA),putative glycoprotease GCP,Glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D NCTC1_04698 putative ATPase,hypothetical protein,ADP-binding protein,ATPase, YjeE family,Uncharacterised P-loop hydrolase UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D NCTC1_03109 thiF_1; ThiF family protein,Sulfur carrier protein ThiS adenylyltransferase,sulfur acceptor protein CsdL,thiazole biosynthesis adenylyltransferase ThiF,ThiF family K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C NCTC1_04709 rnr; exoribonuclease R,Ribonuclease R,exoribonuclease R,Exoribonuclease II,VacB and RNase II family 3'-5' exoribonucleases,RNB domain K12573 rnr; ribonuclease R [EC:3.1.13.1]
C NCTC1_03476 pnp; polynucleotide phosphorylase/polyadenylase,Polyribonucleotide nucleotidyltransferase,polynucleotide phosphorylase/polyadenylase,Lipoprotein NlpI, contains TPR repeats,polyribonucleotide nucleotidyltransferase,3' exoribonuclease family, domain 1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024