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Transcription Machinery - Strigops habroptila (Kakapo)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E 115603026 POLR2A; DNA-directed RNA polymerase II subunit RPB1 isoform X1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E 115610776 POLR2B; LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E 115601186 POLR2C; DNA-directed RNA polymerase II subunit RPB3 isoform X1 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E 115601831 DNA-directed RNA polymerase II subunit RPB11-a K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E 115612083 POLR2D; DNA-directed RNA polymerase II subunit RPB4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E 115603508 POLR2G; DNA-directed RNA polymerase II subunit RPB7 isoform X1 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 115603251 POLR2I; DNA-directed RNA polymerase II subunit RPB9 isoform X1 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E 115618027 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 115604983 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 115611956 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 115615783 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 115606575 POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E 115606180 GTF2A1; transcription initiation factor IIA subunit 1 isoform X1 K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 115613569 GTF2A1L; TFIIA-alpha and beta-like factor K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E 115612819 GTF2A2; transcription initiation factor IIA subunit 2 K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E 115611911 GTF2B; transcription initiation factor IIB isoform X1 K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E 115607434 TBPL2; TATA box-binding protein-like protein 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 115613981 TBP; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 115609523 TBPL1; TATA box-binding protein-like protein 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 115603071 TAF1; transcription initiation factor TFIID subunit 1 isoform X1 K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E 115605511 TAF2; transcription initiation factor TFIID subunit 2 isoform X1 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 115605554 TAF3; transcription initiation factor TFIID subunit 3 isoform X1 K14650 TAF3; transcription initiation factor TFIID subunit 3
E 115601377 transcription initiation factor TFIID subunit 4-like isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 115619242 transcription initiation factor TFIID subunit 4-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 115615237 TAF4; transcription initiation factor TFIID subunit 4 isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 115603665 TAF4B; transcription initiation factor TFIID subunit 4B K03129 TAF4; transcription initiation factor TFIID subunit 4
E 115613466 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 115608711 TAF5; transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 115614577 TAF6L; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X1 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 115603039 TAF6; transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 115612605 TAF7L; transcription initiation factor TFIID subunit 7-like K03132 TAF7; transcription initiation factor TFIID subunit 7
E 115602478 TAF8; transcription initiation factor TFIID subunit 8 isoform X1 K14649 TAF8; transcription initiation factor TFIID subunit 8
E 115612457 TAF9B; transcription initiation factor TFIID subunit 9B K14535 TAF9; transcription initiation factor TFIID subunit 9
E 115604483 TAF10; transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 115602233 TAF11; transcription initiation factor TFIID subunit 11 K03135 TAF11; transcription initiation factor TFIID subunit 11
E 115615763 TAF12; transcription initiation factor TFIID subunit 12 isoform X1 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 115603978 TAF13; transcription initiation factor TFIID subunit 13 isoform X1 K03127 TAF13; transcription initiation factor TFIID subunit 13
E 115601862 TAF15; TATA-binding protein-associated factor 2N isoform X1 K14651 TAF15; transcription initiation factor TFIID subunit 15
D TFIIE
E 115610338 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 115601458 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFIIF
E 115604488 GTF2F2; general transcription factor IIF subunit 2 isoform X1 K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E 115606863 GTF2H1; general transcription factor IIH subunit 1 isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 115600701 general transcription factor IIH subunit 2 isoform X1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 115614945 GTF2H3; general transcription factor IIH subunit 3 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 115618853 GTF2H4; general transcription factor IIH subunit 4 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 115607961 ERCC3; general transcription and DNA repair factor IIH helicase subunit XPB isoform X1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 115613459 GTF2H5; general transcription factor IIH subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 115619505 CDK7; cyclin-dependent kinase 7 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 115607394 MNAT1; CDK-activating kinase assembly factor MAT1 isoform X1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E 115600676 CCNH; cyclin-H isoform X1 K06634 CCNH; cyclin H
C Mediator complex
D Head
E 115606659 MED6; mediator of RNA polymerase II transcription subunit 6 K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E 115611397 MED8; mediator of RNA polymerase II transcription subunit 8 isoform X1 K15129 MED8; mediator of RNA polymerase II transcription subunit 8
E 115601752 MED17; mediator of RNA polymerase II transcription subunit 17 K15133 MED17; mediator of RNA polymerase II transcription subunit 17
E 115601200 MED18; mediator of RNA polymerase II transcription subunit 18 K15135 MED18; mediator of RNA polymerase II transcription subunit 18
E 115607114 MED19; mediator of RNA polymerase II transcription subunit 19 K15137 MED19; mediator of RNA polymerase II transcription subunit 19
E 115602481 MED20; mediator of RNA polymerase II transcription subunit 20 isoform X1 K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E 115617124 MED22; mediator of RNA polymerase II transcription subunit 22 K15139 MED22; mediator of RNA polymerase II transcription subunit 22
E 115610986 MED28; mediator of RNA polymerase II transcription subunit 28 K15141 MED28; mediator of RNA polymerase II transcription subunit 28
E 115614871 MED30; mediator of RNA polymerase II transcription subunit 30 K15143 MED30; mediator of RNA polymerase II transcription subunit 30
D Middle
E 115617620 MED1; mediator of RNA polymerase II transcription subunit 1 K15144 MED1; mediator of RNA polymerase II transcription subunit 1
E 115603982 MED4; mediator of RNA polymerase II transcription subunit 4 K15146 MED4; mediator of RNA polymerase II transcription subunit 4
E 115615900 MED7; mediator of RNA polymerase II transcription subunit 7 K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E 115607049 MED9; mediator of RNA polymerase II transcription subunit 9 K15149 MED9; mediator of RNA polymerase II transcription subunit 9
E 115610035 MED10; mediator of RNA polymerase II transcription subunit 10 isoform X1 K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E 115605952 MED21; mediator of RNA polymerase II transcription subunit 21 K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E 115602148 MED31; mediator of RNA polymerase II transcription subunit 31 isoform X1 K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E 115604204 MED14; mediator of RNA polymerase II transcription subunit 14 K15156 MED14; mediator of RNA polymerase II transcription subunit 14
E 115614473 MED15; mediator of RNA polymerase II transcription subunit 15 isoform X1 K15157 MED15; mediator of RNA polymerase II transcription subunit 15
E 115618313 MED16; mediator of RNA polymerase II transcription subunit 16 K15159 MED16; mediator of RNA polymerase II transcription subunit 16
D CDK-module
E 115603769 CDK8; cyclin-dependent kinase 8 isoform X1 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 115609994 CDK19; cyclin-dependent kinase 19 isoform X1 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E 115609527 CCNC; cyclin-C isoform X1 K15161 CCNC; cyclin-C
E 115611720 MED12L; mediator of RNA polymerase II transcription subunit 12-like protein isoform X1 K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 115603087 MED12; mediator of RNA polymerase II transcription subunit 12 isoform X1 K15162 MED12; mediator of RNA polymerase II transcription subunit 12
E 115602094 MED13; mediator of RNA polymerase II transcription subunit 13 K15164 MED13; mediator of RNA polymerase II transcription subunit 13
E 115614730 MED13L; mediator of RNA polymerase II transcription subunit 13-like isoform X1 K15164 MED13; mediator of RNA polymerase II transcription subunit 13
D Other mediators
E 115609387 MED23; mediator of RNA polymerase II transcription subunit 23 isoform X1 K15166 MED23; mediator of RNA polymerase II transcription subunit 23
E 115617632 MED24; mediator of RNA polymerase II transcription subunit 24 isoform X1 K15167 MED24; mediator of RNA polymerase II transcription subunit 24
E 115618334 MED26; mediator of RNA polymerase II transcription subunit 26 isoform X1 K15169 MED26; mediator of RNA polymerase II transcription subunit 26
E 115616926 MED27; mediator of RNA polymerase II transcription subunit 27 isoform X1 K15170 MED27; mediator of RNA polymerase II transcription subunit 27
C Coactivators
D SAGA/TFTC/STAGA complex
E 115617590 KAT2A; histone acetyltransferase KAT2A K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 115606239 KAT2B; histone acetyltransferase KAT2B isoform X1 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E 115606576 TRRAP; transformation/transcription domain-associated protein isoform X1 K08874 TRRAP; transformation/transcription domain-associated protein
E 115609241 SUPT3H; transcription initiation protein SPT3 homolog isoform X1 K11313 SUPT3H; transcription initiation protein SPT3
E 115601781 TADA2A; transcriptional adapter 2-alpha K11314 TADA2A; transcriptional adapter 2-alpha
E 115610485 TADA2B; transcriptional adapter 2-beta K15127 TADA2B; transcriptional adapter 2-beta
E 115614912 TADA3; transcriptional adapter 3 K11315 TADA3; transcriptional adapter 3
E 115611216 TADA1; transcriptional adapter 1 isoform X1 K11317 TADA1; transcriptional adapter 1
E 115605511 TAF2; transcription initiation factor TFIID subunit 2 isoform X1 K03128 TAF2; transcription initiation factor TFIID subunit 2
E 115601377 transcription initiation factor TFIID subunit 4-like isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 115619242 transcription initiation factor TFIID subunit 4-like K03129 TAF4; transcription initiation factor TFIID subunit 4
E 115615237 TAF4; transcription initiation factor TFIID subunit 4 isoform X1 K03129 TAF4; transcription initiation factor TFIID subunit 4
E 115603665 TAF4B; transcription initiation factor TFIID subunit 4B K03129 TAF4; transcription initiation factor TFIID subunit 4
E 115613466 TAF5L; TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 115608711 TAF5; transcription initiation factor TFIID subunit 5 K03130 TAF5; transcription initiation factor TFIID subunit 5
E 115614577 TAF6L; TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L isoform X1 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 115603039 TAF6; transcription initiation factor TFIID subunit 6 K03131 TAF6; transcription initiation factor TFIID subunit 6
E 115612605 TAF7L; transcription initiation factor TFIID subunit 7-like K03132 TAF7; transcription initiation factor TFIID subunit 7
E 115612457 TAF9B; transcription initiation factor TFIID subunit 9B K14535 TAF9; transcription initiation factor TFIID subunit 9
E 115604483 TAF10; transcription initiation factor TFIID subunit 10 K03134 TAF10; transcription initiation factor TFIID subunit 10
E 115615763 TAF12; transcription initiation factor TFIID subunit 12 isoform X1 K03126 TAF12; transcription initiation factor TFIID subunit 12
E 115617788 ATXN7L3; ataxin-7-like protein 3 K11363 SGF11; SAGA-associated factor 11
E 115613694 SUPT7L; STAGA complex 65 subunit gamma K11316 SUPT7L; STAGA complex 65 subunit gamma
E 115604745 ATXN7L1; ataxin-7-like protein 1 isoform X1 K11318 ATXN7; ataxin-7
E 115602185 ATXN7L2; LOW QUALITY PROTEIN: ataxin-7-like protein 2 K11318 ATXN7; ataxin-7
E 115614782 ATXN7; ataxin-7 isoform X1 K11318 ATXN7; ataxin-7
E 115619472 CHD1; chromodomain-helicase-DNA-binding protein 1 isoform X1 K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E 115601761 chromodomain-helicase-DNA-binding protein 1-like K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E 115604374 ENY2; transcription and mRNA export factor ENY2 isoform X1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 115607615 ubiquitin carboxyl-terminal hydrolase 22-A isoform X1 K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E 115619584 SF3B3; splicing factor 3B subunit 3 K12830 SF3B3; splicing factor 3B subunit 3
E 115602973 splicing factor 3B subunit 3 K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E 115601396 SMARCA2; probable global transcription activator SNF2L2 isoform X1 K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 115603575 LOW QUALITY PROTEIN: transcription activator BRG1-like K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E 115614056 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E 115610856 SMARCC1; SWI/SNF complex subunit SMARCC1 isoform X1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 115618699 SMARCC2; SWI/SNF complex subunit SMARCC2 isoform X1 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E 115617816 SMARCD2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 115618800 SMARCD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 115610220 SMARCD3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E 115617671 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
E 115616751 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 115612443 actin, cytoplasmic type 5 K05692 ACTB_G1; actin beta/gamma 1
E 115606888 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 115611176 ACTL6A; actin-like protein 6A isoform X1 K11340 ACTL6A; actin-like protein 6A
E 115603032 ACTL6B; actin-like protein 6B K11652 ACTL6B; actin-like protein 6B
E 115616197 ARID1A; AT-rich interactive domain-containing protein 1A isoform X1 K11653 ARID1; AT-rich interactive domain-containing protein 1
E 115613878 ARID1B; AT-rich interactive domain-containing protein 1B isoform X1 K11653 ARID1; AT-rich interactive domain-containing protein 1
E 115605462 ARID2; AT-rich interactive domain-containing protein 2 K11765 ARID2; AT-rich interactive domain-containing protein 2
E 115614800 PBRM1; protein polybromo-1 isoform X1 K11757 PBRM1; protein polybromo-1
D SWI/SNF complex
E 115614056 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
D RSC complex
D Others
E 115618302 activated RNA polymerase II transcriptional coactivator p15-like K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 115619148 activated RNA polymerase II transcriptional coactivator p15-like K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 115619362 SUB1; activated RNA polymerase II transcriptional coactivator p15 K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
E 115608170 CCAR1; cell division cycle and apoptosis regulator protein 1 isoform X1 K25827 CCAR1; cell division cycle and apoptosis regulator protein 1
C Other transcription-related factors
D Transcription elongation factors
E 115605103 TCEA1; transcription elongation factor A protein 1 isoform X1 K03145 TFIIS; transcription elongation factor S-II
E 115615094 TCEA2; transcription elongation factor A protein 2 isoform X1 K03145 TFIIS; transcription elongation factor S-II
E 115615755 TCEA3; transcription elongation factor A protein 3 K03145 TFIIS; transcription elongation factor S-II
E 115603139 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 115601944 SUPT6H; transcription elongation factor SPT6 K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E 115603625 TTF2; transcription termination factor 2 isoform X1 K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-]
E 115604279 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 115602959 CPSF1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 115609396 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 115616839 CPSF4L; putative cleavage and polyadenylation specificity factor subunit 4-like protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 115606810 CPSF4; cleavage and polyadenylation specificity factor subunit 4 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 115607027 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 115613414 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 115614242 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 115603219 SYMPK; symplekin K06100 SYMPK; symplekin
E 115617339 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 115609427 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 115602999 RPRD1A; regulation of nuclear pre-mRNA domain-containing protein 1A isoform X1 K15559 RTT103; regulator of Ty1 transposition protein 103
E 115615430 RPRD1B; regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1 K15559 RTT103; regulator of Ty1 transposition protein 103
E 115615787 SFPQ; splicing factor, proline- and glutamine-rich isoform X1 K13219 SFPQ; splicing factor, proline- and glutamine-rich
E 115613889 SCAF8; SR-related and CTD-associated factor 8 isoform X1 K13191 RBM16; RNA-binding protein 16
E 115604376 SCAF4; SR-related and CTD-associated factor 4 isoform X1 K13167 SCAF4; SR-related and CTD-associated factor 4
E 115617042 SETX; probable helicase senataxin isoform X1 K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E 115603409 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E 115611838 CDC73; parafibromin isoform X1 K15175 CDC73; parafibromin
E 115606643 CTR9; RNA polymerase-associated protein CTR9 homolog K15176 CTR9; RNA polymerase-associated protein CTR9
E 115612532 LEO1; RNA polymerase-associated protein LEO1 isoform X1 K15177 LEO1; RNA polymerase-associated protein LEO1
E 115606161 RTF1; RNA polymerase-associated protein RTF1 homolog isoform X1 K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
E 115610808 NELFA; negative elongation factor A K15179 WHSC2; negative elongation factor A
E 115617111 NELFB; negative elongation factor B K15180 COBRA1; negative elongation factor B
E 115615074 NELFCD; negative elongation factor C/D K15181 TH1L; negative elongation factor C/D
E 115618848 NELFE; negative elongation factor E K15182 RDBP; negative elongation factor E
D Super elongation complex (SEC)
E 115618184 ELL; RNA polymerase II elongation factor ELL isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 115600891 ELL2; RNA polymerase II elongation factor ELL2 isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 115610870 AFF1; AF4/FMR2 family member 1 K15184 AFF1; AF4/FMR2 family member 1
E 115615850 AFF4; AF4/FMR2 family member 4 isoform X1 K15185 AFF4; AF4/FMR2 family member 4
E 115618508 EAF1; ELL-associated factor 1 K15186 EAF; ELL-associated factor
E 115608737 EAF2; ELL-associated factor 2 K15186 EAF; ELL-associated factor
E 115618146 MLLT1; protein ENL isoform X1 K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 115619354 MLLT3; protein AF-9 isoform X1 K15187 MLLT1_3; YEATS domain-containing protein 1/3
E 115618664 CCNT1; cyclin-T1 isoform X1 K15188 CCNT; cyclin T
E 115608099 CCNT2; cyclin-T2 isoform X1 K15188 CCNT; cyclin T
E 115617216 CDK9; cyclin-dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D Little elongation complex (LEC)
E 115618184 ELL; RNA polymerase II elongation factor ELL isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 115600891 ELL2; RNA polymerase II elongation factor ELL2 isoform X1 K15183 ELL; RNA polymerase II elongation factor ELL
E 115609835 ICE1; little elongation complex subunit 1 isoform X1 K26143 ICE1; little elongation complex subunit 1
E 115613148 ICE2; LOW QUALITY PROTEIN: little elongation complex subunit 2 K26144 ICE2; little elongation complex subunit 2
D Brd4/P-TEFb complex
E 115603431 BRD4; bromodomain-containing protein 4 isoform X1 K11722 BRD4; bromodomain-containing protein 4
E 115618664 CCNT1; cyclin-T1 isoform X1 K15188 CCNT; cyclin T
E 115608099 CCNT2; cyclin-T2 isoform X1 K15188 CCNT; cyclin T
E 115617216 CDK9; cyclin-dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
E 115617762 HEXIM1; protein HEXIM1 K15189 HEXIM1_2; protein HEXIM1/2
E 115603031 MEPCE; 7SK snRNA methylphosphate capping enzyme isoform X1 K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
E 115605488 LARP7; la-related protein 7 K15191 LARP7; La-related protein 7
E 115618664 CCNT1; cyclin-T1 isoform X1 K15188 CCNT; cyclin T
E 115608099 CCNT2; cyclin-T2 isoform X1 K15188 CCNT; cyclin T
E 115617216 CDK9; cyclin-dependent kinase 9 K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23]
D DBIRD complex
E 115611222 ZNF326; DBIRD complex subunit ZNF326 isoform X1 K13204 ZNF326; zinc finger protein 326
D Others
E 115601850 GTF2I; general transcription factor II-I isoform X1 K03121 TFII-I; transcription initiation factor TFII-I
E 115602065 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 isoform X1 K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1
E 115607941 BTAF1; TATA-binding protein-associated factor 172 isoform X1 K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E 115612244 DR1; protein Dr1 K21751 DR1; down-regulator of transcription 1
E 115603491 DRAP1; dr1-associated corepressor K21752 DRAP1; Dr1-associated corepressor
E 115606851 SPTY2D1; protein SPT2 homolog isoform X1 K15193 SPTY2D1; protein SPT2
E 115613284 AFF2; AF4/FMR2 family member 2 isoform X1 K15194 AFF2; AF4/FMR2 family member 2
E 115603714 AFF3; AF4/FMR2 family member 3 isoform X1 K15195 AFF3; AF4/FMR2 family member 3
E 115617559 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase isoform X1 K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E 115618200 CTDSPL; CTD small phosphatase-like protein isoform X1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 115608937 CTDSP1; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E 115612091 IWS1; protein IWS1 homolog isoform X1 K17498 SPN1; transcription factor SPN1
E 115612142 CSRNP1; cysteine/serine-rich nuclear protein 1 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 115618752 CSRNP2; cysteine/serine-rich nuclear protein 2 isoform X1 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 115609099 CSRNP3; cysteine/serine-rich nuclear protein 3 isoform X1 K17494 CSRNP; cysteine/serine-rich nuclear protein
E 115606649 RPAP1; RNA polymerase II-associated protein 1 isoform X1 K20826 RPAP1; RNA polymerase II-associated protein 1
E 115611700 RPAP2; putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E 115605142 RPAP3; RNA polymerase II-associated protein 3 K23002 RPAP3; RNA polymerase II-associated protein 3
E 115606569 CCNK; cyclin-K K23326 CCNK; cyclin K
E 115614152 GPN3; GPN-loop GTPase 3 isoform X1 K24104 GPN; GPN-loop GTPase
E 115609930 GPN1; GPN-loop GTPase 1 isoform X1 K24104 GPN; GPN-loop GTPase
E 115615920 GPN2; GPN-loop GTPase 2 isoform X1 K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E 115608395 POLR3A; DNA-directed RNA polymerase III subunit RPC1 isoform X1 K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E 115604896 POLR3B; LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC2 K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E 115613937 POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 115612644 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
E 115613109 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
E 115613107 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E 115618551 POLR3D; DNA-directed RNA polymerase III subunit RPC4 isoform X1 K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E 115606655 POLR3E; DNA-directed RNA polymerase III subunit RPC5 isoform X1 K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E 115619396 POLR3G; DNA-directed RNA polymerase III subunit RPC7 isoform X1 K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E 115602692 POLR3GL; DNA-directed RNA polymerase III subunit RPC7-like K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E 115605028 POLR3H; DNA-directed RNA polymerase III subunit RPC8 K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E 115602112 CRCP; DNA-directed RNA polymerase III subunit RPC9 isoform X1 K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E 115606475 POLR3K; DNA-directed RNA polymerase III subunit RPC10 K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E 115618027 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 115604983 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 115611956 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 115615783 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 115606575 POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E 115604112 GTF3A; transcription factor IIIA K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E 115607434 TBPL2; TATA box-binding protein-like protein 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 115613981 TBP; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 115609523 TBPL1; TATA box-binding protein-like protein 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 115607557 BRF1; transcription factor IIIB 90 kDa subunit isoform X1 K15196 BRF1; transcription factor IIIB 90 kDa subunit
E 115618413 BRF2; transcription factor IIIB 50 kDa subunit K15197 BRF2; transcription factor IIIB 50 kDa subunit
E 115600704 BDP1; transcription factor TFIIIB component B'' homolog isoform X1 K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E 115606462 GTF3C1; general transcription factor 3C polypeptide 1 isoform X1 K15199 GTF3C1; general transcription factor 3C polypeptide 1
E 115609299 GTF3C2; general transcription factor 3C polypeptide 2 isoform X1 K15200 GTF3C2; general transcription factor 3C polypeptide 2
E 115608021 GTF3C3; general transcription factor 3C polypeptide 3 isoform X1 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E 115616935 GTF3C4; general transcription factor 3C polypeptide 4 isoform X1 K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48]
E 115617117 GTF3C5; general transcription factor 3C polypeptide 5 isoform X1 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 115609310 GTF3C6; general transcription factor 3C polypeptide 6 isoform X1 K15203 GTF3C6; general transcription factor 3C polypeptide 6
D TFIIIC, fungi type
E 115617117 GTF3C5; general transcription factor 3C polypeptide 5 isoform X1 K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E 115608021 GTF3C3; general transcription factor 3C polypeptide 3 isoform X1 K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E 115606074 SNAPC1; snRNA-activating protein complex subunit 1 K15208 SNAPC1; snRNA-activating protein complex subunit 1
E 115601230 SNAPC3; snRNA-activating protein complex subunit 3 K15210 SNAPC3; snRNA-activating protein complex subunit 3
E 115616984 SNAPC4; snRNA-activating protein complex subunit 4 K09453 SNAPC4; snRNA-activating protein complex subunit 4
E 115612650 SNAPC5; snRNA-activating protein complex subunit 5 K15211 SNAPC5; snRNA-activating protein complex subunit 5
D Octamer transcription factors
E 115616291 POU2F3; POU domain, class 2, transcription factor 3 K09364 POU2F; POU domain transcription factor, class 2
E 115601578 POU2F1; POU domain, class 2, transcription factor 1 isoform X1 K09364 POU2F; POU domain transcription factor, class 2
E 115616901 POU domain, class 5, transcription factor 3 isoform X1 K09367 POU5F; POU domain transcription factor, class 5
D Others
E 115606374 ZNF143; zinc finger protein 143 isoform X1 K20828 ZNF143_76; zinc finger protein 143/76
E 115602225 ZNF76; zinc finger protein 76 K20828 ZNF143_76; zinc finger protein 143/76
E 115608416 MAF1; repressor of RNA polymerase III transcription MAF1 homolog K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E 115610410 POLR1A; DNA-directed RNA polymerase I subunit RPA1 K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E 115613656 POLR1B; DNA-directed RNA polymerase I subunit RPA2 isoform X1 K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E 115613937 POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E 115612644 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
E 115613109 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
E 115613107 DNA-directed RNA polymerases I and III subunit RPAC2-like K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E 115601138 POLR1E; DNA-directed RNA polymerase I subunit RPA49 K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E 115606650 TWISTNB; DNA-directed RNA polymerase I subunit RPA43 K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
D Pol I, II, III common subunits
E 115618027 POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E 115604983 POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E 115611956 POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E 115615783 POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E 115606575 POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E 115607434 TBPL2; TATA box-binding protein-like protein 2 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 115613981 TBP; TATA-box-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 115609523 TBPL1; TATA box-binding protein-like protein 1 K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E 115614018 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A
E 115609403 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1 K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B
E 115602971 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C
E 115601788 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D
C Other transcription-related factors
D UBF
E 115617785 UBTF; nucleolar transcription factor 1 isoform X1 K09273 UBTF; upstream-binding transcription factor
D Transcription initiation factors
E 115607237 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
D Transcription elongation factors
E 115603139 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
D NoRC (nucleolar remodeling complex)
E 115610554 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
D Transcription termination factors
E 115616949 TTF1; transcription termination factor 1 isoform X1 K15225 TTF1; transcription termination factor 1
E 115617609 CAVIN1; caveolae-associated protein 1 K19387 PTRF; polymerase I and transcript release factor
D Others
E 115607917 NOLC1; nucleolar and coiled-body phosphoprotein 1 isoform X1 K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E 115611911 GTF2B; transcription initiation factor IIB isoform X1 K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E 115610338 general transcription factor IIE subunit 1-like K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E 115601458 GTF2E1; general transcription factor IIE subunit 1 K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024