+E Ribosome biogenesis KO
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Ribosome Biogenesis - Spiroplasma floricola
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SFLOR_v1c08910 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SFLOR_v1c07810 era; GTP-binding protein Era K03595 era; GTPase
C SFLOR_v1c03560 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SFLOR_v1c03970 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C SFLOR_v1c05900 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
C SFLOR_v1c00350 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SFLOR_v1c11260 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SFLOR_v1c09070 sunL; RNA-binding Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SFLOR_v1c09090 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SFLOR_v1c04030 rsmE; 16S ribosomal RNA methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SFLOR_v1c11130 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SFLOR_v1c08310 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SFLOR_v1c02800 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SFLOR_v1c05990 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D SFLOR_v1c00310 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SFLOR_v1c03340 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SFLOR_v1c09050 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SFLOR_v1c05990 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SFLOR_v1c03080 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SFLOR_v1c01090 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D SFLOR_v1c08120 rluD; ribosomal large subunit pseudouridylate synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C SFLOR_v1c03510 rimM; 16S rRNA processing protein rimM K02860 rimM; 16S rRNA processing protein RimM
B rRNA processing factors
C SFLOR_v1c08910 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SFLOR_v1c02350 ruvX; Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C SFLOR_v1c04170 cshB; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C SFLOR_v1c07810 era; GTP-binding protein Era K03595 era; GTPase
C SFLOR_v1c09010 engC; ribosome biogenesis GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SFLOR_v1c03210 engA; GTP-binding protein EngA K03977 engA; GTPase
C SFLOR_v1c03560 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
C SFLOR_v1c03350 rbgA; ribosomal biogenesis GTPase K14540 rbgA; ribosome biogenesis GTPase A
C SFLOR_v1c04960 yqeH; 30S ribosome assembly GTPase K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C SFLOR_v1c09310 tsaC; L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SFLOR_v1c04330 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SFLOR_v1c04010 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SFLOR_v1c07920 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C SFLOR_v1c07890 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C SFLOR_v1c11090 engD; GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024