+F Chromosome and associated proteins KO #

  Chromosome and Associated Proteins - Shigella flexneri NCTC1 (serotype 2a)

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AEukaryotic type B Sister chromatid cohesion proteins C Cohesin complex C Adherin complex C CTF18-RFC complex C Fork protection complex C Other sister chromatid cohesion factors B Meiosis-specific proteins C Cohesin complex and associated proteins C Synaptonemal complex C DSB formation-related proteins C Others B Nucleosome assembly factors C Histones C Histone chaperones D Nucleoplasmins D NAPs (Nucleosome assembly proteins) D CAF-1 D FACT complex D Other Histone chaperones and regulators C HMG (high mobility group) proteins B Histone modification proteins C HATs (histone acetyltransferases) C HAT complexes D PCAF complex D STAGA complex D TFTC complex D TIP60 complex D HBO1 complex D MOZ/MORF complex D SAGA complex D SLIK complex D ADA-HAT complex D HAT-A2 complex D ATAC complex D HATB complex D NSL complex D MSL complex D NuA3 complex D NuA4 complex D SAS complex C HDACs (histone deacetylases) D Class I HDACs D Class II HDACs D SIRTs (sirtuins, class III HDACs) D Class IV HDACs C HDAC complexes D Sin3A-HDAC complex D BRAF-HDAC complex D REST complex D SHIP complex D MiDAC complex D SMART complex D Other HDAC associated proteins C HMTs (histone methyltransferases) D HKMTs (histone lysine methyltransferases) D PRMTs (protein arginine metyltransferases) C HMT complexes D COMPASS/SET1 complex D COMPASS/SET1 complex (yeast) D MLL-HCF complex D MLL3/MLL4 complex D Dot1-containing complex C Histone demethylases C Polycomb repressive complex (PRC) and associated proteins D Canonical PRC1 (PRC1.2/1.4) E PRC1.4 specific proteins D Noncanonical PRC1 (PRC1.1) D Noncanonical PRC1 (PRC1.3/1.5) D Noncanonical PRC1 (PRC1.6) D PRC2.1 D PRC2.2 D PR-DUB complex D Other PRC associated proteins C Sir proteins C Other histone modification proteins B Chromosome condensation proteins C Condensin I C Condensin II C Other regulators of chromosome condensation B Centromeric chromatin formation proteins C Kinetochore proteins D Centromere proteins D CPC (chromosomal passenger complex) D KMN network proteins E MIS12 complex E NDC80 complex D Mis6 complex D COMA complex D NMS complex E NDC80 complex E MIND kinetochore complex D MIS16-MIS18 complex D DASH complex D CBF3 complex D Others C SAC (spindle assembly checkpoint) factors D Core SAC proteins D Motor proteins E RZZ complex E Dynein complex D Protein kinases D Others C Other centromeric chromatin formation proteins D Shugoshin D PP2A (protein phosphatase 2A) B Heterochromatin formation proteins C HP1 (heterochromatin protein 1) C MBPs (metylated DNA binding proteins) C Other heterochromatin formation proteins D NCTC1_02182 dcm; DNA cytosine methylase,DNA-cytosine methyltransferase,DNA cytosine methylase,DNA (cytosine-5-)-methyltransferase,C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] B Gene silencing C RISC (RNA-induced silencing complex) C piRNA pathway C RNA interference (RNAi) pathway D RITS (RNA-induced transcriptional silencing) complex D RDRC (RNA-directed RNA polymerase complex) D Other RNAi proteins C microRNA pathway D Microprocessor complex D RISC loading complex D Other miRNA pathway proteins C Transposable elements B Centrosome formation proteins C Centriole proteins C Pericentriolar materials (PCM) D Centriolar satellite D Other PCM proteins C Cyclins C Kinases and associated factors D Kinase anchoring protein C Microtubules and associated factors D gamma-tubulin ring complex D Other tubulins D Dynactin complex D BRISC complex D Microtubule-associated proteins C Augmin complex C Centrosome duplication proteins D Centriole replication proteins D Regulators of centriole replication D Other centrosome duplication proteins C Nde1-Su48 complex C LINC complex C 3M complex C Gypsy chromatin insulator complex C Other centrosome associated proteins C Spindle formation proteins B Sister chromatid separation proteins C Securin and associated proteins C Separase C APC/C complex C Aurora kinases D Regulators of Aurora kinases C TACC proteins C Polo kinases C Early mitotic inhibitors B Chromatin remodeling factors C BAF complex C PBAF complex C GBAF(ncBAF) complex C CHRAC complex C RSF complex C WICH complex C B-WICH complex C NORC complex C BRF complex C NuRD complex C NuRF complex C NuRF complex (fruit fly) C CERF complex C SRCAP complex C INO80 complex C INO80 complex (yeast) C RSC complex C SWI/SNF complex C SWR1 complex C ASTRA complex C Other chromatin remodeling factors # AProkaryotic type B Nucleoid associated proteins C HNS (histone-like nucleoid structuring protein) D NCTC1_01307 hns; global DNA-binding transcriptional dual regulator H-NS,Pathogenesis protein kcpA,global DNA-binding transcriptional dual regulator H-NS,H-NS histone family K03746 hns; DNA-binding protein H-NS D NCTC1_02966 stpA; DNA binding protein,H-NS homolog stpA,DNA binding protein, nucleoid-associated,H-NS histone family K11685 stpA; DNA-binding protein StpA C HU (heat unstable protein) D NCTC1_04419 hupA; transcriptional regulator HU subunit alpha,NS2,transcriptional regulator HU subunit alpha,integration host factor, beta subunit,Bacterial DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha D NCTC1_00397 hupB; transcriptional regulator HU subunit beta,NS1,transcriptional regulator HU subunit beta,integration host factor, beta subunit,Bacterial DNA-binding protein K03530 hupB; DNA-binding protein HU-beta C IHF (integration host factor) D NCTC1_00943 ihfB; integration host factor subunit beta,Integration host factor subunit beta,integration host factor subunit beta,integration host factor, beta subunit,Bacterial DNA-binding protein K05788 ihfB; integration host factor subunit beta C Other nucleoid associated proteins D NCTC1_01042 cbpA; curved DNA-binding protein CbpA,Curved DNA-binding protein,curved DNA-binding protein CbpA,Preprotein translocase subunit Sec63,chaperone protein DnaJ,DnaJ C terminal domain K05516 cbpA; curved DNA-binding protein D NCTC1_01041 cbpM; chaperone-modulator protein CbpM,Chaperone modulatory protein CbpM,chaperone-modulator protein CbpM K18997 cbpM; chaperone modulatory protein CbpM D NCTC1_04809 rob; right origin-binding protein,Right origin-binding protein,right oriC-binding transcriptional activator,DNA gyrase inhibitor,YSIRK-targeted surface antigen transcriptional regulator,Helix-turn-helix domain K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D NCTC1_04056 dnaA; chromosomal replication initiation protein,Chromosomal replication initiator protein DnaA,chromosomal replication initiation protein,DNA replication protein,chromosomal replication initiator protein DnaA,Bacterial dnaA protein K02313 dnaA; chromosomal replication initiator protein D NCTC1_03461 diaA; DnaA initiator-associating protein DiaA,DnaA initiator-associating protein diaA,DnaA initiator-associating protein DiaA,phosphoheptose isomerase,SIS domain K12961 diaA; DnaA initiator-associating protein D NCTC1_01005 yccV; heat shock protein HspQ,Heat shock protein hspQ,heat shock protein HspQ,hemimethylated DNA binding domain,Hemimethylated DNA-binding protein YccV like K11940 hspQ; heat shock protein HspQ D NCTC1_00772 dps; Global regulator, starvation conditions,DNA protection during starvation protein,DNA starvation/stationary phase protection protein Dps,Ferritin-like domain K04047 dps; starvation-inducible DNA-binding protein D NCTC1_03576 fis; DNA-binding protein Fis,Hin recombinational enhancer-binding protein,global DNA-binding transcriptional dual regulator Fis,Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains,nitrogen regulation protein NR(I),Bacterial regulatory protein, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D NCTC1_04702 hfq; RNA-binding protein Hfq,Host factor-I protein,RNA-binding protein Hfq,RNA chaperone Hfq,LSM domain K03666 hfq; host factor-I protein D NCTC1_03192 argP; Chromosome initiation inhibitor,OriC replication inhibitor,chromosome replication initiation inhibitor protein,transcriptional regulator, ArgP family,Bacterial regulatory helix-turn-helix protein, lysR family K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D NCTC1_00849 lrp; leucine-responsive transcriptional regulator,Leucine-responsive regulatory protein,leucine-responsive transcriptional regulator,AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D NCTC1_02497 ndpA; nucleoid-associated protein NdpA,Nucleoid-associated protein YejK,nucleoid-associated protein NdpA,37-kD nucleoid-associated bacterial protein K06899 ndpA; nucleoid-associated protein B Chromosome partitioning proteins C MukBEF complex D NCTC1_00957 mukB; cell division protein MukB,Structural maintenance of chromosome-related protein,cell division protein MukB,Uncharacterized protein involved in chromosome partitioning,MukB N-terminal K03632 mukB; chromosome partition protein MukB D NCTC1_00956 mukE; Chromosome partition protein mukE,hypothetical protein,condesin subunit E,Uncharacterized protein involved in chromosome partitioning,MukE-like family K03804 mukE; chromosome partition protein MukE D NCTC1_00955 mukF; condesin subunit F,hypothetical protein,condesin subunit F,KicB killing factor K03633 mukF; chromosome partition protein MukF C Condensin-like complex C Divisome proteins D NCTC1_00092 ftsA; cell division protein FtsA,Cell division protein FtsA,cell division protein FtsA,Ethanolamine utilization protein, possible chaperonin,cell division protein FtsA,Cell division protein FtsA K03590 ftsA; cell division protein FtsA D NCTC1_03049 ftsB; cell division protein FtsB,Cell division protein FtsB,cell division protein FtsB,Septum formation initiator K05589 ftsB; cell division protein FtsB D NCTC1_03762 ftsE; cell division protein FtsE,Cell division ATP-binding protein FtsE,cell division protein FtsE,ABC-type spermidine/putrescine transport systems, ATPase components,cell division ATP-binding protein FtsE,ABC transporter K09812 ftsE; cell division transport system ATP-binding protein D NCTC1_00082 ftsI; peptidoglycan synthetase FtsI,Peptidoglycan synthase FtsI precursor,peptidoglycan synthase FtsI,Membrane carboxypeptidase/penicillin-binding protein,stage V sporulation protein D,Penicillin binding protein transpeptidase domain K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D NCTC1_00850 ftsK; putative DNA segregation ATPase FtsK/SpoIIIE-like protein,DNA translocase FtsK,DNA translocase FtsK,DNA segregation ATPase FtsK/SpoIIIE and related proteins,type VII secretion protein EssC,FtsK/SpoIIIE family K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D NCTC1_00081 ftsL; cell division protein FtsL,Cell division protein FtsL,cell division protein FtsL,Cell division protein,cell division protein FtsL,Cell division protein FtsL K03586 ftsL; cell division protein FtsL D NCTC1_04341 ftsN; essential cell division protein FtsN,Cell division protein FtsN,essential cell division protein FtsN,Uncharacterized protein conserved in bacteria,cell division protein FtsN,Sporulation related domain K03591 ftsN; cell division protein FtsN D NCTC1_00091 ftsQ; cell division protein FtsQ,Cell division protein FtsQ,cell division protein FtsQ,Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D NCTC1_00087 ftsW; cell division protein FtsW,Cell division protein FtsW,cell division protein FtsW,cell division protein FtsW,Cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28] D NCTC1_03761 ftsX; cell division protein FtsX,Cell division protein FtsX,cell division ABC transporter subunit FtsX,putative protein insertion permease FtsX,FtsX-like permease family K09811 ftsX; cell division transport system permease protein D NCTC1_00093 ftsZ; cell division protein FtsZ,Cell division protein FtsZ,cell division protein FtsZ,Cell division GTPase,cell division protein FtsZ,FtsZ family, C-terminal domain K03531 ftsZ; cell division protein FtsZ D NCTC1_02712 zipA; Cell division protein zipA,Cell division protein ZipA,cell division protein ZipA,cell division protein ZipA,ZipA, C-terminal FtsZ-binding domain K03528 zipA; cell division protein ZipA D NCTC1_03185 zapA; Z-ring-associated protein,Z ring-associated protein ZapA,Z-ring-associated protein,Uncharacterized protein conserved in bacteria,Cell division protein ZapA K09888 zapA; cell division protein ZapA D NCTC1_04336 yiiU; septal ring assembly protein ZapB,Cell division protein ZapB,septal ring assembly protein ZapB,Uncharacterized protein conserved in bacteria,Protein of unknown function (DUF904) K09892 zapB; cell division protein ZapB D NCTC1_00983 zapC; Z-ring-associated protein C,Protein of unknown function (DUF1379) K18657 zapC; cell division protein ZapC D NCTC1_00099 yacF; protein yacF,hypothetical protein,hypothetical protein,Protein of unknown function (DUF1342) K18778 zapD; cell division protein ZapD D NCTC1_03547 yhcM; ATPase,hypothetical protein,AFG1-like ATPase K06916 zapE; cell division protein ZapE D NCTC1_04649 opacity-associated family protein,Opacity-associated protein A LysM-like domain K07269 ytfB; cell division protein YtfB D NCTC1_02735 amiA; N-acetylmuramoyl-l-alanine amidase I,N-acetylmuramoyl-L-alanine amidase AmiA precursor,N-acetylmuramoyl-l-alanine amidase I,N-acetylmuramoyl-L-alanine amidase CwlD,N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D NCTC1_03113 amiC; amidase,N-acetylmuramoyl-L-alanine amidase AmiC precursor,N-acetylmuramoyl-l-alanine amidase I,N-acetylmuramoyl-L-alanine amidase CwlD,N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D NCTC1_04699 amiB; N-acetylmuramoyl-l-alanine amidase II,N-acetylmuramoyl-L-alanine amidase AmiB precursor,N-acetylmuramoyl-l-alanine amidase II,N-acetylmuramoyl-L-alanine amidase CwlD,N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D NCTC1_00422 acrA; acriflavine resistance protein A,Acriflavine resistance protein A precursor,multidrug efflux system transporter AcrA,efflux transporter, RND family, MFP subunit,HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system C Inhibitors of FtsZ assembly D NCTC1_01225 minC; septum formation inhibitor,Septum site-determining protein MinC,septum formation inhibitor,septum site-determining protein MinC,Septum formation inhibitor MinC, C-terminal domain K03610 minC; septum site-determining protein MinC D NCTC1_01224 minD_1; cell division inhibitor MinD,Cell division inhibitor MinD,cell division inhibitor MinD,Septum formation inhibitor-activating ATPase,septum site-determining protein MinD,CobQ/CobB/MinD/ParA nucleotide binding domain K03609 minD; septum site-determining protein MinD D NCTC1_01223 minE; cell division topological specificity factor MinE,Cell division topological specificity factor,cell division topological specificity factor MinE,cell division topological specificity factor MinE,Septum formation topological specificity factor MinE K03608 minE; cell division topological specificity factor D NCTC1_00995 sulA; SOS cell division inhibitor,Cell division inhibitor SulA,SOS cell division inhibitor,SOS-response cell division inhibitor, blocks FtsZ ring formation,cell division inhibitor SulA,Cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA D NCTC1_03975 ttk; transcriptional regulator,Synthetically lethal with a defective Min system protein A,division inhibitor protein,Bacterial regulatory proteins, tetR family K05501 slmA; TetR/AcrR family transcriptional regulator C Other chromosome partitioning proteins D NCTC1_00645 seqA; Negative modulator of initiation of replication,Negative modulator of initiation of replication,replication initiation regulator SeqA,Negative regulator of replication initiationR,SeqA protein K03645 seqA; negative modulator of initiation of replication D NCTC1_03566 mreB; Rod shape-determining protein mreB,Rod shape-determining protein MreB,rod shape-determining protein MreB,Ethanolamine utilization protein, possible chaperonin,cell shape determining protein, MreB/Mrl family,MreB/Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins D NCTC1_03565 mreC; rod shape-determining protein MreC,rod shape-determining protein MreC,rod shape-determining protein MreC,rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D NCTC1_03564 lytS; rod shape-determining protein MreD,Rod shape-determining protein mreD,rod shape-determining protein MreD,rod shape-determining protein MreD,rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D NCTC1_00696 mrdB; cell wall shape-determining protein,Rod shape-determining protein RodA,cell wall shape-determining protein,rod shape-determining protein RodA,Cell cycle protein K05837 rodA; peptidoglycan glycosyltransferase [EC:2.4.99.28] D NCTC1_03316 parC; DNA topoisomerase IV subunit A,DNA topoisomerase 4 subunit A,DNA topoisomerase IV subunit A,Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit,DNA topoisomerase IV, A subunit,DNA gyrase/topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D NCTC1_03326 parE; DNA topoisomerase IV subunit B,DNA topoisomerase 4 subunit B,DNA topoisomerase IV subunit B,DNA topoisomerase IV, B subunit,DNA gyrase B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D NCTC1_04125 gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA,Glucose-inhibited division protein A,tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,Proteins involved in synaptic transmission and general secretion, Sec1 family,tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D NCTC1_04124 gidB; 16S rRNA methyltransferase GidB,Ribosomal RNA small subunit methyltransferase G,16S rRNA methyltransferase GidB,16S rRNA (guanine(527)-N(7))-methyltransferase GidB,rRNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D NCTC1_04205 xerC; site-specific tyrosine recombinase XerC,Tyrosine recombinase XerC,site-specific tyrosine recombinase XerC,Site-specific recombinase XerC,tyrosine recombinase XerC,Phage integrase family K03733 xerC; integrase/recombinase XerC D NCTC1_03169 xerD; site-specific tyrosine recombinase XerD,Tyrosine recombinase XerD,site-specific tyrosine recombinase XerD,Site-specific recombinase XerD,tyrosine recombinase XerD,Phage integrase family K04763 xerD; integrase/recombinase XerD D NCTC1_02393 minD_2; putative ATPase,Cell division inhibitor MinD,antiporter inner membrane protein,Septum formation inhibitor-activating ATPase,cell division ATPase MinD,ParA/MinD ATPase like K03593 mrp; ATP-binding protein involved in chromosome partitioning D NCTC1_03660 fic; cell filamentation protein Fic,Probable adenosine monophosphate-protein transferase fic,cell filamentation protein Fic,Protein involved in cell division,Fic/DOC family K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D NCTC1_04258 engB; ribosome biogenesis GTP-binding protein YsxC,Probable GTP-binding protein EngB,GTP-binding protein YsxC,Predicted GTPase,ribosome biogenesis GTP-binding protein YsxC,GTPase of unknown function K03978 engB; GTP-binding protein ! #
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#Last updated: April 9, 2025