+D GENES KO #

  KEGG Orthology (KO) - Staphylothermus hellenicus

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:shc00010] D Shell_0930 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Shell_1315 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D Shell_0808 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Shell_1565 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Shell_1566 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Shell_0576 glyceraldehyde-3-phosphate dehydrogenase, type II K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D Shell_0577 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Shell_0473 phosphonopyruvate decarboxylase-related protein K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shell_1177 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shell_1567 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shell_0675 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shell_1000 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_1463 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_0999 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1464 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1002 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1461 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1001 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1462 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1005 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Shell_1006 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Shell_1406 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Shell_0356 acetyl coenzyme A synthetase (ADP forming), alpha domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Shell_1214 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Shell_1213 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D Shell_1165 Phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Shell_0821 Aldehyde ferredoxin oxidoreductase K11389 gapor; glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) [EC:1.2.7.6] D Shell_0726 Aldehyde Dehydrogenase K18978 gapN; glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] [EC:1.2.1.90] C 00020 Citrate cycle (TCA cycle) [PATH:shc00020] D Shell_1005 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Shell_1006 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Shell_0335 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shell_0336 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shell_0464 oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D Shell_1000 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_1463 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_0999 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1464 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1002 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1461 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1001 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1462 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00030 Pentose phosphate pathway [PATH:shc00030] D Shell_1315 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D Shell_1471 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Shell_0310 Orotidine 5'-phosphate decarboxylase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D Shell_0416 6-phospho 3-hexuloisomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D Shell_0474 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Shell_0994 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K22199 ppm; phosphopentomutase [EC:5.4.2.7] D Shell_1165 Phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Shell_0794 PfkB domain protein K26208 E2.7.1.239; alpha-D-ribose-1-phosphate 5-kinase (ATP) [EC:2.7.1.239] D Shell_1088 translation initiation factor, aIF-2BII family K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29] D Shell_1087 initiation factor 2B related protein K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29] D Shell_1217 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Shell_0726 Aldehyde Dehydrogenase K18978 gapN; glyceraldehyde-3-phosphate dehydrogenase [NAD(P)+] [EC:1.2.1.90] D Shell_0845 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Shell_1268 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Shell_0125 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Shell_0054 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Shell_0808 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Shell_1565 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] C 00040 Pentose and glucuronate interconversions D Shell_1302 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:shc00051] D Shell_1315 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D Shell_1165 Phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Shell_0619 Nucleotidyl transferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Shell_0698 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Shell_0697 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Shell_1409 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Shell_1302 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D Shell_0304 mannosyl-3-phosphoglycerate synthase K05947 E2.4.1.217; mannosyl-3-phosphoglycerate synthase [EC:2.4.1.217] D Shell_0303 Haloacid dehalogenase domain protein hydrolase type 3 K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70] D Shell_0808 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Shell_1565 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Shell_1566 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:shc00052] D Shell_1318 GHMP kinase K00849 galK; galactokinase [EC:2.7.1.6] D Shell_1317 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Shell_0881 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shell_0840 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shell_0525 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shell_1165 Phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Shell_0930 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Shell_0804 glycoside hydrolase family 1 K01190 lacZ; beta-galactosidase [EC:3.2.1.23] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:shc00500] D Shell_1057 glycoside hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Shell_0798 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D Shell_1054 glycosyl transferase group 1 K00703 glgA; starch synthase [EC:2.4.1.21] D Shell_0571 glycosyl transferase group 1 K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Shell_1059 Alpha-amylase K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1] D Shell_0233 alpha amylase catalytic region K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D Shell_1055 4-alpha-glucanotransferase K22451 jgt; 4-alpha-glucanotransferase [EC:2.4.1.25] D Shell_1060 Uncharacterized protein probably involved in trehalose biosynthesis-like protein K16146 pep2; maltokinase [EC:2.7.1.175] D Shell_0727 glycosyl transferase group 1 K13057 treT; trehalose synthase [EC:2.4.1.245] D Shell_1165 Phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Shell_0930 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Shell_1315 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:shc00520] D Shell_0921 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Shell_0015 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shell_0922 sugar isomerase (SIS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shell_1620 Nucleotidyl transferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D Shell_0930 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Shell_1165 Phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Shell_1318 GHMP kinase K00849 galK; galactokinase [EC:2.7.1.6] D Shell_1317 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Shell_0881 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shell_0840 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shell_0525 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shell_1315 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] D Shell_0619 Nucleotidyl transferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Shell_0698 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Shell_0697 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Shell_1409 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] C 00620 Pyruvate metabolism [PATH:shc00620] D Shell_1000 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_1463 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_0999 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1464 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1002 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1461 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1001 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1462 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1005 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Shell_1006 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Shell_1406 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D Shell_1567 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shell_0356 acetyl coenzyme A synthetase (ADP forming), alpha domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Shell_1214 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Shell_1213 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D Shell_0940 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shell_0464 oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D Shell_0675 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:shc00630] D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shell_1022 biotin/lipoyl attachment domain-containing protein K15037 K15037; biotin carboxyl carrier protein D Shell_0267 Haloacid dehalogenase domain protein hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Shell_1668 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Shell_1319 SPP-like hydrolase K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18] D Shell_1412 ribulose bisphosphate carboxylase, type III K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D Shell_0642 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shell_1356 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shell_1353 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Shell_1352 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Shell_1354 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shell_1357 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Shell_0091 hypothetical protein K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D Shell_0054 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] C 00640 Propanoate metabolism [PATH:shc00640] D Shell_0356 acetyl coenzyme A synthetase (ADP forming), alpha domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Shell_1214 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Shell_1213 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D Shell_1000 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_1463 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_0999 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1464 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1002 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1461 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1001 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1462 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1022 biotin/lipoyl attachment domain-containing protein K15037 K15037; biotin carboxyl carrier protein D Shell_0815 Acetylornithine transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Shell_0336 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shell_0335 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00650 Butanoate metabolism [PATH:shc00650] D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shell_0940 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shell_0941 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Shell_0815 Acetylornithine transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Shell_1000 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_1463 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_0999 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1464 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1002 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1461 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1001 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1462 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1005 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Shell_1006 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Shell_1112 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00660 C5-Branched dibasic acid metabolism D Shell_0336 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shell_0335 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] C 00562 Inositol phosphate metabolism [PATH:shc00562] D Shell_0246 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Shell_0517 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D Shell_1566 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:shc00190] D Shell_0145 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Shell_0143 NADH dehydrogenase (quinone) K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D Shell_0134 respiratory-chain NADH dehydrogenase subunit 1 K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Shell_1300 H(+)-transporting two-sector ATPase K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D Shell_1301 H(+)-transporting two-sector ATPase K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D Shell_1292 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D Shell_1297 H+transporting two-sector ATPase E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D Shell_1294 conserved hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D Shell_1295 V-type ATPase 116 kDa subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D Shell_1296 H+transporting two-sector ATPase C subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D Shell_0333 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:shc00710] D Shell_1412 ribulose bisphosphate carboxylase, type III K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D Shell_0577 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Shell_0576 glyceraldehyde-3-phosphate dehydrogenase, type II K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D Shell_0808 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Shell_1471 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Shell_1566 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00720 Other carbon fixation pathways [PATH:shc00720] D Shell_1000 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_1463 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_0999 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1464 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1002 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1461 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1001 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1462 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_0675 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shell_0464 oxaloacetate decarboxylase alpha subunit K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D Shell_0335 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shell_0336 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shell_1005 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Shell_1006 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Shell_1022 biotin/lipoyl attachment domain-containing protein K15037 K15037; biotin carboxyl carrier protein D Shell_0844 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit C 00680 Methane metabolism [PATH:shc00680] D Shell_0724 formate dehydrogenase, alpha subunit K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6] D Shell_0844 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D Shell_1356 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shell_0054 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Shell_1177 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shell_0808 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Shell_1565 protein of unknown function DUF100 K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] D Shell_0416 6-phospho 3-hexuloisomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D Shell_0310 Orotidine 5'-phosphate decarboxylase K08093 hxlA; 3-hexulose-6-phosphate synthase [EC:4.1.2.43] D Shell_0390 Tetrahydromethanopterin S-methyltransferase K00584 mtrH; tetrahydromethanopterin S-methyltransferase subunit H [EC:7.2.1.4] D Shell_1000 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_1463 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_0999 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1464 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1002 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1461 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1001 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1462 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_0675 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shell_0473 phosphonopyruvate decarboxylase-related protein K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shell_0240 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shell_0273 HAD-superfamily hydrolase, subfamily IB (PSPase-like) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Shell_1158 Pyridoxal-dependent decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00910 Nitrogen metabolism [PATH:shc00910] D Shell_0305 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D Shell_0642 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shell_1408 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shell_0583 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00920 Sulfur metabolism [PATH:shc00920] D Shell_0468 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Shell_0466 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Shell_1454 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Shell_0450 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:shc00061] D Shell_0184 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:shc00071] D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shell_1406 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:shc00561] D Shell_0054 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Shell_0551 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] C 00564 Glycerophospholipid metabolism [PATH:shc00564] D Shell_0557 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Shell_0092 hypothetical protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Shell_0105 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Shell_0554 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Shell_1526 3-dehydroquinate synthase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] D Shell_1468 geranylgeranylglyceryl phosphate synthase family protein K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41] D Shell_1316 UbiA prenyltransferase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D Shell_0178 protein of unknown function DUF46 K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism D Shell_0804 glycoside hydrolase family 1 K01190 lacZ; beta-galactosidase [EC:3.2.1.23] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:shc00230] D Shell_1289 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Shell_0994 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K22199 ppm; phosphopentomutase [EC:5.4.2.7] D Shell_1165 Phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Shell_1217 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Shell_0029 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Shell_1505 phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Shell_1639 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shell_1210 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D Shell_1627 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Shell_0033 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shell_1397 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Shell_1275 adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D Shell_0031 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shell_0989 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D Shell_0419 adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D Shell_0404 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Shell_0007 Adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D Shell_1200 protein of unknown function DUF265 K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D Shell_1492 histidine triad (HIT) protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D Shell_0466 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Shell_0468 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Shell_0583 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:shc00240] D Shell_0217 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shell_0216 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Shell_0214 amidohydrolase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Shell_0213 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Shell_0215 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D Shell_0218 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Shell_0219 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Shell_0016 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Shell_1639 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shell_0057 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Shell_0220 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Shell_1418 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Shell_0341 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D Shell_0647 Uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Shell_0989 AMP phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D Shell_0745 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Shell_1397 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Shell_1400 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D Shell_0170 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Shell_1399 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Shell_0579 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:shc00250] D Shell_0539 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Shell_0927 Beta-aspartyl-peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shell_0031 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shell_0029 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Shell_0217 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shell_0216 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Shell_0815 Acetylornithine transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Shell_1408 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shell_0305 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D Shell_0642 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shell_0015 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shell_0922 sugar isomerase (SIS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] C 00260 Glycine, serine and threonine metabolism [PATH:shc00260] D Shell_1584 Pyridoxal-5'-phosphate-dependent protein beta subunit K01733 thrC; threonine synthase [EC:4.2.3.1] D Shell_0734 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Shell_0640 Pyridoxal-5'-phosphate-dependent protein beta subunit K01733 thrC; threonine synthase [EC:4.2.3.1] D Shell_1356 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shell_0054 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Shell_0473 phosphonopyruvate decarboxylase-related protein K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shell_0240 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shell_0273 HAD-superfamily hydrolase, subfamily IB (PSPase-like) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Shell_1353 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Shell_1352 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Shell_1354 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shell_1357 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Shell_0272 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] C 00270 Cysteine and methionine metabolism [PATH:shc00270] D Shell_0450 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shell_0387 Methionine synthase II (cobalamin-independent)-like protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Shell_1152 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shell_0995 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Shell_1012 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Shell_0279 purine or other phosphorylase family 1 K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D Shell_0042 methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D Shell_0603 S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D Shell_0420 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D Shell_0582 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D Shell_1546 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shell_1536 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Shell_0539 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Shell_0240 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shell_0238 ParB domain protein nuclease K23370 serK; L-serine kinase (ADP) [EC:2.7.1.226] C 00280 Valine, leucine and isoleucine degradation [PATH:shc00280] D Shell_1022 biotin/lipoyl attachment domain-containing protein K15037 K15037; biotin carboxyl carrier protein D Shell_0574 6-phosphogluconate dehydrogenase NAD-binding protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shell_1112 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis D Shell_0272 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] C 00300 Lysine biosynthesis [PATH:shc00300] D Shell_0678 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shell_1108 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] C 00310 Lysine degradation D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00220 Arginine biosynthesis [PATH:shc00220] D Shell_0595 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Shell_0642 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shell_0583 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Shell_0305 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D Shell_0539 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:shc00330] D Shell_0059 Uncharacterized protein putative amidase-like protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D Shell_0616 Orn/DAP/Arg decarboxylase 2 K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Shell_1332 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Shell_1012 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Shell_0995 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Shell_0539 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism C 00350 Tyrosine metabolism [PATH:shc00350] D Shell_0539 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Shell_1158 Pyridoxal-dependent decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D Shell_1406 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00360 Phenylalanine metabolism D Shell_0539 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00380 Tryptophan metabolism D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:shc00400] D Shell_0539 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:shc00410] D Shell_1158 Pyridoxal-dependent decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D Shell_0815 Acetylornithine transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D Shell_1069 Protein of unknown function DUF137 K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D Shell_0579 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] C 00430 Taurine and hypotaurine metabolism D Shell_1251 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:shc00450] D Shell_0387 Methionine synthase II (cobalamin-independent)-like protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Shell_0422 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Shell_1537 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Shell_0468 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Shell_0933 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:shc00460] D Shell_1057 glycoside hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21] D Shell_1251 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shell_0927 Beta-aspartyl-peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shell_1356 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism C 00480 Glutathione metabolism [PATH:shc00480] D Shell_1251 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shell_0653 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shell_1012 Spermine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:shc00511] D Shell_0804 glycoside hydrolase family 1 K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Shell_1324 Alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:shc00730] D Shell_0767 phosphomethylpyrimidine kinase K21219 thiDN; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D Shell_0358 Thiamine biosynthesis protein-like protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shell_0764 thiazole biosynthesis enzyme K22699 thi4; sulfide-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.59] D Shell_0827 Thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Shell_1200 protein of unknown function DUF265 K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D Shell_0404 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Shell_0762 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:shc00740] D Shell_0316 GTP cyclohydrolase IIa K08096 gch3; GTP cyclohydrolase IIa [EC:3.5.4.29] D Shell_0345 bifunctional deaminase-reductase domain protein K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D Shell_0313 34-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D Shell_0315 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Shell_0314 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Shell_1267 protein of unknown function DUF120 K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161] D Shell_0617 cytidyltransferase-related domain protein K14656 ribL; FAD synthetase [EC:2.7.7.2] D Shell_1289 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Shell_1340 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism D Shell_1584 Pyridoxal-5'-phosphate-dependent protein beta subunit K01733 thrC; threonine synthase [EC:4.2.3.1] D Shell_0734 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Shell_0640 Pyridoxal-5'-phosphate-dependent protein beta subunit K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:shc00760] D Shell_0347 Quinolinate phosphoribosyl transferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Shell_1529 nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D Shell_0955 cytidyltransferase-related domain protein K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D Shell_1139 NAD+ synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D Shell_0068 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:shc00770] D Shell_1067 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Shell_1066 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Shell_1068 kinase (sugar kinase superfamily)-like protein K06982 pok; pantoate kinase [EC:2.7.1.169] D Shell_1069 Protein of unknown function DUF137 K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D Shell_1070 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Shell_1632 Protein of unknown function DUF359 K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237] D Shell_0579 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D Shell_1158 Pyridoxal-dependent decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00780 Biotin metabolism [PATH:shc00780] D Shell_0184 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shell_0953 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:shc00785] D Shell_0636 Radical SAM domain protein K09711 lipS1; lipoyl synthase D Shell_0635 Radical SAM domain protein K24689 lipS2; lipoyl synthase D Shell_0633 hypothetical protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D Shell_0634 biotin/lipoate A/B protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D Shell_1353 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Shell_1352 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Shell_1354 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shell_1357 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:shc00790] D Shell_1376 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Shell_1375 protein of unknown function DUF198 K17488 mptA; GTP cyclohydrolase IV [EC:3.5.4.39] D Shell_1372 protein of unknown function DUF115 K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Shell_1377 beta-ribofuranosylaminobenzene 5'-phosphate synthase family K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D Shell_1303 beta-lactamase domain protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Shell_1326 beta-lactamase domain protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Shell_0915 beta-lactamase domain protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Shell_1373 flavoprotein K18853 dmrX; dihydromethanopterin reductase (acceptor) [EC:1.5.99.15] D Shell_0819 Radical SAM domain protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shell_0818 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Shell_0350 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Shell_0512 molybdenum cofactor synthesis domain protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shell_0831 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Shell_0609 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Shell_0812 MoeA domain protein domain I and II K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Shell_0649 molybdenum hydroxylase accessory protein, YgfJ family K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Shell_0725 Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:shc00670] D Shell_1356 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shell_1354 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shell_1399 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Shell_0309 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism D Shell_1643 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis D Shell_1340 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:shc00900] D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shell_1112 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D Shell_1110 hypothetical protein K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D Shell_0645 hydroxymethylglutaryl-CoA reductase, degradative K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D Shell_0601 mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D Shell_0286 aspartate/glutamate/uridylate kinase K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26] D Shell_0173 protein of unknown function DUF521 K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182] D Shell_0172 protein of unknown function DUF126 K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182] D Shell_0174 UbiD family decarboxylase K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126] D Shell_1340 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Shell_1645 isopentenyl-diphosphate delta-isomerase, type 2 K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D Shell_0308 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Shell_1211 undecaprenyl diphosphate synthase K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:shc00523] D Shell_0903 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shell_0014 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shell_1620 Nucleotidyl transferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D Shell_0900 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shell_0904 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shell_0901 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:shc00946] D Shell_1057 glycoside hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis D Shell_0468 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:shc00521] D Shell_0930 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] D Shell_1165 Phosphoglucosamine mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Shell_0517 Myo-inositol-1-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4] D Shell_0246 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Shell_0903 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shell_0014 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shell_1620 Nucleotidyl transferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D Shell_0900 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shell_0904 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shell_0901 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Shell_0930 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis D Shell_0903 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shell_0014 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shell_1620 Nucleotidyl transferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] C 00401 Novobiocin biosynthesis D Shell_0539 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D Shell_0184 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics C 00999 Biosynthesis of various plant secondary metabolites [PATH:shc00999] D Shell_1152 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shell_1057 glycoside hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:shc00362] D Shell_0940 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shell_0941 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation D Shell_1340 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:shc00625] D Shell_1406 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:shc00633] D Shell_0844 4Fe-4S ferredoxin iron-sulfur binding domain protein K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D Shell_1000 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_1463 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D Shell_0999 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1464 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D Shell_1002 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1461 pyruvate/ketoisovalerate oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D Shell_1001 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D Shell_1462 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:shc00626] D Shell_1406 zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:shc03020] D Shell_1665 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D Shell_1664 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D Shell_1663 DNA-directed RNA polymerase, subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D Shell_1652 RNA polymerase insert K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D Shell_0156 RNA polymerase dimerization K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D Shell_1634 DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D Shell_0021 RNA polymerase Rpb4 K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D Shell_1556 hypothetical protein K03052 rpoG; DNA-directed RNA polymerase subunit G [EC:2.7.7.6] D Shell_1666 RNA polymerase Rpb5 K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D Shell_1183 RNA polymerase Rpb6 K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D Shell_1648 RNA polymerase, N/8 Kd subunit K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D Shell_1331 RNA polymerase Rbp10 K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D Shell_1457 conserved hypothetical protein K00960 rpo13; DNA-directed RNA polymerase subunit 13 [EC:2.7.7.6] C 03022 Basal transcription factors [PATH:shc03022] D Shell_1203 Zinc finger TFIIB-type domain protein K03124 TFIIB; transcription initiation factor TFIIB D Shell_1329 Transcription factor TFIIB cyclin-related protein K03124 TFIIB; transcription initiation factor TFIIB D Shell_1127 TATA-box binding family protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D Shell_1547 Transcription factor TFIIE, alpha subunit K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:shc03010] D Shell_1647 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Shell_1438 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Shell_1654 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Shell_1424 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Shell_1658 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Shell_1429 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Shell_1649 ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Shell_1656 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Shell_1653 ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Shell_1660 ribosomal protein S23 (S12) K02950 RP-S12; small subunit ribosomal protein S12 D Shell_1655 ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Shell_1430 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Shell_1626 Ribosomal S13S15 domain protein K02956 RP-S15; small subunit ribosomal protein S15 D Shell_1435 ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Shell_1440 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Shell_1623 ribosomal protein S3Ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D Shell_1432 Ribosomal protein S4E, central domain protein K02987 RP-S4e; small subunit ribosomal protein S4e D Shell_1637 Ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D Shell_1206 ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D Shell_1560 40S ribosomal protein S17 K02962 RP-S17e; small subunit ribosomal protein S17e D Shell_1393 Ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D Shell_1631 Ribosomal protein S24e K02974 RP-S24e; small subunit ribosomal protein S24e D Shell_1595 Ribosomal protein S26E K02976 RP-S26e; small subunit ribosomal protein S26e D Shell_0180 Ribosomal protein S27E K02978 RP-S27e; small subunit ribosomal protein S27e D Shell_1630 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D Shell_1641 Ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e D Shell_1196 Ribosomal protein S30 K02983 RP-S30e; small subunit ribosomal protein S30e D Shell_1382 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Shell_1444 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Shell_1447 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Shell_1431 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Shell_1428 ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Shell_1381 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Shell_1383 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Shell_1380 ribosomal protein 60S K02869 RP-L12; large subunit ribosomal protein L12 D Shell_1650 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Shell_1434 50S ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Shell_1422 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Shell_1425 ribosomal protein L18P/L5E K02881 RP-L18; large subunit ribosomal protein L18 D Shell_1439 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Shell_1445 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D Shell_1433 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Shell_1437 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Shell_1423 ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Shell_1446 50S ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e D Shell_1642 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D Shell_0162 ribosomal protein L10.e K02866 RP-L10e; large subunit ribosomal protein L10e D Shell_0657 rpl13; ribosomal protein L13 K02873 RP-L13e; large subunit ribosomal protein L13e D Shell_1417 Ribosomal protein L14E/L6E/L27E-like protein K02875 RP-L14e; large subunit ribosomal protein L14e D Shell_1617 Ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D Shell_1651 ribosomal protein L15 K02883 RP-L18e; large subunit ribosomal protein L18e D Shell_1426 Ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D Shell_0022 Ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D Shell_1640 Ribosomal protein L24E K02896 RP-L24e; large subunit ribosomal protein L24e D Shell_1662 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02908 RP-L30e; large subunit ribosomal protein L30e D Shell_1390 Ribosomal protein L31E-like protein K02910 RP-L31e; large subunit ribosomal protein L31e D Shell_1427 Ribosomal protein L32e K02912 RP-L32e; large subunit ribosomal protein L32e D Shell_1419 Ribosomal protein L34e K02915 RP-L34e; large subunit ribosomal protein L34e D Shell_0520 Ribosomal protein L35AE/L33A-like protein K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D Shell_1521 Ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e D Shell_1608 Ribosomal L37ae protein K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D Shell_1599 hypothetical protein K02923 RP-L38e; large subunit ribosomal protein L38e D Shell_1391 Ribosomal protein L39e K02924 RP-L39e; large subunit ribosomal protein L39e D Shell_0104 Ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D Shell_0179 Ribosomal protein L44E K02929 RP-L44e; large subunit ribosomal protein L44e D Shell_1388 Ribosomal LX protein K02944 RP-LX; large subunit ribosomal protein LX D Shell_R0023 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shell_R0022 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shell_R0042 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:shc00970] D Shell_R0048 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shell_R0018 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shell_R0038 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shell_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0017 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0032 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0045 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shell_R0006 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shell_R0025 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shell_R0002 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shell_R0029 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shell_R0033 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shell_R0011 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shell_R0020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shell_R0034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shell_R0012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shell_R0005 tRNA-His K14226 tRNA-His; tRNA His D Shell_R0021 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shell_R0046 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0007 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0003 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0008 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0001 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shell_R0027 tRNA-Met K14230 tRNA-Met; tRNA Met D Shell_R0040 tRNA-Met K14230 tRNA-Met; tRNA Met D Shell_R0035 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shell_R0019 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shell_R0037 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shell_R0047 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shell_R0036 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shell_R0009 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shell_R0044 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shell_R0041 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shell_R0016 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shell_R0024 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shell_R0013 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shell_R0026 tRNA-Val K14237 tRNA-Val; tRNA Val D Shell_R0014 tRNA-Val K14237 tRNA-Val; tRNA Val D Shell_R0030 tRNA-Val K14237 tRNA-Val; tRNA Val D Shell_R0004 tRNA-Val K14237 tRNA-Val; tRNA Val D Shell_1643 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shell_1195 glutamyl-tRNA(Gln) amidotransferase, subunit D K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D Shell_1194 aspartyl-tRNA(Asn) amidotransferase, B subunit K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D Shell_1379 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shell_0519 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D Shell_1072 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shell_0472 tRNA synthetase class II (D K and N) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shell_1333 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Shell_1487 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shell_1091 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shell_0280 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shell_0261 cysteinyl-tRNA synthetase K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D Shell_0933 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shell_0053 aminoacyl-tRNA synthetase class Ia K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shell_0700 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shell_0748 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shell_0712 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Shell_0817 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shell_1306 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shell_1475 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shell_0558 transcriptional regulator, MarR family K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shell_0566 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shell_1578 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shell_0311 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:shc03060] D Shell_1421 SecY protein K03076 secY; preprotein translocase subunit SecY D Shell_0025 GTP-binding signal recognition particle SRP54 G-domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shell_R0043 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Shell_1386 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shell_1385 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D Shell_1205 Ribonucleoprotein complex SRP, Srp19 component K03105 SRP19; signal recognition particle subunit SRP19 D Shell_1180 peptidase S26B, signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D Shell_0190 peptidase S26B, signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:shc04122] D Shell_0350 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Shell_0819 Radical SAM domain protein K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shell_0349 MoaD family protein K03636 moaD; sulfur-carrier protein D Shell_0385 thiamineS protein K03636 moaD; sulfur-carrier protein D Shell_0009 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Shell_0818 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Shell_0512 molybdenum cofactor synthesis domain protein K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shell_0358 Thiamine biosynthesis protein-like protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shell_0797 thiamineS protein K03154 thiS; sulfur carrier protein C 03050 Proteasome [PATH:shc03050] D Shell_1551 26S proteasome subunit P45 family K03420 psmR; proteasome regulatory subunit D Shell_1613 proteasome endopeptidase complex, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D Shell_1527 Proteasome endopeptidase complex K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Shell_1533 Proteasome endopeptidase complex K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:shc03018] D Shell_0158 RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)-like protein K07573 CSL4; exosome complex component CSL4 D Shell_1611 K-like, type 1, subgroup K03679 RRP4; exosome complex component RRP4 D Shell_1609 3' exoribonuclease K12589 RRP42; exosome complex component RRP42 D Shell_1610 exosome complex exonuclease 1 K11600 RRP41; exosome complex component RRP41 D Shell_1177 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] B B 09124 Replication and repair C 03030 DNA replication [PATH:shc03030] D Shell_1579 TOPRIM domain protein K02316 dnaG; DNA primase [EC:2.7.7.101] D Shell_1169 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Shell_1580 DNA polymerase Pol2 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Shell_1596 DNA-directed DNA polymerase K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Shell_0544 DNA polymerase B region K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Shell_1229 MCM family protein K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D Shell_0152 DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102] D Shell_0379 DNA primase, large subunit K18882 priL; DNA primase large subunit D Shell_1079 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_0153 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Shell_1459 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_1231 Replication factor C K04801 rfcS; replication factor C small subunit D Shell_1232 AAA ATPase central domain protein K04800 rfcL; replication factor C large subunit D Shell_0072 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Shell_1131 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03410 Base excision repair [PATH:shc03410] D Shell_1073 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Shell_1079 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_0153 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Shell_1459 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_0072 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Shell_1131 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Shell_1133 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Shell_1625 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shell_1310 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03420 Nucleotide excision repair [PATH:shc03420] D Shell_0643 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Shell_1079 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_0153 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Shell_1459 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_1131 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03430 Mismatch repair [PATH:shc03430] D Shell_1625 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shell_1310 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shell_1079 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_0153 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Shell_1459 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_1131 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03440 Homologous recombination D Shell_1625 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shell_1310 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03450 Non-homologous end-joining D Shell_0072 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:shc03250] D Shell_1633 DNA-directed RNA polymerase subunit E, RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4 D Shell_1384 NusG antitermination factor K15172 SUPT5H; transcription elongation factor SPT5 D Shell_1173 AAA ATPase central domain protein K12196 VPS4; vacuolar protein-sorting-associated protein 4 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:shc02010] D Shell_0535 extracellular solute-binding protein family 1 K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D Shell_0534 binding-protein-dependent transport systems inner membrane component K15496 wtpB; molybdate/tungstate transport system permease protein D Shell_0533 ABC transporter related protein K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6] D Shell_0667 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Shell_0666 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Shell_0665 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Shell_0513 ABC transporter related protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Shell_1482 ABC transporter related protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Shell_0685 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Shell_0683 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Shell_0682 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Shell_0684 ABC transporter related protein K23537 nupA; general nucleoside transport system ATP-binding protein D Shell_1485 extracellular solute-binding protein family 1 K17315 gtsA; glucose/mannose transport system substrate-binding protein D Shell_1484 binding-protein-dependent transport systems inner membrane component K17316 gtsB; glucose/mannose transport system permease protein D Shell_1483 binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein D Shell_0710 extracellular solute-binding protein family 1 K17237 inoE; inositol-phosphate transport system substrate-binding protein D Shell_0709 binding-protein-dependent transport systems inner membrane component K17238 inoF; inositol-phosphate transport system permease protein D Shell_0708 binding-protein-dependent transport systems inner membrane component K17239 inoG; inositol-phosphate transport system permease protein D Shell_0707 ABC transporter related protein K17240 inoK; inositol-phosphate transport system ATP-binding protein D Shell_1542 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shell_1541 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Shell_1540 binding-protein-dependent transport systems inner membrane component K02038 pstA; phosphate transport system permease protein D Shell_1539 ABC transporter related protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shell_0765 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Shell_0411 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:shc03070] D Shell_1421 SecY protein K03076 secY; preprotein translocase subunit SecY D Shell_1386 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shell_0025 GTP-binding signal recognition particle SRP54 G-domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:shc02020] D Shell_1542 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shell_1368 hypothetical protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D Shell_0407 triphosphoribosyl-dephospho-CoA protein K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D Shell_0642 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shell_0798 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:shc02024] D Shell_1116 solute binding protein-like protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shell_0849 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shell_0459 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shell_0803 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shell_1114 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shell_0850 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shell_0460 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shell_0802 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shell_1113 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shell_0851 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shell_0461 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shell_0801 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shell_1120 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shell_0852 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shell_0462 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shell_0800 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shell_0463 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Shell_1119 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Shell_1421 SecY protein K03076 secY; preprotein translocase subunit SecY D Shell_1386 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shell_0025 GTP-binding signal recognition particle SRP54 G-domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shell_1368 hypothetical protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis C 02040 Flagellar assembly C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Shell_1177 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance C 01502 Vancomycin resistance C 01503 Cationic antimicrobial peptide (CAMP) resistance B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:shc01000] C 01001 Protein kinases [BR:shc01001] D Shell_1628 Mn2+dependent serine/threonine protein kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D Shell_1362 RIO-like kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Shell_1154 RIO-like kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D Shell_0497 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Shell_0483 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Shell_0491 serine/threonine protein kinase with WD40 repeats K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Shell_1368 hypothetical protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:shc01009] D Shell_1366 Translation initiation factor IF2/IF5 K03238 EIF2S2; translation initiation factor 2 subunit 2 D Shell_1536 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Shell_0273 HAD-superfamily hydrolase, subfamily IB (PSPase-like) K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:shc01002] D Shell_1490 peptidase A24A prepilin type IV K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D Shell_0106 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase)-like protein K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D Shell_0033 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shell_0015 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shell_0922 sugar isomerase (SIS) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shell_0653 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shell_0678 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shell_1575 methionine aminopeptidase, type II K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Shell_0409 peptidase M29 aminopeptidase II K19689 ampS; aminopeptidase [EC:3.4.11.-] D Shell_0806 Carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D Shell_1125 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Shell_1410 peptidase zinc-dependent K06974 amzA; archaemetzincin [EC:3.4.-.-] D Shell_0939 peptidase M55 D-aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D Shell_1180 peptidase S26B, signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D Shell_0190 peptidase S26B, signal peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D Shell_0048 Rhomboid family protein K07059 K07059; rhomboid family protein D Shell_1613 proteasome endopeptidase complex, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D Shell_1527 Proteasome endopeptidase complex K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Shell_1533 Proteasome endopeptidase complex K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Shell_0927 Beta-aspartyl-peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shell_1251 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shell_1098 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein D Shell_0952 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein D Shell_0951 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein D Shell_1099 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:shc01003] D Shell_0644 UDP-N-acetylglucosamine--dolichyl-phosphateN-acetylglucosaminephosphotransferase K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15] D Shell_1516 glycosyl transferase group 1 K03844 ALG11; alpha-1,2-mannosyltransferase [EC:2.4.1.131] D Shell_0596 Oligosaccharyl transferase STT3 subunit K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18] D Shell_0706 glycosyl transferase family 2 K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D Shell_1134 GtrA family protein K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D Shell_1054 glycosyl transferase group 1 K00703 glgA; starch synthase [EC:2.4.1.21] D Shell_0304 mannosyl-3-phosphoglycerate synthase K05947 E2.4.1.217; mannosyl-3-phosphoglycerate synthase [EC:2.4.1.217] C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:shc01011] C 01004 Lipid biosynthesis proteins [BR:shc01004] D Shell_0184 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shell_0356 acetyl coenzyme A synthetase (ADP forming), alpha domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Shell_1214 CoA-binding domain protein K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D Shell_1213 ATP-grasp domain protein K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:shc01006] D Shell_0308 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] C 01007 Amino acid related enzymes [BR:shc01007] D Shell_0712 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Shell_1643 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shell_1578 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shell_0311 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Shell_0280 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shell_0817 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shell_0933 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shell_0748 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shell_0053 aminoacyl-tRNA synthetase class Ia K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shell_0700 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shell_1072 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shell_0472 tRNA synthetase class II (D K and N) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shell_0519 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D Shell_1475 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shell_1333 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Shell_1091 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shell_1306 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shell_1487 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shell_1379 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shell_0558 transcriptional regulator, MarR family K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shell_0566 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shell_0261 cysteinyl-tRNA synthetase K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D Shell_0539 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Shell_0717 aminotransferase class I and II K10907 K10907; aminotransferase [EC:2.6.1.-] D Shell_0815 Acetylornithine transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:shc03000] D Shell_1546 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shell_1127 TATA-box binding family protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D Shell_0768 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D Shell_1227 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D Shell_1065 Phosphomethylpyrimidine kinase K22206 thiR; XRE family transcriptional regulator, thiamine biosynthesis regulator D Shell_0518 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D Shell_0631 iron (metal) dependent repressor, DtxR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Shell_0953 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Shell_0728 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D Shell_0944 DNA binding protein, Tfx family K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator D Shell_1199 transcriptional regulator, XRE family K07728 K07728; putative transcriptional regulator D Shell_0232 transcriptional regulator, XRE family K07731 K07731; putative transcriptional regulator D Shell_0435 putative transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D Shell_0762 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 03021 Transcription machinery [BR:shc03021] D Shell_1203 Zinc finger TFIIB-type domain protein K03124 TFIIB; transcription initiation factor TFIIB D Shell_1329 Transcription factor TFIIB cyclin-related protein K03124 TFIIB; transcription initiation factor TFIIB D Shell_1127 TATA-box binding family protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D Shell_1547 Transcription factor TFIIE, alpha subunit K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D Shell_1633 DNA-directed RNA polymerase subunit E, RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4 D Shell_1384 NusG antitermination factor K15172 SUPT5H; transcription elongation factor SPT5 D Shell_1215 protein of unknown function ATP binding protein K24104 GPN; GPN-loop GTPase D Shell_1661 NusA family KH domain protein K02600 nusA; transcription termination/antitermination protein NusA D Shell_1664 DNA-directed RNA polymerase subunit A' K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D Shell_1663 DNA-directed RNA polymerase, subunit A'' K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D Shell_1665 DNA-directed RNA polymerase subunit B K13798 rpoB; DNA-directed RNA polymerase subunit B [EC:2.7.7.6] D Shell_1652 RNA polymerase insert K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D Shell_1634 DNA-directed RNA polymerase K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D Shell_0021 RNA polymerase Rpb4 K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D Shell_1556 hypothetical protein K03052 rpoG; DNA-directed RNA polymerase subunit G [EC:2.7.7.6] D Shell_1666 RNA polymerase Rpb5 K03053 rpoH; DNA-directed RNA polymerase subunit H [EC:2.7.7.6] D Shell_1183 RNA polymerase Rpb6 K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D Shell_0156 RNA polymerase dimerization K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D Shell_1648 RNA polymerase, N/8 Kd subunit K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D Shell_1331 RNA polymerase Rbp10 K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D Shell_1457 conserved hypothetical protein K00960 rpo13; DNA-directed RNA polymerase subunit 13 [EC:2.7.7.6] D Shell_1563 DNA-directed RNA polymerase, M/15 kDa subunit K03057 tfs; transcription factor S D Shell_0155 Transcription factor TFIIS K03057 tfs; transcription factor S C 03019 Messenger RNA biogenesis [BR:shc03019] D Shell_1633 DNA-directed RNA polymerase subunit E, RpoE2 K15171 SUPT4H1; transcription elongation factor SPT4 D Shell_1384 NusG antitermination factor K15172 SUPT5H; transcription elongation factor SPT5 D Shell_1344 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Shell_0074 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Shell_1581 translation factor pelota K06965 PELO; protein pelota D Shell_0255 eRF1 domain 2 protein K03265 ETF1; peptide chain release factor subunit 1 D Shell_1657 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D Shell_0158 RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)-like protein K07573 CSL4; exosome complex component CSL4 D Shell_1611 K-like, type 1, subgroup K03679 RRP4; exosome complex component RRP4 D Shell_1610 exosome complex exonuclease 1 K11600 RRP41; exosome complex component RRP41 D Shell_1609 3' exoribonuclease K12589 RRP42; exosome complex component RRP42 D Shell_1177 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 03041 Spliceosome [BR:shc03041] D Shell_0418 ZPR1-related zinc finger protein K06874 ZPR1; zinc finger protein ZPR1 C 03011 Ribosome [BR:shc03011] D Shell_1623 ribosomal protein S3Ae K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D Shell_1432 Ribosomal protein S4E, central domain protein K02987 RP-S4e; small subunit ribosomal protein S4e D Shell_1637 Ribosomal protein S6e K02991 RP-S6e; small subunit ribosomal protein S6e D Shell_1206 ribosomal protein S8e K02995 RP-S8e; small subunit ribosomal protein S8e D Shell_1560 40S ribosomal protein S17 K02962 RP-S17e; small subunit ribosomal protein S17e D Shell_1393 Ribosomal protein S19e K02966 RP-S19e; small subunit ribosomal protein S19e D Shell_1631 Ribosomal protein S24e K02974 RP-S24e; small subunit ribosomal protein S24e D Shell_1595 Ribosomal protein S26E K02976 RP-S26e; small subunit ribosomal protein S26e D Shell_0180 Ribosomal protein S27E K02978 RP-S27e; small subunit ribosomal protein S27e D Shell_1630 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D Shell_1641 Ribosomal protein S28e K02979 RP-S28e; small subunit ribosomal protein S28e D Shell_1196 Ribosomal protein S30 K02983 RP-S30e; small subunit ribosomal protein S30e D Shell_1446 50S ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e D Shell_1642 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D Shell_0162 ribosomal protein L10.e K02866 RP-L10e; large subunit ribosomal protein L10e D Shell_0657 rpl13; ribosomal protein L13 K02873 RP-L13e; large subunit ribosomal protein L13e D Shell_1417 Ribosomal protein L14E/L6E/L27E-like protein K02875 RP-L14e; large subunit ribosomal protein L14e D Shell_1617 Ribosomal protein L15e K02877 RP-L15e; large subunit ribosomal protein L15e D Shell_1651 ribosomal protein L15 K02883 RP-L18e; large subunit ribosomal protein L18e D Shell_1426 Ribosomal protein L19e K02885 RP-L19e; large subunit ribosomal protein L19e D Shell_0022 Ribosomal protein L21e K02889 RP-L21e; large subunit ribosomal protein L21e D Shell_1640 Ribosomal protein L24E K02896 RP-L24e; large subunit ribosomal protein L24e D Shell_1662 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02908 RP-L30e; large subunit ribosomal protein L30e D Shell_1390 Ribosomal protein L31E-like protein K02910 RP-L31e; large subunit ribosomal protein L31e D Shell_1427 Ribosomal protein L32e K02912 RP-L32e; large subunit ribosomal protein L32e D Shell_1419 Ribosomal protein L34e K02915 RP-L34e; large subunit ribosomal protein L34e D Shell_0520 Ribosomal protein L35AE/L33A-like protein K02917 RP-L35Ae; large subunit ribosomal protein L35Ae D Shell_1521 Ribosomal protein L37e K02922 RP-L37e; large subunit ribosomal protein L37e D Shell_1608 Ribosomal L37ae protein K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D Shell_1599 hypothetical protein K02923 RP-L38e; large subunit ribosomal protein L38e D Shell_1391 Ribosomal protein L39e K02924 RP-L39e; large subunit ribosomal protein L39e D Shell_0104 Ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D Shell_0179 Ribosomal protein L44E K02929 RP-L44e; large subunit ribosomal protein L44e D Shell_1647 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Shell_1438 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Shell_1654 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Shell_1424 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Shell_1658 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Shell_1429 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Shell_1649 ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Shell_1656 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Shell_1653 ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Shell_1660 ribosomal protein S23 (S12) K02950 RP-S12; small subunit ribosomal protein S12 D Shell_1655 ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Shell_1430 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Shell_1626 Ribosomal S13S15 domain protein K02956 RP-S15; small subunit ribosomal protein S15 D Shell_1435 ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Shell_1440 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Shell_1382 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Shell_1444 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Shell_1447 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Shell_1431 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Shell_1428 ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Shell_1381 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Shell_1383 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Shell_1650 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Shell_1434 50S ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Shell_1422 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Shell_1425 ribosomal protein L18P/L5E K02881 RP-L18; large subunit ribosomal protein L18 D Shell_1439 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Shell_1445 ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D Shell_1433 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Shell_1437 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Shell_1423 ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Shell_1380 ribosomal protein 60S K02869 RP-L12; large subunit ribosomal protein L12 D Shell_1388 Ribosomal LX protein K02944 RP-LX; large subunit ribosomal protein LX D Shell_R0042 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shell_R0023 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shell_R0022 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:shc03009] D Shell_1197 Pre-mRNA processing ribonucleoprotein, binding domain protein K14564 NOP56; nucleolar protein 56 D Shell_0147 RNA-binding protein Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D Shell_1607 Brix domain protein K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 D Shell_1396 Suppressor Mra1 family protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260] D Shell_1361 KH domain protein K06961 KRR1; ribosomal RNA assembly protein D Shell_1362 RIO-like kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Shell_1154 RIO-like kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D Shell_0007 Adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D Shell_1511 Protein of unknown function DUF367 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] D Shell_1564 ABC transporter related protein K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D Shell_1531 small GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein D Shell_1436 Ribonuclease P, Rpp29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D Shell_1614 Ribonuclease P-related protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D Shell_1615 RNase P subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D Shell_0175 GTPase or GTP-binding protein-like protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] D Shell_1389 translation initiation factor eIF-6 K03264 EIF6; translation initiation factor 6 D Shell_0401 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3 D Shell_1364 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3 D Shell_1612 Ribosome maturation protein SBDS-like protein K14574 SDO1; ribosome maturation protein SDO1 D Shell_1344 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Shell_0074 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Shell_1018 hypothetical protein K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D Shell_1198 fibrillarin K04795 flpA; fibrillarin-like pre-rRNA processing protein D Shell_1642 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D Shell_1204 hypothetical protein K07569 gar1; RNA-binding protein D Shell_1661 NusA family KH domain protein K02600 nusA; transcription termination/antitermination protein NusA D Shell_0019 ribosomal RNA adenine methylase transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Shell_0425 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shell_0560 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shell_0382 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shell_1414 methyltransferase small K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Shell_1071 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Shell_0045 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Shell_1549 GTP-binding proten HflX K03665 hflX; GTPase D Shell_0256 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Shell_1394 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein D Shell_1618 GTPase of unknown function domain protein K06942 ychF; ribosome-binding ATPase D Shell_0167 protein of unknown function DUF402 K22469 fau-1; probable ribonuclease FAU-1 [EC:3.1.26.-] C 03016 Transfer RNA biogenesis [BR:shc03016] D Shell_1436 Ribonuclease P, Rpp29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D Shell_1614 Ribonuclease P-related protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D Shell_1615 RNase P subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D Shell_1395 RNAse P, Rpr2/Rpp21 subunit K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] D Shell_1219 beta-lactamase domain protein K00784 rnz; ribonuclease Z [EC:3.1.26.11] D Shell_1476 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D Shell_1411 protein of unknown function DUF101 K24956 ZBTB8OS; protein archease D Shell_1657 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D Shell_1643 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shell_1306 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shell_0748 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shell_0700 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shell_0933 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shell_0817 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shell_1379 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shell_1072 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shell_0472 tRNA synthetase class II (D K and N) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shell_1333 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Shell_1487 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shell_1091 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shell_0280 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shell_0053 aminoacyl-tRNA synthetase class Ia K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shell_1475 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shell_0558 transcriptional regulator, MarR family K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shell_0566 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shell_1578 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shell_0311 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Shell_0360 Protein of unknown function DUF516 K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Shell_1328 Threonyl/alanyl tRNA synthetase SAD K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D Shell_1367 RNA modification enzyme, MiaB family K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] D Shell_1201 tRNA (guanine-N(2)-)-methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] D Shell_1076 protein of unknown function Met10 K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Shell_0069 protein of unknown function Met10 K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Shell_1591 tRNA (adenine-N(1)-)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D Shell_0626 Wyosine base formation domain protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] D Shell_0359 Protein of unknown function DUF207 K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282] D Shell_0078 tRNA pseudouridine synthase D TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D Shell_0023 THUMP domain protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] D Shell_1628 Mn2+dependent serine/threonine protein kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D Shell_1629 metalloendopeptidase, glycoprotease family K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] D Shell_0833 histone acetyltransferase, ELP3 family K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311] D Shell_0256 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Shell_0781 hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1 D Shell_0559 conserved hypothetical protein K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5] D Shell_1223 CCA-adding enzyme K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] D Shell_1474 tRNA intron endonuclease, catalytic domain protein K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D Shell_1338 tRNA intron endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D Shell_1222 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Shell_0235 phosphotransferase KptA/Tpt1 K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D Shell_0712 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D Shell_0261 cysteinyl-tRNA synthetase K01884 cysS1; cysteinyl-tRNA synthetase, unknown class [EC:6.1.1.16] D Shell_0519 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D Shell_1336 Radical SAM domain protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Shell_1017 Fmu (Sun) domain protein K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-] D Shell_0163 putative RNA methylase K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256] D Shell_1218 putative RNA methylase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] D Shell_1548 protein of unknown function DUF127 K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] D Shell_0406 PP-loop domain protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15] D Shell_0796 PP-loop domain protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15] D Shell_1376 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Shell_1554 tRNA-guanine transglycosylase, various specificities K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D Shell_0358 Thiamine biosynthesis protein-like protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shell_1082 domain of unknown function DUF1743 K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22] D Shell_1343 protein of unknown function DUF699 ATPase putative K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] C 03012 Translation factors [BR:shc03012] D Shell_1363 S1 IF1 family protein K03236 EIF1A; translation initiation factor 1A D Shell_1330 translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1 D Shell_0148 translation initiation factor 2, alpha subunit K03237 EIF2S1; translation initiation factor 2 subunit 1 D Shell_1366 Translation initiation factor IF2/IF5 K03238 EIF2S2; translation initiation factor 2 subunit 2 D Shell_1636 protein synthesis factor GTP-binding protein K03242 EIF2S3; translation initiation factor 2 subunit 3 D Shell_1349 translation initiation factor eIF-5A K03263 EIF5A; translation initiation factor 5A D Shell_1638 translation initiation factor aIF-2 K03243 EIF5B; translation initiation factor 5B D Shell_1389 translation initiation factor eIF-6 K03264 EIF6; translation initiation factor 6 D Shell_1657 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D Shell_0075 translation elongation factor aEF-1 beta K03232 EEF1B; elongation factor 1-beta D Shell_1602 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2 D Shell_0161 diphthamide biosynthesis protein K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108] D Shell_1304 ATP binding protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D Shell_0255 eRF1 domain 2 protein K03265 ETF1; peptide chain release factor subunit 1 D Shell_0018 methyltransferase small K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Shell_0077 Aminoacyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] C 03110 Chaperones and folding catalysts [BR:shc03110] D Shell_1184 thermosome K22447 cct; archaeal chaperonin D Shell_1559 thermosome K22447 cct; archaeal chaperonin D Shell_1171 hypothetical protein K13993 HSP20; HSP20 family protein D Shell_0344 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Shell_1605 prefoldin, beta subunit K04798 pfdB; prefoldin beta subunit D Shell_1525 peptidylprolyl isomerase FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Shell_1186 hypothetical protein K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:shc04131] D Shell_1639 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shell_1344 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Shell_0074 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Shell_1173 AAA ATPase central domain protein K12196 VPS4; vacuolar protein-sorting-associated protein 4 D Shell_1385 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D Shell_1324 Alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D Shell_1567 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shell_1657 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha C 04121 Ubiquitin system [BR:shc04121] D Shell_0104 Ribosomal protein L40e K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D Shell_1630 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D Shell_1196 Ribosomal protein S30 K02983 RP-S30e; small subunit ribosomal protein S30e C 03051 Proteasome [BR:shc03051] D Shell_1613 proteasome endopeptidase complex, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D Shell_1527 Proteasome endopeptidase complex K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Shell_1533 Proteasome endopeptidase complex K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D Shell_1551 26S proteasome subunit P45 family K03420 psmR; proteasome regulatory subunit C 03032 DNA replication proteins [BR:shc03032] D Shell_1079 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_0153 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Shell_1459 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_0072 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Shell_1131 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Shell_1546 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shell_0147 RNA-binding protein Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3 D Shell_0643 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Shell_1579 TOPRIM domain protein K02316 dnaG; DNA primase [EC:2.7.7.101] D Shell_1234 orc1/cdc6 family replication initiation protein K10725 cdc6A; archaeal cell division control protein 6 D Shell_0001 orc1/cdc6 family replication initiation protein K10725 cdc6A; archaeal cell division control protein 6 D Shell_1229 MCM family protein K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D Shell_0152 DNA primase small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102] D Shell_0379 DNA primase, large subunit K18882 priL; DNA primase large subunit D Shell_1230 Protein of unknown function DUF1288 K09723 ginS; DNA replication factor GINS D Shell_1169 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Shell_1580 DNA polymerase Pol2 K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Shell_1596 DNA-directed DNA polymerase K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Shell_0544 DNA polymerase B region K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D Shell_1232 AAA ATPase central domain protein K04800 rfcL; replication factor C large subunit D Shell_1231 Replication factor C K04801 rfcS; replication factor C small subunit D Shell_1481 DNA topoisomerase (ATP-hydrolyzing) K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D Shell_1480 DNA topoisomerase VI, B subunit K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] D Shell_1181 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Shell_1346 reverse gyrase K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-] D Shell_1498 DNA topoisomerase (ATP-hydrolyzing) K03170 topG; reverse gyrase [EC:5.6.2.2 5.6.2.-] C 03036 Chromosome and associated proteins [BR:shc03036] D Shell_1546 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shell_1448 Protein of unknown function DUF171 K09142 SPOUT1; methyltransferase [EC:2.1.1.-] D Shell_1309 integrase family protein K04763 xerD; integrase/recombinase XerD D Shell_0599 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning C 03400 DNA repair and recombination proteins [BR:shc03400] D Shell_0773 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Shell_1073 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Shell_1079 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_0153 proliferating cell nuclear antigen PcnA K04802 PCNA; proliferating cell nuclear antigen D Shell_1459 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D Shell_0072 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Shell_1131 DNA ligase I, ATP-dependent Dnl1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Shell_0643 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Shell_1173 AAA ATPase central domain protein K12196 VPS4; vacuolar protein-sorting-associated protein 4 D Shell_1274 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Shell_1133 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Shell_1534 Deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D Shell_1625 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shell_1310 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shell_0741 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 D Shell_0744 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D Shell_1489 DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA D Shell_0670 Resolvase, Holliday junction-type K03552 hjr; holliday junction resolvase [EC:3.1.21.10] D Shell_0610 DEAD/DEAH box helicase domain protein K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D Shell_1181 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Shell_1101 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Shell_1455 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D Shell_0456 Protein of unknown function DUF650 K22585 nreA; DNA repair protein NreA C 03029 Mitochondrial biogenesis [BR:shc03029] D Shell_1436 Ribonuclease P, Rpp29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D Shell_1614 Ribonuclease P-related protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D Shell_1615 RNase P subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D Shell_1578 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shell_0700 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shell_1333 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D Shell_0817 Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shell_0599 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:shc02000] D Shell_0535 extracellular solute-binding protein family 1 K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D Shell_0534 binding-protein-dependent transport systems inner membrane component K15496 wtpB; molybdate/tungstate transport system permease protein D Shell_0533 ABC transporter related protein K15497 wtpC; molybdate/tungstate transport system ATP-binding protein [EC:7.3.2.5 7.3.2.6] D Shell_0667 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Shell_0666 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Shell_0665 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Shell_0513 ABC transporter related protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Shell_1482 ABC transporter related protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Shell_1485 extracellular solute-binding protein family 1 K17315 gtsA; glucose/mannose transport system substrate-binding protein D Shell_1484 binding-protein-dependent transport systems inner membrane component K17316 gtsB; glucose/mannose transport system permease protein D Shell_1483 binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein D Shell_0710 extracellular solute-binding protein family 1 K17237 inoE; inositol-phosphate transport system substrate-binding protein D Shell_0709 binding-protein-dependent transport systems inner membrane component K17238 inoF; inositol-phosphate transport system permease protein D Shell_0708 binding-protein-dependent transport systems inner membrane component K17239 inoG; inositol-phosphate transport system permease protein D Shell_0707 ABC transporter related protein K17240 inoK; inositol-phosphate transport system ATP-binding protein D Shell_0685 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Shell_0683 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Shell_0682 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Shell_0684 ABC transporter related protein K23537 nupA; general nucleoside transport system ATP-binding protein D Shell_0516 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Shell_0732 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D Shell_0515 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D Shell_0731 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D Shell_0514 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Shell_0730 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D Shell_1542 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shell_1541 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Shell_1540 binding-protein-dependent transport systems inner membrane component K02038 pstA; phosphate transport system permease protein D Shell_1539 ABC transporter related protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shell_1116 solute binding protein-like protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shell_0849 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shell_0459 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shell_0803 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shell_1114 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shell_0850 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shell_0460 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shell_0802 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shell_1113 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shell_0851 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shell_0461 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shell_0801 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shell_1120 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shell_0852 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shell_0462 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shell_0800 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shell_0463 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Shell_1119 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Shell_0289 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Shell_0290 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Shell_0291 ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Shell_0765 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Shell_0411 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Shell_0638 ABC transporter related protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Shell_0766 ABC transporter related protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Shell_0763 ABC-type thiamin-related transport system, permease component 1, predicted K16925 ykoE; energy-coupling factor transport system permease protein D Shell_0437 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D Shell_0436 ABC-3 protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D Shell_0438 ABC transporter related protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D Shell_1062 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shell_0705 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Shell_0651 ABC-type Na+ efflux pump permease component-like protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Shell_0751 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Shell_0453 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shell_0750 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Shell_0650 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_0399 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_0704 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_1063 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_0625 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_0082 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_0452 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_0749 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_0775 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA-like protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_0550 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shell_1009 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shell_1042 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shell_1011 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shell_1043 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shell_1044 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shell_0611 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shell_0701 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D Shell_0470 sodium/sulphate symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Shell_0391 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Shell_1008 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shell_1075 major facilitator superfamily MFS_1 K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D Shell_1401 major facilitator superfamily MFS_1 K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D Shell_0249 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Shell_1242 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Shell_1255 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Shell_1256 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Shell_0754 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shell_0600 hypothetical protein K07244 K07244; mgtE-like transporter D Shell_0807 Mg2 transporter protein CorA family protein K03284 corA; magnesium transporter D Shell_0690 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein D Shell_1327 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family D Shell_0426 protein of unknown function DUF6 transmembrane K08978 TC.BAT1; bacterial/archaeal transporter family protein D Shell_0093 protein of unknown function DUF6 transmembrane K03298 TC.DME; drug/metabolite transporter, DME family D Shell_0737 sodium/hydrogen exchanger K26730 napA; Na+:H+ antiporter D Shell_0132 sodium/hydrogen exchanger K26730 napA; Na+:H+ antiporter D Shell_0565 sodium/hydrogen exchanger K26730 napA; Na+:H+ antiporter D Shell_1019 sodium/hydrogen exchanger K26730 napA; Na+:H+ antiporter D Shell_1370 cation transporter K03498 trkH; trk/ktr system potassium uptake protein D Shell_1236 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Shell_1369 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Shell_0234 Cl-channel voltage-gated family protein K03281 clcA; chloride channel protein, CIC family D Shell_0131 Bile acid:sodium symporter K03325 ACR3; arsenite transporter D Shell_0138 Na+/H+ antiporter MnhB subunit-related protein K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D Shell_0146 NADH/Ubiquinone/plastoquinone (complex I) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D Shell_0136 cation antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D Shell_0141 multiple resistance and pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D Shell_0140 monovalent cation/proton antiporter, MnhG/PhaG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D Shell_0427 Auxin Efflux Carrier K24180 mleP; malate permease and related proteins D Shell_0761 protein of unknown function DUF125 transmembrane K22736 VIT; vacuolar iron transporter family protein D Shell_0530 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D Shell_0940 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shell_0941 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta D Shell_0824 FeoA family protein K04758 feoA; ferrous iron transport protein A D Shell_0823 small GTP-binding protein K04759 feoB; ferrous iron transport protein B D Shell_1450 AAA ATPase K25503 cedB; DNA import protein CedB D Shell_1452 hypothetical protein K25504 cedA; DNA import protein CedA D Shell_1453 hypothetical protein K25505 cedA1; DNA import protein CedA1 C 02044 Secretion system [BR:shc02044] D Shell_0978 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Shell_1478 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Shell_0977 Type II secretion system F domain protein K07333 flaJ; archaeal flagellar protein FlaJ D Shell_1477 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D Shell_1490 peptidase A24A prepilin type IV K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D Shell_1421 SecY protein K03076 secY; preprotein translocase subunit SecY D Shell_0025 GTP-binding signal recognition particle SRP54 G-domain protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shell_1386 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shell_1385 hypothetical protein K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D Shell_1205 Ribonucleoprotein complex SRP, Srp19 component K03105 SRP19; signal recognition particle subunit SRP19 C 02042 Bacterial toxins [BR:shc02042] D Shell_0085 Hyaluronidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 02022 Two-component system [BR:shc02022] D Shell_1368 hypothetical protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] C 02035 Bacterial motility proteins [BR:shc02035] D Shell_0978 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Shell_1478 type II secretion system protein E K07332 flaI; archaeal flagellar protein FlaI D Shell_0977 Type II secretion system F domain protein K07333 flaJ; archaeal flagellar protein FlaJ D Shell_1477 hypothetical protein K07333 flaJ; archaeal flagellar protein FlaJ D Shell_1490 peptidase A24A prepilin type IV K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:shc04812] D Shell_1646 protein of unknown function DUF52 K06990 MEMO1; MEMO1 family protein C 04147 Exosome [BR:shc04147] D Shell_1177 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shell_0577 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Shell_1567 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shell_0758 Peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D Shell_1657 translation elongation factor EF-1, subunit alpha K03231 EEF1A; elongation factor 1-alpha D Shell_1602 translation elongation factor aEF-2 K03234 EEF2; elongation factor 2 D Shell_0072 flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Shell_1630 Ribosomal protein S27a K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D Shell_1344 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Shell_0074 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase D Shell_1024 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shell_1536 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Shell_0404 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Shell_1505 phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Shell_1318 GHMP kinase K00849 galK; galactokinase [EC:2.7.1.6] D Shell_0551 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Shell_0642 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shell_0240 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shell_0305 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] D Shell_1566 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:shc02048] D Shell_1273 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Shell_0505 hydrolase of the HD superfamily (permuted catalytic motifs)-like protein K07016 csm1; CRISPR-associated protein Csm1 D Shell_0508 CRISPR-associated RAMP protein, Csm3 family K09002 csm3; CRISPR-associated protein Csm3 D Shell_0507 protein of unknown function DUF324 K19139 csm4; CRISPR-associated protein Csm4 D Shell_0506 CRISPR-associated RAMP protein, Csm5 family K19140 csm5; CRISPR-associated protein Csm5 D Shell_0164 CRISPR-associated protein DxTHG motif protein K19143 csx1; CRISPR-associated protein Csx1 D Shell_0445 N-6 DNA methylase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Shell_1546 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shell_0107 DNA methylase N-4/N-6 domain protein K24451 zim; modification methylase D Shell_0197 ATPase associated with various cellular activities AAA_5 K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D Shell_1589 putative transcriptional regulator, CopG/Arc/MetJ family K07746 parD1_3_4; antitoxin ParD1/3/4 D Shell_1643 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shell_0067 Nucleotide binding protein PINc K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:shc04090] C 01504 Antimicrobial resistance genes C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:shc00536] D Shell_0085 Hyaluronidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:shc00537] D Shell_0085 Hyaluronidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:shc03100] D Shell_R0048 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shell_R0018 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shell_R0038 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shell_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0039 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0017 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0032 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shell_R0045 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shell_R0006 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shell_R0025 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shell_R0002 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shell_R0029 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shell_R0033 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shell_R0011 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shell_R0020 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shell_R0034 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shell_R0012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shell_R0005 tRNA-His K14226 tRNA-His; tRNA His D Shell_R0021 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shell_R0046 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0007 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0003 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0008 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shell_R0001 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shell_R0027 tRNA-Met K14230 tRNA-Met; tRNA Met D Shell_R0040 tRNA-Met K14230 tRNA-Met; tRNA Met D Shell_R0035 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shell_R0019 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shell_R0037 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shell_R0047 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shell_R0036 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shell_R0009 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shell_R0044 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shell_R0041 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shell_R0016 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shell_R0024 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shell_R0013 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shell_R0026 tRNA-Val K14237 tRNA-Val; tRNA Val D Shell_R0014 tRNA-Val K14237 tRNA-Val; tRNA Val D Shell_R0030 tRNA-Val K14237 tRNA-Val; tRNA Val D Shell_R0004 tRNA-Val K14237 tRNA-Val; tRNA Val D Shell_R0023 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shell_R0022 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shell_R0042 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shell_R0043 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Shell_0448 (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D Shell_0449 molybdopterin dehydrogenase FAD-binding protein K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D Shell_0523 indolepyruvate ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D Shell_0524 Indolepyruvate ferredoxin oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D Shell_0843 FAD dependent oxidoreductase K17870 nox1; NADH oxidase (H2O2-forming) [EC:1.6.3.3] D Shell_0770 Desulfoferrodoxin ferrous iron-binding region K05919 dfx; superoxide reductase [EC:1.15.1.2] D Shell_0003 Radical SAM domain protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5] D Shell_1216 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shell_0100 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shell_1398 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shell_0056 Radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shell_0071 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Shell_0288 diphthine synthase K20215 dph5; diphthine synthase [EC:2.1.1.98] D Shell_1081 Deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D Shell_0236 hypothetical protein K18678 VTE5; phytol kinase [EC:2.7.1.182] D Shell_1282 CDP-alcohol phosphatidyltransferase K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D Shell_0384 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Shell_0937 thioesterase-like protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29] D Shell_0540 protein of unknown function DUF89 K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D Shell_0265 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shell_1147 protein of unknown function DUF91 K07503 nucS; endonuclease [EC:3.1.-.-] D Shell_0424 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Shell_0605 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D Shell_0084 LmbE family protein K22408 dac; N,N'-diacetylchitobiose non-reducing end deacetylase [EC:3.5.1.136] D Shell_0868 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shell_0365 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shell_1033 ATPase associated with various cellular activities AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shell_1260 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shell_1272 protein of unknown function DUF62 K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3] D Shell_0373 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Shell_0060 conserved hypothetical protein K01741 E4.2.99.18; DNA-(apurinic or apyrimidinic site) lyase [EC:4.2.99.18] D Shell_1530 RNA 3'-phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4] D Shell_1013 ATP dependent DNA ligase K07468 K07468; DNA/RNA ligase [EC:6.5.1.-] C 99981 Carbohydrate metabolism D Shell_1402 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D Shell_0680 ferredoxin K05337 fer; ferredoxin D Shell_0454 ferredoxin K05337 fer; ferredoxin D Shell_0139 hypothetical protein K14113 ehbD; energy-converting hydrogenase B subunit D D Shell_0137 NADH-ubiquinone oxidoreductase chain 4L K14114 ehbE; energy-converting hydrogenase B subunit E C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism D Shell_0988 molybdopterin-guanine dinucleotide biosynthesis protein MobB region K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D Shell_1550 transcriptional regulator, XRE family K03627 MBF1; putative transcription factor D Shell_1499 DNA-binding protein Alba K03622 ssh10b; archaea-specific DNA-binding protein D Shell_1497 Alba, DNA/RNA-binding protein K03622 ssh10b; archaea-specific DNA-binding protein D Shell_1145 Like-Sm ribonucleoprotein core K04796 RUXX; small nuclear ribonucleoprotein D Shell_1522 Like-Sm ribonucleoprotein core K04796 RUXX; small nuclear ribonucleoprotein D Shell_0271 transcriptional regulator K07743 K07743; transcriptional regulator D Shell_0262 transcriptional regulator protein-like protein K07745 K07745; transcriptional regulator C 99974 Translation D Shell_0020 Protein of unknown function DUF655 K07572 K07572; putative nucleotide binding protein D Shell_1598 beta-lactamase domain protein K07577 K07577; putative mRNA 3-end processing factor D Shell_0331 conserved hypothetical protein K07577 K07577; putative mRNA 3-end processing factor D Shell_0159 Methyltransferase-like protein protein 5-like protein K07579 K07579; putative methylase D Shell_0076 Protein of unknown function DUF1610 K07580 K07580; Zn-ribbon RNA-binding protein D Shell_1616 Protein of unknown function DUF54 K07581 K07581; RNA-binding protein C 99975 Protein processing D Shell_0326 AIR synthase related protein K04655 hypE; hydrogenase expression/formation protein HypE D Shell_1552 PUA domain containing protein K07398 K07398; conserved protein with predicted RNA binding PUA domain D Shell_0783 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor D Shell_0662 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D Shell_0200 protein of unknown function DUF1156 K07445 K07445; putative DNA methylase D Shell_1209 DNA binding domain protein, excisionase family K07450 K07450; putative resolvase D Shell_1159 TIP49 domain protein K07472 TIP49; TBP-interacting protein D Shell_0228 Translin K07477 K07477; translin D Shell_0225 transposase, IS605 OrfB family K07496 K07496; putative transposase D Shell_1239 transposase, IS605 OrfB family K07496 K07496; putative transposase D Shell_1208 transposase, IS605 OrfB family K07496 K07496; putative transposase D Shell_0302 transposase, IS605 OrfB family K07496 K07496; putative transposase D Shell_0171 transposase, IS605 OrfB family K07496 K07496; putative transposase C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Shell_0083 major facilitator superfamily MFS_1 K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D Shell_0123 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family C 99978 Cell growth C 99993 Cell motility C 99995 Signaling proteins D Shell_1224 Ser/Thr protein kinase-like protein K07176 K07176; putative serine/threonine protein kinase D Shell_1266 RecA-superfamily ATPase implicated in signal transduction-like protein K08482 kaiC; circadian clock protein KaiC D Shell_0983 putative circadian clock protein, KaiC K08482 kaiC; circadian clock protein KaiC D Shell_1392 DNA-binding TFAR19-related protein K06875 PDCD5; programmed cell death protein 5 C 99992 Structural proteins C 99994 Others D Shell_1538 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Shell_0318 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D Shell_0609 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] B B 09194 Poorly characterized C 99996 General function prediction only D Shell_0672 PilT protein domain protein K06865 K06865; ATPase D Shell_0721 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein D Shell_0949 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein D Shell_0357 t-RNA-binding domain protein K06878 K06878; tRNA-binding protein D Shell_0348 Haloacid dehalogenase domain protein hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D Shell_0621 Haloacid dehalogenase domain protein hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D Shell_0738 HAD-superfamily hydrolase, subfamily IA, variant 1 K07025 K07025; putative hydrolase of the HAD superfamily D Shell_0702 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D Shell_1084 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D Shell_0329 TatD-related deoxyribonuclease K07049 K07049; TatD-related deoxyribonuclease D Shell_0169 Sjogrens syndrome scleroderma autoantigen 1 K07143 K07143; UPF0148 protein D Shell_1128 membrane protein-like protein K08979 K08979; putative membrane protein C 99997 Function unknown D Shell_1172 protein of unknown function DUF75 K06869 K06869; uncharacterized protein D Shell_1553 protein of unknown function DUF75 K06869 K06869; uncharacterized protein D Shell_0772 serine protease-like protein K06870 K06870; uncharacterized protein D Shell_1132 serine protease-like protein K06870 K06870; uncharacterized protein D Shell_0963 metal dependent phosphohydrolase K06885 K06885; uncharacterized protein D Shell_0553 peptidase S15 K06889 K06889; uncharacterized protein D Shell_0199 protein of unknown function DUF499 K06922 K06922; uncharacterized protein D Shell_0307 protein of unknown function DUF134 K06933 K06933; uncharacterized protein D Shell_0423 protein of unknown function DUF296 K06934 K06934; uncharacterized protein D Shell_1122 Radical SAM domain protein K06935 K06935; uncharacterized protein D Shell_0370 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Shell_1020 hypothetical protein K06940 K06940; uncharacterized protein D Shell_0954 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Shell_0664 metal dependent phosphohydrolase K06950 K06950; uncharacterized protein D Shell_1123 metallophosphoesterase K06953 K06953; uncharacterized protein D Shell_0368 photosystem I assembly BtpA K06971 K06971; uncharacterized protein D Shell_0585 acetyltransferase-like protein K06975 K06975; uncharacterized protein D Shell_0434 methyltransferase-like protein K06983 K06983; uncharacterized protein D Shell_0586 hydrolase (metallo-beta-lactamase superfamily)-like protein K07022 K07022; uncharacterized protein D Shell_0832 beta-lactamase domain protein K07022 K07022; uncharacterized protein D Shell_0703 SufBD protein K07033 K07033; uncharacterized protein D Shell_1528 KH-domain/beta-lactamase-domain protein K07041 K07041; uncharacterized protein D Shell_0909 PilT protein domain protein K07064 K07064; uncharacterized protein D Shell_1111 protein of unknown function DUF35 K07068 K07068; uncharacterized protein D Shell_1582 DNA polymerase beta domain protein region K07073 K07073; uncharacterized protein D Shell_1252 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shell_0395 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shell_0343 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Shell_1138 metallophosphoesterase K07096 K07096; uncharacterized protein D Shell_0352 Icc protein-like phosphoesterase K07096 K07096; uncharacterized protein D Shell_0985 phosphoesterase DHHA1 K07097 K07097; uncharacterized protein D Shell_1037 phosphohydrolase (DHH superfamily)-like protein K07097 K07097; uncharacterized protein D Shell_0221 phosphoribosyltransferase K07101 K07101; uncharacterized protein D Shell_0032 phosphoribosyltransferase K07101 K07101; uncharacterized protein D Shell_0041 phosphoribosyltransferase K07101 K07101; uncharacterized protein D Shell_0932 transcriptional regulator protein-like protein K07108 K07108; uncharacterized protein D Shell_0058 ABC transporter related protein K07128 K07128; uncharacterized protein D Shell_1588 t-RNA-binding domain protein K07135 K07135; uncharacterized protein D Shell_0030 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein D Shell_1635 Protein of unknown function DUF652 K07158 K07158; uncharacterized protein D Shell_0739 protein of unknown function DUF763 K09003 K09003; uncharacterized protein D Shell_0002 protein of unknown function DUF99 K09120 K09120; uncharacterized protein D Shell_1141 protein of unknown function DUF82 K09122 K09122; uncharacterized protein D Shell_0277 protein of unknown function DUF355 K09129 K09129; uncharacterized protein D Shell_0270 protein of unknown function DUF167 K09131 K09131; uncharacterized protein D Shell_1140 AMMECR1 domain protein K09141 K09141; uncharacterized protein D Shell_0986 Protein of unknown function DUF429 K09147 K09147; uncharacterized protein D Shell_1365 Protein of unknown function DUF424 K09148 K09148; uncharacterized protein D Shell_0012 Protein of unknown function DUF432 K09149 K09149; uncharacterized protein D Shell_1514 Protein of unknown function DUF432 K09149 K09149; uncharacterized protein D Shell_1153 Protein of unknown function DUF460 K09150 K09150; uncharacterized protein D Shell_0439 conserved hypothetical protein K09157 K09157; uncharacterized protein D Shell_0430 conserved hypothetical protein K09163 K09163; uncharacterized protein D Shell_0306 Protein of unknown function DUF504 K09715 K09715; uncharacterized protein D Shell_0351 conserved hypothetical protein K09717 K09717; uncharacterized protein D Shell_0168 Protein of unknown function UPF0147 K09721 K09721; uncharacterized protein D Shell_0658 protein of unknown function DUF211 K09732 K09732; uncharacterized protein D Shell_1220 Protein of unknown function DUF54 K09736 K09736; uncharacterized protein D Shell_1293 Protein of unknown function DUF61 K09737 K09737; uncharacterized protein D Shell_0070 Protein of unknown function DUF371 K09738 K09738; uncharacterized protein D Shell_0157 conserved hypothetical protein K09742 K09742; uncharacterized protein D Shell_0778 Putitive phosphate transport regulator K07220 K07220; uncharacterized protein D Shell_0654 Putitive phosphate transport regulator K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 15, 2024