+E	Transcription factors	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Factors - Shewanella halotolerans</h2>
%<!-- w=600, -->
!
A<b>Eukaryotic type</b>
B  Basic leucine zipper (bZIP)
C    AP-1(-like) components, Jun
C    AP-1(-like) components, Fos
C    AP-1(-like) components, Maf
C    AP-1(-like) components, NF-E2
C    AP-1(-like) components, Fungal regulators
C    AP-1(-like) components, CRE-BP/ATF
C    CREB
C    C/EBP-like factors
C    bZIP/PAR
C    Plant bZIP factors
C    ZIP only
B  Basic helix-loop-helix (bHLH)
C    Ubiquitous (class A) factors
C    Myogenic transcription factors
C    Achaete-Scute
C    Tal/Twist/Atonal/Hen, Lymphoid factors
C    Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C    Tal/Twist/Atonal/Hen, HEN
C    Tal/Twist/Atonal/Hen, Mesp
C    Tal/Twist/Atonal/Hen, Atonal
C    Tal/Twist/Atonal/Hen, Pancreatic factors
C    Hairy, Hairy/E(SPL)
C    Hairy, Fungal regulators
C    Factors with PAS domain
C    Yabby
C    INO
C    HLH domain only
B  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C    Ubiquitous bHLH-ZIP factors
C    Cell cycle controlling factors, Myc
C    Cell cycle controlling factors, Mad/Max
C    Other bHLH-ZIP factors
B  Other basic domains
C    NF-1
C    RF-X
C    AP-2 (bHSH)
B  Zinc finger
C    Cys4 thyroid hormone receptor-like
C    Cys4 hepatocyte nuclear factor 4-like
C    Cys4 estrogen receptor-like
C    Cys4 nerve growth factor IB-like
C    Cys4 Fushi tarazu-F1-like
C    Cys4 germ cell nuclear factor
C    Cys4 Knirps/DAX1-like
C    Cys4 GATA-factors
C    Cys2His2 SP/KLF family and related proteins
C    Cys2His2 GLI-like
C    Cys2His2 Snail
C    Cys2His2 BTB-ZF factors
C    Cys2His2 BED
C    Cys2His2 PRDM
C    Cys2His2 metabolic regulators in fungi
C    Cys2His2 others
C    Cys2HisCys zinc factors
C    Cys3His zinc factors
C    Cys2CysHis zinc factors
C    CXXC CpG-binding proteins
C    Cys6 metabolic regulators in fungi
C    Other zinc fingers
B  Helix-turn-helix
C    Homeo domain ANTP: HOXL
C    Homeo domain ANTP: NKL
C    Homeo domain Paired-related
C    Homeo domain LIM
C    Homeo domain POU
C    Homeo domain SINE
C    Homeo domain ZF
C    Homeo domain CUT
C    Homeo domain PROS
C    Homeo domain TALE
C    Homeo domain other
C    Fork head/winged helix developmental regulators
C    Fork head/winged helix tissue-specific regulators
C    Fork head/winged helix cell cycle-controlling factors, E2F
C    Fork head/winged helix cell cycle-controlling factors, DP
C    Fork head/winged helix other regulators
C    Heat shock factors
C    Tryptophan clusters Myb, Myb-factors
C    Tryptophan clusters Myb, Myb-like factors
C    Tryptophan clusters Ets-type
C    Tryptophan clusters interferon-regulating factors
C    TEA domain
C    ARID
B  beta-Scaffold factors with minor groove contacts
C    RHR (Rel homology region) Rel/Ankyrin
C    RHR (Rel homology region) Ankyrin only
C    RHR (Rel homology region) NF-AT
C    STAT
C    p53
C    MADS-box regulators of differentiation, MEF-2
C    MADS-box regulators of differentiation, Homeotic genes
C    MADS-box regulators of differentiation, Yeast regulators
C    MADS-box responders to external signals
C    SAND domain-containing proteins
C    TATA-binding proteins
C    HMG SOX
C    HMG TCF-1
C    HMG2-related
C    UBF
C    Other HMG box factors
C    Heteromeric CCAAT factors
C    Grainyhead
C    Cold-shock domain factors, DbpA-like
C    Cold-shock domain factors, YB-1/DbpB-like
C    Cold-shock domain factors, FRG Y2-like
C    Runt
C    MYRF
B  Other transcription factors
C    HMGI(Y)
C    NUPR
E        Line #4
C    Pocket domain Rb
C    Pocket domain CBP
C    T-box
C    DMRT
C    LRRFIP
C    TCP
C    AP2/ERF
C    WRKY
C    LOB
C    Copper-fist proteins fungal regulators
C    Others
#
A<b>Prokaryotic type</b>
B  Helix-turn-helix
C    AraC family
D      K0H81_08205 helix-turn-helix domain-containing protein	K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein 
D      K0H81_01940 AraC family transcriptional regulator	K13652 K13652; AraC family transcriptional regulator 
D      K0H81_12630 helix-turn-helix domain-containing protein	K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
C    LysR family
D      K0H81_05865 transcriptional regulator GcvA	K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator 
D      K0H81_07320 gcvA; transcriptional regulator GcvA	K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator 
D      K0H81_01490 ilvY; HTH-type transcriptional activator IlvY	K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC 
D      K0H81_04640 LysR family transcriptional regulator	K03576 metR; LysR family transcriptional regulator, regulator for metE and metH 
D      K0H81_14895 nhaR; transcriptional activator NhaR	K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA 
D      K0H81_14940 oxyR; hydrogen peroxide-inducible genes transcriptional activator OxyR	K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator 
D      K0H81_10530 LysR family transcriptional regulator ArgP	K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor 
D      K0H81_11730 cysB; HTH-type transcriptional regulator CysB	K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator 
D      K0H81_04550 LysR family transcriptional regulator	K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator 
D      K0H81_16560 LysR family transcriptional regulator	K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon 
D      K0H81_13800 LysR family transcriptional regulator	K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator 
D      K0H81_05145 LysR family transcriptional regulator	K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator 
C    DeoR family
C    LacI family
D      K0H81_11350 LacI family DNA-binding transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
D      K0H81_14555 LacI family DNA-binding transcriptional regulator	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
C    GntR family
D      K0H81_19750 hutC; histidine utilization repressor	K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor 
D      K0H81_08775 fadR; fatty acid metabolism transcriptional regulator FadR	K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA 
D      K0H81_17860 pdhR; pyruvate dehydrogenase complex transcriptional repressor PdhR	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex 
C    TetR/AcrR family
D      K0H81_18165 slmA; nucleoid occlusion factor SlmA	K05501 slmA; TetR/AcrR family transcriptional regulator 
D      K0H81_01550 TetR/AcrR family transcriptional regulator	K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness 
D      K0H81_06055 TetR/AcrR family transcriptional regulator	K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon 
D      K0H81_13485 TetR/AcrR family transcriptional regulator	K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor 
D      K0H81_00680 fabR; HTH-type transcriptional repressor FabR	K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator 
C    Lrp/AsnC family
D      K0H81_16160 asnC; transcriptional regulator AsnC	K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 
D      K0H81_01560 Lrp/AsnC family transcriptional regulator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      K0H81_09590 lrp; leucine-responsive transcriptional regulator Lrp	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      K0H81_18930 Lrp/AsnC family transcriptional regulator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
C    LuxR family
C    MarR family
D      K0H81_10885 slyA; transcriptional regulator SlyA	K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin 
D      K0H81_06810 MarR family transcriptional regulator	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
D      K0H81_16075 MarR family transcriptional regulator	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
C    MerR family
D      K0H81_17755 zntR; Zn(2+)-responsive transcriptional regulator	K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA 
C    Fur family
D      K0H81_11540 fur; ferric iron uptake transcriptional regulator	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
C    IclR family
C    CRP/FNR family
D      K0H81_03050 crp; cAMP-activated global transcriptional regulator CRP	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
D      K0H81_09765 etrA; electron transport transcriptional regulator EtrA	K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein 
D      K0H81_16860 helix-turn-helix domain-containing protein	K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein 
D      K0H81_17335 Crp/Fnr family transcriptional regulator	K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator 
C    Rrf2 family
D      K0H81_08095 iscR; Fe-S cluster assembly transcriptional regulator IscR	K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor 
D      K0H81_20005 Rrf2 family transcriptional regulator	K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor 
C    ArsR family
D      K0H81_02170 metalloregulator ArsR/SmtB family transcription factor	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor 
D      K0H81_14640 metalloregulator ArsR/SmtB family transcription factor	K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator 
D      K0H81_00115 metalloregulator ArsR/SmtB family transcription factor	K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator 
C    XRE family
C    PadR family
C    Other families
D      K0H81_09460 MurR/RpiR family transcriptional regulator	K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator 
D      K0H81_00730 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      K0H81_01720 fis; DNA-binding transcriptional regulator Fis	K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein 
D      K0H81_14735 trpR; trp operon repressor	K03720 trpR; TrpR family transcriptional regulator, trp operon repressor 
D      K0H81_13245 sigma-54-dependent Fis family transcriptional regulator	K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein 
D      K0H81_18775 sigma-54-dependent Fis family transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      K0H81_04165 sigma 54-interacting transcriptional regulator	K12146 hyfR; hydrogenase-4 transcriptional activator 
D      K0H81_03415 norR; nitric oxide reductase transcriptional regulator NorR	K12266 norR; anaerobic nitric oxide reductase transcription regulator 
D      K0H81_06985 helix-turn-helix domain-containing protein	K02647 cdaR; carbohydrate diacid regulator 
D      K0H81_19075 helix-turn-helix transcriptional regulator	K07729 K07729; putative transcriptional regulator 
B  Ribbon-helix-helix
C    CopG family
C    Other families
D      K0H81_02685 metJ; met regulon transcriptional regulator MetJ	K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor 
D      K0H81_03200 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] 
B  Other transcription factors
C    BglG family
C    Others
D      K0H81_17695 NosR/NirI family protein	K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator 
D      K0H81_05220 BolA family transcriptional regulator	K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator 
D      K0H81_20140 ParB/RepB/Spo0J family partition protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      K0H81_13065 rfaH; transcription/translation regulatory transformer protein RfaH	K05785 rfaH; transcriptional antiterminator RfaH 
D      K0H81_15745 argR; transcriptional regulator ArgR	K03402 argR; transcriptional regulator of arginine metabolism 
D      K0H81_12785 tyrR; transcriptional regulator TyrR	K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport 
D      K0H81_10515 glycine cleavage system transcriptional repressor	K03567 gcvR; glycine cleavage system transcriptional repressor 
D      K0H81_07155 pspF; phage shock protein operon transcriptional activator	K03974 pspF; psp operon transcriptional activator 
D      K0H81_07170 pspC; envelope stress response membrane protein PspC	K03973 pspC; phage shock protein C 
D      K0H81_13730 AlpA family transcriptional regulator	K07733 alpA; prophage regulatory protein 
D      K0H81_14360 YqgE/AlgH family protein	K07735 algH; putative transcriptional regulator 
D      K0H81_16320 dksA; RNA polymerase-binding protein DksA	K06204 dksA; RNA polymerase-binding transcription factor 
D      K0H81_14125 nrdR; transcriptional regulator NrdR	K07738 nrdR; transcriptional repressor NrdR 
D      K0H81_18055 mraZ; division/cell wall cluster transcriptional repressor MraZ	K03925 mraZ; transcriptional regulator MraZ 
!
#<hr>
#[ <a href="/kegg/brite.html">BRITE</a> | <a href="/kegg/kegg2.html">KEGG2</a> | <a href="/kegg/">KEGG</a> ]<br>
#Last updated: June 7, 2024
#<br>Classification taken and modified from <a href="http://www.gene-regulation.com/pub/databases.html#transfac">TRANSFAC 7.0</a>