+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Streptococcus intermedius B196

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D SIR_0926 rnc; RNase III: ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C SIR_0711 era; GTP-binding protein Era K03595 era; GTPase C SIR_0672 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C SIR_1409 nusA; transcription elongation protein K02600 nusA; transcription termination/antitermination protein NusA C SIR_0315 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C SIR_0126 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D SIR_1257 synthase protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D SIR_1589 rsuA1; putative ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D SIR_0200 ksgA; putative dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D SIR_1296 methyltransferase protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SIR_0853 ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D SIR_1266 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D SIR_1615 RNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D SIR_0342 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D SIR_1391 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D SIR_1212 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D SIR_0415 putative hemolysin RNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D SIR_1681 rrmA; ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D SIR_1579 trmH; RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D SIR_1903 rlmH; ribosomal RNA large subunit methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D SIR_1016 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D SIR_1262 putative radical SAM enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SIR_0415 putative hemolysin RNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D SIR_1003 rumA1; putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D SIR_0380 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SIR_0123 rluD2; putative ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SIR_0569 rluD1; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SIR_0904 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C SIR_0217 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SIR_1183 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SIR_0651 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C SIR_1616 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C SIR_0926 rnc; RNase III: ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C SIR_1799 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C SIR_0439 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C SIR_1358 ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7] B GTPases C SIR_0711 era; GTP-binding protein Era K03595 era; GTPase C SIR_0203 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C SIR_0357 engA; GTP-binding protein EngA K03977 engA; GTPase C SIR_0672 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] C SIR_0761 rbgA; ribosomal biogenesis GTPase K14540 rbgA; ribosome biogenesis GTPase A C SIR_0525 hflX; putative GTP-binding protein K03665 hflX; GTPase C SIR_1464 yqeH; GTP-binding protein YqeH K06948 yqeH; 30S ribosome assembly GTPase B Other maturation factors C SIR_0781 putative tranlsation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C SIR_1614 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C SIR_1405 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C SIR_1410 hypothetical protein K09748 rimP; ribosome maturation factor RimP C SIR_1888 hypothetical protein K14761 rlbA; ribosome-associated protein C SIR_1459 hypothetical protein K09710 ybeB; ribosome-associated protein C SIR_0709 hypothetical protein K07042 ybeY; probable rRNA maturation factor C SIR_1463 hypothetical protein K07574 yhbY; RNA-binding protein C SIR_1267 yfiA; putative 30S ribosomal interface protein S30EA K05808 hpf; ribosome hibernation promoting factor C SIR_0005 ychF; translation-associated GTPase K06942 ychF; ribosome-binding ATPase C SIR_0346 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 8, 2025