+F Repair protein KO
#
DNA Repair and Recombination Proteins - Sideroxydans sp. CL21
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E SIDCL21_0369 source:FIG; ID:fig|6666666.470149.peg.369 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SIDCL21_0866 source:FIG; ID:fig|6666666.470149.peg.866 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D SIDCL21_2843 source:FIG; ID:fig|6666666.470149.peg.2843 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E SIDCL21_0369 source:FIG; ID:fig|6666666.470149.peg.369 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SIDCL21_0126 source:FIG; ID:fig|6666666.470149.peg.126 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SIDCL21_0866 source:FIG; ID:fig|6666666.470149.peg.866 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E SIDCL21_0046 source:FIG; ID:fig|6666666.470149.peg.46 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SIDCL21_3739 source:FIG; ID:fig|6666666.470149.peg.3739 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
E SIDCL21_2161 source:FIG; ID:fig|6666666.470149.peg.2161 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E SIDCL21_1691 source:FIG; ID:fig|6666666.470149.peg.1691 K03703 uvrC; excinuclease ABC subunit C
E SIDCL21_2161 source:FIG; ID:fig|6666666.470149.peg.2161 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E SIDCL21_0702 source:FIG; ID:fig|6666666.470149.peg.702 K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E SIDCL21_3776 source:FIG; ID:fig|6666666.470149.peg.3776 K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E SIDCL21_0851 source:FIG; ID:fig|6666666.470149.peg.851 K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E SIDCL21_1804 source:FIG; ID:fig|6666666.470149.peg.1804 K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E SIDCL21_1864 source:FIG; ID:fig|6666666.470149.peg.1864 K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SIDCL21_2188 source:FIG; ID:fig|6666666.470149.peg.2188 K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E SIDCL21_2161 source:FIG; ID:fig|6666666.470149.peg.2161 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E SIDCL21_2791 source:FIG; ID:fig|6666666.470149.peg.2791 K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E SIDCL21_3136 source:FIG; ID:fig|6666666.470149.peg.3136 K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SIDCL21_3139 source:FIG; ID:fig|6666666.470149.peg.3139 K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E SIDCL21_1892 source:FIG; ID:fig|6666666.470149.peg.1892 K02686 priB; primosomal replication protein N
D RecFOR pathway proteins
E SIDCL21_3136 source:FIG; ID:fig|6666666.470149.peg.3136 K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SIDCL21_3139 source:FIG; ID:fig|6666666.470149.peg.3139 K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F SIDCL21_1296 source:FIG; ID:fig|6666666.470149.peg.1296 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
E Supressor
F SIDCL21_0441 source:FIG; ID:fig|6666666.470149.peg.441 K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F SIDCL21_2161 source:FIG; ID:fig|6666666.470149.peg.2161 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F SIDCL21_1842 source:FIG; ID:fig|6666666.470149.peg.1842 K04764 ihfA; integration host factor subunit alpha
F SIDCL21_1305 source:FIG; ID:fig|6666666.470149.peg.1305 K05788 ihfB; integration host factor subunit beta
F SIDCL21_2874 source:FIG; ID:fig|6666666.470149.peg.2874 K05788 ihfB; integration host factor subunit beta
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D SIDCL21_2750 source:FIG; ID:fig|6666666.470149.peg.2750 K03502 umuC; DNA polymerase V
D SIDCL21_2749 source:FIG; ID:fig|6666666.470149.peg.2749 K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D SIDCL21_2340 source:FIG; ID:fig|6666666.470149.peg.2340 K01356 lexA; repressor LexA [EC:3.4.21.88]
D SIDCL21_2791 source:FIG; ID:fig|6666666.470149.peg.2791 K03111 ssb; single-strand DNA-binding protein
D SIDCL21_2274 source:FIG; ID:fig|6666666.470149.peg.2274 K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D SIDCL21_1855 source:FIG; ID:fig|6666666.470149.peg.1855 K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
C Modulation of nucleotide pools
D SIDCL21_2843 source:FIG; ID:fig|6666666.470149.peg.2843 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SIDCL21_0733 source:FIG; ID:fig|6666666.470149.peg.733 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024