+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sodalis glossinidius

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SG0868 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SG1797 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SG2035 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SG1449 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SG0458 mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SG2210 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SG0868 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SG1797 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SG2035 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SG1137 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SG2206 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SG1449 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SG1363 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E SG0139 endonuclease V (deoxyinosine 3'endoduclease) K05982 nfi; deoxyribonuclease V [EC:3.1.21.7] D RecJ E SG1991 single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SG1678 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SG2235 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SG2129 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SG0907 excision nuclease subunit B K03702 uvrB; excinuclease ABC subunit B E SG1171 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SG2342 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SG2235 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SG1678 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SG0134 RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SG0135 RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SG2253 RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SG2222 RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SG1075 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SG0531 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SG0335 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E SG1981 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E SG1132 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E SG1750 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SG0658 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SG1928 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SG0002 DNA polymerase III beta subunit protein DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SG2110 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SG0801 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SG1066 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SG0592 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SG0689 DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E SG0390 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E SG1274 DNA polymerase III theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E SG1678 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SG2342 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SG0733 hypothetical protein K03111 ssb; single-strand DNA-binding protein E SG2128 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E SGP2_0002 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SG0472 putative DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SG0828 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SG1012 putative phage DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SG1208 putative DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SG1566 putative phage DNA modification methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SG1889 putative DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SG2306 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SG1973 exodeoxyribonuclease V beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E SG1975 exodeoxyribonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E SG1972 exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SG0537 DNA recombinase A RecA K03553 recA; recombination protein RecA E SG1261 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SG1262 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SG1260 crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SG0745 putative phage endonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E SG1182 hypothetical phage protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E SG1692 phage holiday-junction resolvase K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E SG2166 primosomal protein N' factor K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SG0346 primosomal replication protein N K02686 priB; primosomal replication protein N E SG0687 primosomal replication protein N K04067 priC; primosomal replication protein N'' E SG1211 conserved hypothetical protein K02317 dnaT; DNA replication protein DnaT E SG1132 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E SG0537 DNA recombinase A RecA K03553 recA; recombination protein RecA E SG0399 putative ATP-dependent protease K04485 radA; DNA repair protein RadA/Sms E SG0003 DNA metabolism protein RecF K03629 recF; DNA replication and repair protein RecF E SG2224 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SG1991 single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SG1785 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SG0691 recombination protein RecR K06187 recR; recombination protein RecR E SG1800 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SG0637 recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC E SG1261 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SG1262 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SG1260 crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E SG1571 putative ATP-dependent helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SG1582 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SG0004 DNA gyrase subunit B GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SG1408 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SG0141 DNA-binding protein HU-alpha (HU-2) K05787 hupA; DNA-binding protein HU-alpha F SG0674 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta F SGP2_0003 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SG1175 phage recombinase K07455 recT; recombination protein RecT F SG1991 single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SG1785 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SG0691 recombination protein RecR K06187 recR; recombination protein RecR F SG1678 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SG0150 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F SG1424 integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F SG0994 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F SG1132 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F SG2337 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SG2129 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SG0907 excision nuclease subunit B K03702 uvrB; excinuclease ABC subunit B F SG1370 histone-like protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SG1846 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D SG0537 DNA recombinase A RecA K03553 recA; recombination protein RecA D SG2141 lexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D SG1800 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SG0733 hypothetical protein K03111 ssb; single-strand DNA-binding protein D SG2128 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D SGP2_0002 single stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SG1050 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SG2390 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D SG1031 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D SG0916 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SG0458 mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SG2210 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SG1584 ribonucleoside-diphosphate reductase 1 alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SG1585 ribonucleoside-diphosphate reductase 1 beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 5, 2025