+D GENES KO
#
KEGG Orthology (KO) - Streptococcus intermedius JTH08
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:sie00010]
D SCIM_0780 gki; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D SCIM_0133 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SCIM_1064 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SCIM_0688 fbp; firmicute fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D SCIM_0325 fbaA; fructose biphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SCIM_1699 conserved hypothetical protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SCIM_0605 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SCIM_0156 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SCIM_1504 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SCIM_1166 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SCIM_1563 conserved hypothetical protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SCIM_0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SCIM_1063 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SCIM_0685 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D SCIM_0646 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SCIM_0829 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SCIM_0062 adhE; alcohol-acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SCIM_0289 adh; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D SCIM_0052 galM; aldose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D SCIM_1027 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1092 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_0418 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SCIM_1308 family 1 glycoside hydrolase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SCIM_0516 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SCIM_0223 bglA; beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SCIM_1235 glucose-specific PTS system IIABC components K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SCIM_1566 conserved hypothetical protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
C 00020 Citrate cycle (TCA cycle) [PATH:sie00020]
D SCIM_0418 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SCIM_0646 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:sie00030]
D SCIM_0133 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SCIM_1020 gdh; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SCIM_0546 3-carboxymuconate cyclase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D SCIM_1237 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D SCIM_0146 rpe; pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D SCIM_1479 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D SCIM_0609 conserved hypothetical protein K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D SCIM_0792 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D SCIM_1027 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1092 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1035 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SCIM_0017 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SCIM_1360 keto-hydroxyglutarate-aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D SCIM_1358 PfkB family carbohydrate kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D SCIM_0325 fbaA; fructose biphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SCIM_0688 fbp; firmicute fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D SCIM_1064 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:sie00040]
D SCIM_1522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SCIM_1483 hexulose-6-phosphate synthase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D SCIM_1482 conserved hypothetical protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D SCIM_0146 rpe; pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:sie00051]
D SCIM_1315 scrK; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D SCIM_1305 pmi; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D SCIM_1064 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SCIM_0688 fbp; firmicute fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D SCIM_1088 fruB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D SCIM_0325 fbaA; fructose biphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SCIM_1699 conserved hypothetical protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SCIM_0605 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SCIM_1087 fruA; fructose specific PTS system IIABC components K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D SCIM_0049 mannose-specific PTS system IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D SCIM_0288 manL; mannose-specific PTS system EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D SCIM_0047 mannose-specific PTS system IIC component homolog K02795 manY; mannose PTS system EIIC component
D SCIM_0287 manM; mannose-specific PTS system IIC component K02795 manY; mannose PTS system EIIC component
D SCIM_1458 mannose-specific PTS system IIC component K02795 manY; mannose PTS system EIIC component
D SCIM_0048 mannose-specific PTS system IID component K02796 manZ; mannose PTS system EIID component
D SCIM_0286 manN; mannose-specific PTS system component IID K02796 manZ; mannose PTS system EIID component
C 00052 Galactose metabolism [PATH:sie00052]
D SCIM_0052 galM; aldose-1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D SCIM_0949 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D SCIM_0948 galT; galactose-1-phosphate-uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D SCIM_0668 galE2; UDP-Gal/UDP-GalNac epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SCIM_1698 conserved hypothetical protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SCIM_1522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SCIM_1027 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1092 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_0780 gki; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D SCIM_1144 conserved hypothetical protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D SCIM_0045 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D SCIM_1145 lacC; tagatose-6-phosphate kinase K00917 lacC; tagatose 6-phosphate kinase [EC:2.7.1.144]
D SCIM_1064 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SCIM_0051 lacD; tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D SCIM_1152 lacD; tagatose-1,6-bisphosphate aldolase homolog K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D SCIM_1149 conserved hypothetical protein K01819 E5.3.1.26; galactose-6-phosphate isomerase [EC:5.3.1.26]
D SCIM_1150 lacB; galactose-6-phosphate isomerase K01819 E5.3.1.26; galactose-6-phosphate isomerase [EC:5.3.1.26]
D SCIM_1140 lacG; phospho-B-galactosidase LacG K01220 E3.2.1.85; 6-phospho-beta-galactosidase [EC:3.2.1.85]
D SCIM_1142 lacF; lactose-specific PTS system IIA component K02786 lacF; lactose PTS system EIIA component [EC:2.7.1.207]
D SCIM_1141 lacE; lactose-specific PTS system IIBC component K02788 lacE; lactose PTS system EIICB component [EC:2.7.1.207]
D SCIM_1318 scrB; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D SCIM_1181 conserved hypothetical protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D SCIM_1355 PTS system IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SCIM_1460 mannose-specific PTS system IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SCIM_1353 PTS system IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D SCIM_1352 PTS system IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D SCIM_1351 N-acetylgalactosamine-specific PTS system IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D SCIM_0050 agaS; tagatose-6-phosphate ketose/aldose isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:sie00053]
D SCIM_1484 sugar-specific PTS system EII component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D SCIM_1485 ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component
D SCIM_1480 conserved hypothetical protein K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D SCIM_1483 hexulose-6-phosphate synthase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D SCIM_1482 conserved hypothetical protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
C 00500 Starch and sucrose metabolism [PATH:sie00500]
D SCIM_0073 conserved hypothetical protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SCIM_1317 scrA; sugar specific PTS system IIC components K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SCIM_1318 scrB; sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D SCIM_1181 conserved hypothetical protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D SCIM_1522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SCIM_0519 PTS system IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SCIM_0559 cellobiose-specific PTS system IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SCIM_0218 lactose/cellobiose-specific PTS system IIA subunit homolog K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SCIM_0517 sugar-specific PTS system EII component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SCIM_0560 cellobiose-specific PTS system IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SCIM_0217 ptcB; cellobiose-specific PTS system components IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SCIM_1307 cellobiose-specific PTS system IIC component homolog K02761 celB; cellobiose PTS system EIIC component
D SCIM_0942 cellobiose-specific PTS system IIC component K02761 celB; cellobiose PTS system EIIC component
D SCIM_0521 lactose/cellobiose specific PTS system IIC subunit homolog K02761 celB; cellobiose PTS system EIIC component
D SCIM_0561 cellobiose-specific PTS system IIC component K02761 celB; cellobiose PTS system EIIC component
D SCIM_0214 cellobiose-specific PTS system component IIC homolog K02761 celB; cellobiose PTS system EIIC component
D SCIM_1308 family 1 glycoside hydrolase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SCIM_0516 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SCIM_0223 bglA; beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D SCIM_1115 glgD; glycogen biosynthesis protein GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D SCIM_1116 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D SCIM_1114 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D SCIM_1117 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D SCIM_1627 malP; maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D SCIM_1113 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D SCIM_1634 type II secretory pathway pullulanase PulA glycosidase homolog K01200 pulA; pullulanase [EC:3.2.1.41]
D SCIM_0892 pullulanase K01200 pulA; pullulanase [EC:3.2.1.41]
D SCIM_0786 amy; cytoplasmic alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D SCIM_1628 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D SCIM_1235 glucose-specific PTS system IIABC components K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SCIM_1566 conserved hypothetical protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D SCIM_1234 ptsG; glucose-specific PTS system IIABC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D SCIM_1233 conserved hypothetical protein K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90]
D SCIM_0421 pttB; trehalose-specific PTS system IIABC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D SCIM_0422 dexS; alpha amylase family dextran glucosidase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D SCIM_1027 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1092 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_0780 gki; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D SCIM_0133 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SCIM_1315 scrK; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:sie00520]
D SCIM_0570 N-acetyl-beta-D-glucosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D SCIM_1235 glucose-specific PTS system IIABC components K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SCIM_0309 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D SCIM_0513 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D SCIM_1315 scrK; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D SCIM_1487 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SCIM_0997 glmM; phosphoglucomutase/phosphomannomutase family protein K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D SCIM_0476 glmU; N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D SCIM_0074 glucokinase regulator-related protein homolog K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D SCIM_0905 conserved hypothetical protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SCIM_1101 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SCIM_0978 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SCIM_0063 nanE; N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D SCIM_0069 nanH; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D SCIM_1566 conserved hypothetical protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D SCIM_0780 gki; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D SCIM_1027 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1092 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SCIM_0949 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D SCIM_0948 galT; galactose-1-phosphate-uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D SCIM_0668 galE2; UDP-Gal/UDP-GalNac epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SCIM_1698 conserved hypothetical protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SCIM_0049 mannose-specific PTS system IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D SCIM_0288 manL; mannose-specific PTS system EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D SCIM_0047 mannose-specific PTS system IIC component homolog K02795 manY; mannose PTS system EIIC component
D SCIM_0287 manM; mannose-specific PTS system IIC component K02795 manY; mannose PTS system EIIC component
D SCIM_1458 mannose-specific PTS system IIC component K02795 manY; mannose PTS system EIIC component
D SCIM_0048 mannose-specific PTS system IID component K02796 manZ; mannose PTS system EIID component
D SCIM_0286 manN; mannose-specific PTS system component IID K02796 manZ; mannose PTS system EIID component
D SCIM_0133 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SCIM_1305 pmi; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D SCIM_1115 glgD; glycogen biosynthesis protein GlgD K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D SCIM_1116 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:sie00620]
D SCIM_0646 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SCIM_0189 pflB; pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SCIM_0644 aldehyde dehydrogenase K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D SCIM_0062 adhE; alcohol-acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SCIM_0289 adh; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D SCIM_1488 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D SCIM_1030 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SCIM_1063 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SCIM_0282 accA; acetyl CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D SCIM_0278 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SCIM_0280 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SCIM_0281 accD; acetyl CoA carboxylase carboxyltransferase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D SCIM_0829 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SCIM_1423 glyoxalase family protein homolog K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D SCIM_0988 lguL; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D SCIM_0538 conserved hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D SCIM_1365 mleS; malolactic enzyme K22212 mleA; malolactic enzyme [EC:4.1.1.101]
D SCIM_0601 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SCIM_0418 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SCIM_0685 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:sie00630]
D SCIM_1685 conserved hypothetical protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D SCIM_1499 glnA; glutamine synthetase type 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SCIM_0861 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SCIM_0995 grk; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SCIM_1360 keto-hydroxyglutarate-aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
C 00640 Propanoate metabolism [PATH:sie00640]
D SCIM_1488 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D SCIM_1030 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SCIM_0189 pflB; pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SCIM_0282 accA; acetyl CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D SCIM_0278 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SCIM_0280 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SCIM_0281 accD; acetyl CoA carboxylase carboxyltransferase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D SCIM_0829 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SCIM_0564 gldA; NAD+ dependent glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
C 00650 Butanoate metabolism [PATH:sie00650]
D SCIM_0644 aldehyde dehydrogenase K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D SCIM_0062 adhE; alcohol-acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SCIM_0189 pflB; pyruvate formate-lyase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SCIM_0646 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SCIM_0186 mvaS; hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D SCIM_1130 alsS; alpha-acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SCIM_1129 aldB; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D SCIM_1277 conserved hypothetical protein K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism [PATH:sie00660]
D SCIM_1130 alsS; alpha-acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SCIM_1129 aldB; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
C 00562 Inositol phosphate metabolism [PATH:sie00562]
D SCIM_1047 conserved hypothetical protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D SCIM_1699 conserved hypothetical protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SCIM_0605 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:sie00190]
D SCIM_1109 uncA; proton-translocating ATPase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D SCIM_1107 uncD; proton-translocating ATPase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D SCIM_1108 uncG; proton-translocating ATPase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D SCIM_1110 uncH; proton-translocating ATPase delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D SCIM_1106 uncC; proton-translocating ATPase epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D SCIM_1112 uncB; proton-translocating ATPase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SCIM_1111 uncF; proton-translocating ATPase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D SCIM_0082 ntpA; V-type sodium ATPase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D SCIM_0083 ntpB; V-type sodium ATPase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D SCIM_0080 ntpC; V-type sodium ATPase subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D SCIM_0084 ntpD; V-type sodium ATPase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D SCIM_0079 ntpE; V-type sodium ATPase subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D SCIM_0081 ntpG; V-type sodium ATPase subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D SCIM_0076 conserved hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D SCIM_0077 ntpI; V-type sodium ATPase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D SCIM_0078 ntpK; V-type sodium ATPase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D SCIM_0425 ppaC; manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:sie00710]
D SCIM_1504 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SCIM_0156 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SCIM_0325 fbaA; fructose biphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SCIM_0688 fbp; firmicute fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D SCIM_1479 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D SCIM_0609 conserved hypothetical protein K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D SCIM_1699 conserved hypothetical protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SCIM_0605 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SCIM_0146 rpe; pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D SCIM_0601 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SCIM_0418 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SCIM_0685 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00720 Other carbon fixation pathways [PATH:sie00720]
D SCIM_0646 pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D SCIM_0685 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D SCIM_0601 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SCIM_0282 accA; acetyl CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D SCIM_0278 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SCIM_0280 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SCIM_0281 accD; acetyl CoA carboxylase carboxyltransferase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D SCIM_1023 fhs; formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D SCIM_1187 folD; methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D SCIM_1030 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SCIM_1488 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:sie00680]
D SCIM_0861 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SCIM_0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SCIM_0601 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SCIM_0325 fbaA; fructose biphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SCIM_0688 fbp; firmicute fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D SCIM_1064 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SCIM_1488 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D SCIM_1030 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SCIM_1166 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SCIM_1563 conserved hypothetical protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SCIM_0996 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:sie00910]
D SCIM_0206 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D SCIM_1499 glnA; glutamine synthetase type 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SCIM_0508 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:sie00920]
D SCIM_1135 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D SCIM_1382 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SCIM_0390 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:sie00061]
D SCIM_0282 accA; acetyl CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D SCIM_0278 accB; acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SCIM_0280 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D SCIM_0281 accD; acetyl CoA carboxylase carboxyltransferase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D SCIM_0275 fabD; malonyl-CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SCIM_0273 fabH; 3-oxoacyl-(acyl-carrier-protein) syntase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SCIM_0277 fabF; 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SCIM_0472 fabG; 3-ketoacyl-(acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SCIM_0276 fabG; 3-ketoacyl-(acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SCIM_0279 fabZ; (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SCIM_0274 fabK; enoyl-acyl carrier protein reductase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D SCIM_0271 phaB; enoyl-CoA hydratase K18474 fabM; trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:5.3.3.14]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D SCIM_0062 adhE; alcohol-acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SCIM_0289 adh; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:sie00561]
D SCIM_0995 grk; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SCIM_0564 gldA; NAD+ dependent glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D SCIM_0134 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D SCIM_0020 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D SCIM_0823 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SCIM_0583 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D SCIM_0893 sphingosine kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D SCIM_0673 family 1 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D SCIM_0672 cpoA; glycosyltransferase K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208]
D SCIM_0613 phosphoglycerol transferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
C 00564 Glycerophospholipid metabolism [PATH:sie00564]
D SCIM_1521 gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D SCIM_0823 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SCIM_0583 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D SCIM_0893 sphingosine kinase K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D SCIM_0173 glycerophosphoryl diester phosphodiesterase family protein homolog K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D SCIM_0240 hypothetical protein K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D SCIM_1476 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D SCIM_1690 pgsA; CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D SCIM_1588 cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:sie00600]
D SCIM_1144 conserved hypothetical protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D SCIM_0012 nanA; sialidase A precursor K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D SCIM_0570 N-acetyl-beta-D-glucosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:sie00230]
D SCIM_0477 MutT/nudix family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D SCIM_1027 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1092 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1035 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SCIM_0017 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SCIM_0024 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D SCIM_0033 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D SCIM_0026 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D SCIM_0022 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D SCIM_0025 purM; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D SCIM_0036 purK; phosphoribosylaminoimidazole carboxylase II K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D SCIM_0035 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D SCIM_0021 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D SCIM_0043 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D SCIM_0028 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SCIM_1094 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D SCIM_0610 purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SCIM_0611 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SCIM_0010 hpt; hypoxanthine guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D SCIM_1696 guaB; inositol-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D SCIM_0728 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SCIM_1212 conserved hypothetical protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D SCIM_0854 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D SCIM_0865 guaA; bifunctional GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D SCIM_0853 guanosine 5'-monophosphate oxidoreductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D SCIM_0367 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D SCIM_0589 nrdE; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SCIM_0587 nrdF; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SCIM_1586 anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D SCIM_1432 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D SCIM_1033 GTP pyrophosphokinase K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D SCIM_0121 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SCIM_1534 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D SCIM_0508 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:sie00240]
D SCIM_0779 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SCIM_0778 pyrA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SCIM_0777 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D SCIM_0907 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D SCIM_0937 pyrD; dihydroorotate dehydrogenase B K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D SCIM_0938 pyrK; dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D SCIM_0207 pyrD; dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D SCIM_0935 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D SCIM_0936 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D SCIM_0489 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D SCIM_0728 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SCIM_1328 CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D SCIM_0992 infC; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D SCIM_0984 udK; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D SCIM_1557 conserved hypothetical protein K00876 udk; uridine kinase [EC:2.7.1.48]
D SCIM_1662 conserved hypothetical protein K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D SCIM_0434 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D SCIM_0775 pyrR; pyrimidine operon transcriptional attenuation protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D SCIM_0791 pdp; pyrimidine nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D SCIM_0793 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D SCIM_1586 anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D SCIM_0589 nrdE; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SCIM_0587 nrdF; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SCIM_0820 cytidine and deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D SCIM_0443 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D SCIM_1519 dutA; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SCIM_0857 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D SCIM_0708 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D SCIM_1245 short chain dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:sie00250]
D SCIM_0039 amino acid recemase homolog K01779 racD; aspartate racemase [EC:5.1.1.13]
D SCIM_1289 ansB; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D SCIM_0804 aspB; aspartate aminotransferase K22457 E2.6.1.14; asparagine---oxo-acid transaminase [EC:2.6.1.14]
D SCIM_1285 aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SCIM_0931 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SCIM_0121 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SCIM_0043 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D SCIM_0777 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D SCIM_0206 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D SCIM_1499 glnA; glutamine synthetase type 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SCIM_0779 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SCIM_0778 pyrA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SCIM_1487 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SCIM_0024 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:sie00260]
D SCIM_0270 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SCIM_0972 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SCIM_0945 thrA; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D SCIM_0944 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D SCIM_0085 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D SCIM_0861 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SCIM_0995 grk; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SCIM_1166 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SCIM_1563 conserved hypothetical protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SCIM_0996 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D SCIM_1245 short chain dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D SCIM_1683 sdaB; iron-sulfur-dependent L-serine dehydratase beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D SCIM_1684 sdaA; iron-sulfur-dependent L-serine dehydratase alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00270 Cysteine and methionine metabolism [PATH:sie00270]
D SCIM_1382 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SCIM_0390 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D SCIM_0955 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SCIM_0431 bC-S lyase homolog K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SCIM_0238 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D SCIM_0906 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D SCIM_0479 pfs; 5'-methylthioadenosine S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D SCIM_0209 trzA; TRZ/ATZ family hydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D SCIM_0958 cGMP-specific phosphodiesterase K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D SCIM_0365 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D SCIM_0270 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SCIM_0972 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SCIM_0945 thrA; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D SCIM_0826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SCIM_0829 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SCIM_1683 sdaB; iron-sulfur-dependent L-serine dehydratase beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D SCIM_1684 sdaA; iron-sulfur-dependent L-serine dehydratase alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00280 Valine, leucine and isoleucine degradation [PATH:sie00280]
D SCIM_0826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SCIM_0186 mvaS; hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:sie00290]
D SCIM_1130 alsS; alpha-acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SCIM_0826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SCIM_1285 aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
C 00300 Lysine biosynthesis [PATH:sie00300]
D SCIM_0945 thrA; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D SCIM_0270 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SCIM_0972 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SCIM_0971 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D SCIM_1084 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D SCIM_1515 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D SCIM_1255 M20/M25/M40 family peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D SCIM_1214 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D SCIM_0018 araT; aromatic amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-]
D SCIM_1514 hipO; aminoacylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
D SCIM_1162 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
C 00220 Arginine biosynthesis [PATH:sie00220]
D SCIM_0507 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D SCIM_0506 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D SCIM_1499 glnA; glutamine synthetase type 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SCIM_0779 carB; carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SCIM_0778 pyrA; carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SCIM_0508 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D SCIM_0206 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D SCIM_1285 aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SCIM_0108 GNAT family acetyltransferase homolog K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1]
C 00330 Arginine and proline metabolism
C 00340 Histidine metabolism
D SCIM_0810 conserved hypothetical protein K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D SCIM_0226 histidinol phosphatase or related hydrolase of the PHP family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
C 00350 Tyrosine metabolism
D SCIM_0062 adhE; alcohol-acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SCIM_0289 adh; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00360 Phenylalanine metabolism
C 00380 Tryptophan metabolism
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:sie00400]
D SCIM_1294 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SCIM_0617 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D SCIM_0615 aroD; 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D SCIM_0624 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D SCIM_0623 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D SCIM_0618 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D SCIM_0621 tyrA; prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D SCIM_0625 pheA; prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism [PATH:sie00430]
D SCIM_0931 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SCIM_1030 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SCIM_1488 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:sie00450]
D SCIM_0955 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SCIM_0431 bC-S lyase homolog K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SCIM_0238 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D SCIM_0344 nifS; class-V aminotransferase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D SCIM_0350 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D SCIM_0454 metS; methionine-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:sie00460]
D SCIM_1289 ansB; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D SCIM_0861 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:sie00470]
D SCIM_1292 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D SCIM_1163 ddlA; D-Ala-D-Ala ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SCIM_1659 dltA; D-alanine-D-alanyl carrier protein ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SCIM_1213 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D SCIM_0407 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SCIM_0039 amino acid recemase homolog K01779 racD; aspartate racemase [EC:5.1.1.13]
D SCIM_1214 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:sie00480]
D SCIM_1090 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SCIM_1076 glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D SCIM_1237 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D SCIM_1020 gdh; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SCIM_1363 basA; glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:sie00511]
D SCIM_0012 nanA; sialidase A precursor K01186 NEU1; sialidase-1 [EC:3.2.1.18]
D SCIM_1144 conserved hypothetical protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D SCIM_0570 N-acetyl-beta-D-glucosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D SCIM_0568 conserved hypothetical protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:sie00542]
D SCIM_0341 rgpG; N-acetylglycosaminyl transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:sie00541]
D SCIM_1522 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SCIM_0668 galE2; UDP-Gal/UDP-GalNac epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SCIM_1698 conserved hypothetical protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SCIM_0665 rmlA; glucose-1-phosphate thymidylytransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SCIM_0667 rmlB; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SCIM_0666 rmlC; dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SCIM_0654 dTDP-4-keto-L-rhamnose reductase RmlD K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SCIM_1305 pmi; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D SCIM_0476 glmU; N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D SCIM_1578 Cps9E homolog K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00550 Peptidoglycan biosynthesis [PATH:sie00550]
D SCIM_0905 conserved hypothetical protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SCIM_1101 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SCIM_0978 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SCIM_1224 murC; UDP-N-acetylmuramate-L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D SCIM_0407 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SCIM_1163 ddlA; D-Ala-D-Ala ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SCIM_1162 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D SCIM_0926 dgk; diacylglycerol kinase K00887 dgkA; undecaprenol kinase [EC:2.7.1.66]
D SCIM_1477 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D SCIM_0339 bacA; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SCIM_1201 conserved hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SCIM_0321 mraY; phospho-N-acetylmuramoyl pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SCIM_0408 murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D SCIM_0357 pbp1a; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SCIM_0099 pbp2A; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D SCIM_0346 pbp3; penicillin-binding protein 3 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SCIM_1344 D-alanyl-D-alanine carboxypeptidase homolog K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D SCIM_0429 murE; UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase K05362 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [EC:6.3.2.7]
D SCIM_1000 Mur ligase family protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D SCIM_1001 cobQ; glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D SCIM_0530 murM; peptidoglycan branched peptide synthesis protein K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10]
D SCIM_0529 conserved hypothetical protein K12554 murN; alanine adding enzyme [EC:2.3.2.-]
D SCIM_1509 pbp1b; penicillin-binding protein 1B K03693 pbp1b; penicillin-binding protein 1B
D SCIM_1165 pbp2b; penicillin-binding protein 2B K00687 pbp2B; penicillin-binding protein 2B
D SCIM_0320 pbpX; penicillin-binding protein 2X homolog K12556 pbp2X; penicillin-binding protein 2X
C 00552 Teichoic acid biosynthesis [PATH:sie00552]
D SCIM_0339 bacA; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SCIM_1201 conserved hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SCIM_0341 rgpG; N-acetylglycosaminyl transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D SCIM_1659 dltA; D-alanine-D-alanyl carrier protein ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SCIM_1658 dltB; D-alanyl transfer protein K03739 dltB; membrane protein involved in D-alanine export
D SCIM_1657 dltD; undecaprenol-phosphate-poly-(glycerophosphate subunit) D-alanine transfer protein K03740 dltD; D-alanine transfer protein
D SCIM_0295 lytR; transcriptional attenuator LytR K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D SCIM_0626 transcriptional attenuator LytR K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D SCIM_1582 transcriptional regulatory protein Wzg homolog K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D SCIM_0613 phosphoglycerol transferase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D SCIM_0673 family 1 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D SCIM_1578 Cps9E homolog K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:sie00543]
D SCIM_0341 rgpG; N-acetylglycosaminyl transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D SCIM_1382 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:sie00730]
D SCIM_1036 pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCIM_0689 class-V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCIM_0690 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SCIM_0145 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D SCIM_0147 thiamine pyrophosphokinase homolog K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D SCIM_1534 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:sie00740]
D SCIM_0290 HAD superfamily hydrolase K21064 ycsE; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104]
D SCIM_1050 mreA; FAD synthase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D SCIM_0477 MutT/nudix family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:sie00750]
D SCIM_1333 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D SCIM_0085 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:sie00760]
D SCIM_0354 pncB; nicotinate phosphoribosyltransferase subgroup A K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D SCIM_0610 purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SCIM_0611 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SCIM_1271 nadD; nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D SCIM_0355 nadE; NH3-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D SCIM_0815 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D SCIM_1032 ppnK; inorganic polyphosphate K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:sie00770]
D SCIM_1130 alsS; alpha-acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SCIM_0895 2-dehydropantoate 2-reductase homolog K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D SCIM_0789 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D SCIM_1024 phosphpantothenate-cystein ligase homolog K21977 coaB; phosphopantothenate---cysteine ligase (CTP) [EC:6.3.2.5]
D SCIM_1025 dfp; Dfp-like protein K01598 PPCDC; phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36]
D SCIM_0396 kdtB; phosphopantetheine adenyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D SCIM_0918 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D SCIM_1293 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D SCIM_1445 conserved hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D SCIM_0826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:sie00780]
D SCIM_0277 fabF; 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SCIM_0472 fabG; 3-ketoacyl-(acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SCIM_0276 fabG; 3-ketoacyl-(acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SCIM_0279 fabZ; (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SCIM_0951 birA1; biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:sie00790]
D SCIM_0709 dhfr; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D SCIM_1472 dihydrofolate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D SCIM_1590 dihydrofolate synthetase homolog K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
C 00670 One carbon pool by folate [PATH:sie00670]
D SCIM_0709 dhfr; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D SCIM_1023 fhs; formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D SCIM_1187 folD; methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D SCIM_0861 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SCIM_0026 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D SCIM_0028 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SCIM_0370 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D SCIM_0708 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D SCIM_1513 5-formyltetrahydrofolate cyclo-ligase homolog K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:sie00860]
D SCIM_0982 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:sie00900]
D SCIM_0186 mvaS; hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D SCIM_0185 mvaA; 3-hydroxy-3-methylglutaryl-coenzyme A reductase homolog K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88]
D SCIM_0181 mvaK1; mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D SCIM_0183 phosphomevalonate kinase homolog K00938 E2.7.4.2; phosphomevalonate kinase [EC:2.7.4.2]
D SCIM_0182 mvaD; diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33]
D SCIM_0184 fni; isopentenyl pyrophosphate isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D SCIM_1177 ispA; farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D SCIM_1477 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D SCIM_1479 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:sie00523]
D SCIM_0665 rmlA; glucose-1-phosphate thymidylytransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SCIM_0667 rmlB; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SCIM_0666 rmlC; dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SCIM_0654 dTDP-4-keto-L-rhamnose reductase RmlD K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:sie01054]
D SCIM_0039 amino acid recemase homolog K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D SCIM_0667 rmlB; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:sie00261]
D SCIM_0270 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SCIM_0972 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SCIM_0971 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D SCIM_1084 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:sie00521]
D SCIM_0780 gki; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D SCIM_1027 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1092 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SCIM_1047 conserved hypothetical protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D SCIM_0665 rmlA; glucose-1-phosphate thymidylytransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SCIM_0667 rmlB; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SCIM_0666 rmlC; dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SCIM_0654 dTDP-4-keto-L-rhamnose reductase RmlD K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D SCIM_0780 gki; glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:sie00525]
D SCIM_0665 rmlA; glucose-1-phosphate thymidylytransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SCIM_0667 rmlB; dTDP-glucose-4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis
D SCIM_0621 tyrA; prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D SCIM_0275 fabD; malonyl-CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SCIM_0472 fabG; 3-ketoacyl-(acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SCIM_0276 fabG; 3-ketoacyl-(acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites
D SCIM_0906 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:sie00625]
D SCIM_0289 adh; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D SCIM_0062 adhE; alcohol-acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:sie00626]
D SCIM_0289 adh; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D SCIM_0062 adhE; alcohol-acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:sie03020]
D SCIM_1506 rpoB; DNA-directed RNA polymerase I beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SCIM_1505 rpoC; DNA-directed RNA polymerase I beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SCIM_1529 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SCIM_0368 rpoZ; DNA-directed RNA polymerase omega subunit homolog K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SCIM_1329 rpoE; DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:sie03010]
D SCIM_0827 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D SCIM_0103 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D SCIM_1549 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D SCIM_1675 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D SCIM_1538 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D SCIM_0257 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D SCIM_0152 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D SCIM_1541 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D SCIM_1372 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D SCIM_1556 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D SCIM_1530 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D SCIM_0151 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D SCIM_1531 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D SCIM_1542 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D SCIM_1386 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D SCIM_0891 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D SCIM_1546 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D SCIM_0259 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D SCIM_1551 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D SCIM_0788 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D SCIM_0880 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D SCIM_0488 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D SCIM_1552 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D SCIM_1555 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D SCIM_1554 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D SCIM_1543 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D SCIM_1540 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D SCIM_0967 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D SCIM_1678 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D SCIM_0968 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D SCIM_0487 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D SCIM_1373 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D SCIM_1545 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D SCIM_1536 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D SCIM_1548 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D SCIM_1528 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D SCIM_1539 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D SCIM_0781 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D SCIM_0989 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D SCIM_0693 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D SCIM_1550 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D SCIM_1553 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D SCIM_1544 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D SCIM_0695 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D SCIM_0328 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D SCIM_1547 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D SCIM_1537 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D SCIM_1136 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D SCIM_1638 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D SCIM_0139 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D SCIM_0990 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D SCIM_1532 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D SCIM_rRNA01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA12 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA09 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA11 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA08 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA03 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA10 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA06 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA07 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:sie00970]
D SCIM_tRNA01 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SCIM_tRNA22 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SCIM_tRNA43 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SCIM_tRNA64 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SCIM_tRNA67 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA09 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA34 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA56 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA35 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA27 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA30 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA23 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SCIM_tRNA65 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SCIM_tRNA03 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SCIM_tRNA41 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SCIM_tRNA62 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SCIM_tRNA19 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SCIM_tRNA29 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SCIM_tRNA46 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SCIM_tRNA66 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SCIM_tRNA07 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SCIM_tRNA37 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SCIM_tRNA58 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SCIM_tRNA16 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SCIM_tRNA47 tRNA-His K14226 tRNA-His; tRNA His
D SCIM_tRNA17 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SCIM_tRNA45 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA25 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA05 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA60 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA39 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA24 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA08 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA57 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA36 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA21 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA04 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SCIM_tRNA40 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SCIM_tRNA61 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SCIM_tRNA44 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SCIM_tRNA14 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA51 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA11 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA54 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA12 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA53 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA15 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SCIM_tRNA50 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SCIM_tRNA10 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SCIM_tRNA33 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SCIM_tRNA55 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SCIM_tRNA13 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA52 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA18 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA20 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA32 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA06 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA59 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA38 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA26 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA31 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA48 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D SCIM_tRNA49 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SCIM_tRNA28 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SCIM_tRNA02 tRNA-Val K14237 tRNA-Val; tRNA Val
D SCIM_tRNA63 tRNA-Val K14237 tRNA-Val; tRNA Val
D SCIM_tRNA42 tRNA-Val K14237 tRNA-Val; tRNA Val
D SCIM_1516 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D SCIM_1279 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D SCIM_1278 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D SCIM_1280 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D SCIM_0527 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SCIM_1636 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SCIM_1281 aspartyl-tRNA synthetase 1 K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SCIM_0806 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SCIM_0314 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SCIM_0315 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SCIM_0550 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SCIM_0284 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SCIM_1379 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SCIM_0454 metS; methionine-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SCIM_0370 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D SCIM_0389 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SCIM_1404 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SCIM_0416 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SCIM_0578 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SCIM_1624 argS; class Ic arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SCIM_1474 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SCIM_1637 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SCIM_1081 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SCIM_1079 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SCIM_1510 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SCIM_1697 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:sie03060]
D SCIM_1535 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D SCIM_0100 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D SCIM_0916 secG; preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D SCIM_1350 preprotein translocase YajC subunit K03210 yajC; preprotein translocase subunit YajC
D SCIM_1478 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D SCIM_1218 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SCIM_0136 SpoIIIJ family protein homolog K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SCIM_1295 secA; preprotein translocase SecA ATPase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SCIM_0868 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SCIM_0683 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D SCIM_1062 sip; signal peptidase I homlogue K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SCIM_0192 signal peptidase I homolog K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SCIM_0700 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:sie04122]
D SCIM_1036 pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCIM_0689 class-V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCIM_1681 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SCIM_0690 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:sie03018]
D SCIM_0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SCIM_1383 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D SCIM_0915 vacB; VacB/Rnb family exoribonuclease K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SCIM_1153 rheB; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SCIM_0366 metal dependent phosphohydrase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D SCIM_1006 metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D SCIM_0157 metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D SCIM_1064 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SCIM_1337 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SCIM_1454 groEL; chaperonin large subunit GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:sie03030]
D SCIM_1065 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SCIM_1401 polC; DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SCIM_0444 DNA polymerase III delta' subunit homolog K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SCIM_0492 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SCIM_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SCIM_1677 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D SCIM_0834 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D SCIM_1465 ssb2; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0258 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0762 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0783 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0878 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D SCIM_0193 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D SCIM_1562 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SCIM_0894 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:sie03410]
D SCIM_0449 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D SCIM_0909 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D SCIM_1029 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D SCIM_1653 conserved hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D SCIM_0919 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D SCIM_1600 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D SCIM_0451 exodeoxyribonuclease homolog K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D SCIM_1562 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SCIM_1066 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SCIM_0894 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:sie03420]
D SCIM_0006 trcF; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D SCIM_0263 uvrA; excinuclease ATPase subunitA K03701 uvrA; excinuclease ABC subunit A
D SCIM_0719 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D SCIM_0591 uvrC; excinuclease complex nuclease subunit C K03703 uvrC; excinuclease ABC subunit C
D SCIM_1060 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SCIM_1562 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SCIM_0894 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:sie03430]
D SCIM_1622 hexA; DNA mismatch repair protein HexA K03555 mutS; DNA mismatch repair protein MutS
D SCIM_0196 mutS2; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D SCIM_1604 hexB; DNA mismatch repair protein HexB K03572 mutL; DNA mismatch repair protein MutL
D SCIM_1060 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SCIM_1178 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D SCIM_1066 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SCIM_1465 ssb2; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0258 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0762 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0783 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_1065 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SCIM_1401 polC; DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SCIM_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SCIM_0492 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SCIM_0444 DNA polymerase III delta' subunit homolog K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SCIM_0894 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SCIM_0737 methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:sie03440]
D SCIM_1066 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SCIM_1465 ssb2; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0258 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0762 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0783 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_1695 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D SCIM_0019 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D SCIM_1164 recR; recombination protein RecR K06187 recR; recombination protein RecR
D SCIM_1596 recA; recombinase A K03553 recA; recombination protein RecA
D SCIM_1562 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SCIM_1601 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D SCIM_0054 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D SCIM_1290 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SCIM_0191 RecD/TraA family helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D SCIM_1065 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SCIM_1401 polC; DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SCIM_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SCIM_0492 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SCIM_0444 DNA polymerase III delta' subunit homolog K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SCIM_0369 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:sie03250]
D SCIM_0482 peptidyl-prolyl cis-trans isomerase homolog K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:sie02010]
D SCIM_0974 potD; spermidine/putrescine ABC transporter K11069 potD; spermidine/putrescine transport system substrate-binding protein
D SCIM_0975 potC; spermidine/putrescine ABC transporter membrane-spanning permease K11070 potC; spermidine/putrescine transport system permease protein
D SCIM_0976 potB; spermidine/putrescine ABC transporter membrane-spanning permease K11071 potB; spermidine/putrescine transport system permease protein
D SCIM_0977 potA; spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D SCIM_0596 glycine betaine transport system permease protein homolog K05845 opuC; osmoprotectant transport system substrate-binding protein
D SCIM_0597 glycine betaine transport ATP-binding protein homolog K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D SCIM_1376 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D SCIM_1629 malE; maltose/maltodextrin ABC transporter substrate binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D SCIM_1630 malF; maltodextrin ABC transporter permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D SCIM_1631 malG; maltodextrin ABC transporter membrane-spanning protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D SCIM_0573 ABC sugar transporter solute binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D SCIM_0571 ABC sugar transporter permease protein homolog K17319 lplB; putative aldouronate transport system permease protein
D SCIM_0572 ABC sugar transporter membrane spanning permease K17320 lplC; putative aldouronate transport system permease protein
D SCIM_0794 lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D SCIM_0796 ABC transporter membrane-spanning permease K23535 nupB; general nucleoside transport system permease protein
D SCIM_0797 conserved hypothetical protein K23536 nupC; general nucleoside transport system permease protein
D SCIM_0795 sugar ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D SCIM_1464 rbsB; periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D SCIM_1045 pstS; ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D SCIM_1044 pstC1; ABC transporter membrane-spanning permease-phosphate transport K02037 pstC; phosphate transport system permease protein
D SCIM_1043 pstC; ABC transporter membrane-spanning permease-phosphate transport K02038 pstA; phosphate transport system permease protein
D SCIM_1041 pstB1; phosphate import ATP-binding protein pstB 1 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SCIM_1042 pstB2; phosphate import ATP-binding protein pstB 2 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SCIM_0718 glnP; ABC transporter membrane spanning permease-glutamine transport K10036 glnH; glutamine transport system substrate-binding protein
D SCIM_0717 glnQ; ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D SCIM_1257 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D SCIM_0348 amino acid ABC transporter permease protein K10009 tcyB; L-cystine transport system permease protein
D SCIM_0349 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D SCIM_0337 amino acid ABC transporter amino acid binding protein K17073 lysX1; putative lysine transport system substrate-binding protein
D SCIM_0336 amino acid ABC transporter ATP-binding protein K17076 lysY; putative lysine transport system ATP-binding protein
D SCIM_0436 branched-chain amino acid ABC transporter amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D SCIM_0437 branched-chain amino acid ABC transporter permease protein K01997 livH; branched-chain amino acid transport system permease protein
D SCIM_0438 branched-chain amino acid ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein
D SCIM_0439 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D SCIM_0440 branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D SCIM_1256 lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D SCIM_1253 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D SCIM_1254 ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D SCIM_0322 aliB; ABC-type oligopeptide transporter K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1326 oligopeptide ABC transporter oligopeptide-binding protein AmiA K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1325 aliA; oligopeptide ABC transporter oligopeptide-binding protein AliA K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1324 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D SCIM_1323 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D SCIM_1322 oligopeptide ABC transporter ATP-binding protein AmiE K15583 oppD; oligopeptide transport system ATP-binding protein
D SCIM_1321 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D SCIM_0962 lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D SCIM_0095 adcA; zinc ABC transporter zinc-binding lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D SCIM_0094 adcB; zinc ABC transporter permease protein K09816 znuB; zinc transport system permease protein
D SCIM_0093 adcC; zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D SCIM_1429 manganese/zinc ABC transporter substrate-binding lipoprotein precursor K19971 psaA; manganese/zinc transport system substrate-binding protein
D SCIM_1428 ABC-type Mn2+/Zn2+ transport systems permease component K19972 psaC; manganese/zinc transport system permease protein
D SCIM_1427 ABC transporter ATP-binding protein K10830 psaB; manganese/zinc transport system ATP-binding protein [EC:7.2.2.5]
D SCIM_1077 conserved hypothetical protein K03523 bioY; biotin transport system substrate-specific component
D SCIM_1246 cobalt transporter K16785 ecfT; energy-coupling factor transport system permease protein
D SCIM_1687 ABC transporter membrane-spanning permease K16785 ecfT; energy-coupling factor transport system permease protein
D SCIM_0235 conserved hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D SCIM_1689 ABC transporter ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SCIM_1688 ABC transporter ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SCIM_0462 ABC transporter homolog K11051 cylB; multidrug/hemolysin transport system permease protein
D SCIM_0461 ABC-type multidrug transport system ATPase component homolog K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D SCIM_0467 ABC-type antimicrobial peptide transport system permease component homolog K19084 braE; bacitracin transport system permease protein
D SCIM_0460 ABC-type bacitracin resistance protein permease component homolog K19084 braE; bacitracin transport system permease protein
D SCIM_0466 ABC-type antimicrobial peptide transport system ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D SCIM_0459 ABC-type bacitracin resistance protein ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D SCIM_0537 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D SCIM_0536 ftsE; cell division ABC transporter ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SCIM_0127 conserved hypothetical protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D SCIM_1057 ABC-type multidrug transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D SCIM_0128 conserved hypothetical protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D SCIM_1056 ABC-type multidrug transporter K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D SCIM_0885 ABC transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_0884 ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_0929 ABC transporter homolog K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SCIM_0928 ABC transporter homolog K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SCIM_1099 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_0714 multidrug ABC transporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_1311 ABC multidrug transporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_1098 ABC transporter permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_1310 ABC multidrug transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_0715 multidrug ABC transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_0495 bacteriocin processing peptidase K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
C 02060 Phosphotransferase system (PTS) [PATH:sie02060]
D SCIM_0590 phosphoenolpyruvate/sugar-specific PTS system enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D SCIM_1235 glucose-specific PTS system IIABC components K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SCIM_1566 conserved hypothetical protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D SCIM_1234 ptsG; glucose-specific PTS system IIABC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D SCIM_0073 conserved hypothetical protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SCIM_1317 scrA; sugar specific PTS system IIC components K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SCIM_0421 pttB; trehalose-specific PTS system IIABC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D SCIM_1142 lacF; lactose-specific PTS system IIA component K02786 lacF; lactose PTS system EIIA component [EC:2.7.1.207]
D SCIM_1141 lacE; lactose-specific PTS system IIBC component K02788 lacE; lactose PTS system EIICB component [EC:2.7.1.207]
D SCIM_0519 PTS system IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SCIM_0559 cellobiose-specific PTS system IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SCIM_0218 lactose/cellobiose-specific PTS system IIA subunit homolog K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SCIM_0517 sugar-specific PTS system EII component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SCIM_0560 cellobiose-specific PTS system IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SCIM_0217 ptcB; cellobiose-specific PTS system components IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SCIM_1307 cellobiose-specific PTS system IIC component homolog K02761 celB; cellobiose PTS system EIIC component
D SCIM_0942 cellobiose-specific PTS system IIC component K02761 celB; cellobiose PTS system EIIC component
D SCIM_0521 lactose/cellobiose specific PTS system IIC subunit homolog K02761 celB; cellobiose PTS system EIIC component
D SCIM_0561 cellobiose-specific PTS system IIC component K02761 celB; cellobiose PTS system EIIC component
D SCIM_0214 cellobiose-specific PTS system component IIC homolog K02761 celB; cellobiose PTS system EIIC component
D SCIM_0049 mannose-specific PTS system IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D SCIM_0288 manL; mannose-specific PTS system EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D SCIM_0047 mannose-specific PTS system IIC component homolog K02795 manY; mannose PTS system EIIC component
D SCIM_0287 manM; mannose-specific PTS system IIC component K02795 manY; mannose PTS system EIIC component
D SCIM_1458 mannose-specific PTS system IIC component K02795 manY; mannose PTS system EIIC component
D SCIM_0048 mannose-specific PTS system IID component K02796 manZ; mannose PTS system EIID component
D SCIM_0286 manN; mannose-specific PTS system component IID K02796 manZ; mannose PTS system EIID component
D SCIM_1355 PTS system IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SCIM_1460 mannose-specific PTS system IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SCIM_1353 PTS system IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D SCIM_1352 PTS system IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D SCIM_1351 N-acetylgalactosamine-specific PTS system IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D SCIM_1148 sugar-specific PTS system EII component K20112 gatA; galactose PTS system EIIA component [EC:2.7.1.204]
D SCIM_1147 galactitol-specific PTS system IIB component K20113 gatB; galactose PTS system EIIB component [EC:2.7.1.204]
D SCIM_1146 sugar-specific PTS system EII component K20114 gatC; galactose PTS system EIIC component
D SCIM_1484 sugar-specific PTS system EII component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D SCIM_1485 ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component
D SCIM_1087 fruA; fructose specific PTS system IIABC components K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D SCIM_1088 fruB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:sie03070]
D SCIM_0100 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D SCIM_0916 secG; preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D SCIM_1535 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D SCIM_1350 preprotein translocase YajC subunit K03210 yajC; preprotein translocase subunit YajC
D SCIM_1478 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D SCIM_1218 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SCIM_0136 SpoIIIJ family protein homolog K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SCIM_1295 secA; preprotein translocase SecA ATPase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SCIM_0683 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D SCIM_0868 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:sie02020]
D SCIM_1045 pstS; ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D SCIM_1706 degP; serine protease DegP K04771 degP; serine protease Do [EC:3.4.21.107]
D SCIM_0676 sensory box sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D SCIM_0675 two-component response transcriptional regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D SCIM_0001 dnaA; chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein
D SCIM_1568 sensor histidine kinase homolog K10681 saeS; two-component system, OmpR family, sensor histidine kinase SaeS [EC:2.7.13.3]
D SCIM_1569 DNA-binding response regulator K10682 saeR; two-component system, OmpR family, response regulator SaeR
D SCIM_0467 ABC-type antimicrobial peptide transport system permease component homolog K19084 braE; bacitracin transport system permease protein
D SCIM_0460 ABC-type bacitracin resistance protein permease component homolog K19084 braE; bacitracin transport system permease protein
D SCIM_0466 ABC-type antimicrobial peptide transport system ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D SCIM_0459 ABC-type bacitracin resistance protein ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D SCIM_0457 histidine kinase homolog K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D SCIM_0456 two-component response transcriptional regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D SCIM_1659 dltA; D-alanine-D-alanyl carrier protein ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SCIM_1658 dltB; D-alanyl transfer protein K03739 dltB; membrane protein involved in D-alanine export
D SCIM_1657 dltD; undecaprenol-phosphate-poly-(glycerophosphate subunit) D-alanine transfer protein K03740 dltD; D-alanine transfer protein
D SCIM_0785 ciaH; sensor histidine kinase CiaH K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D SCIM_0784 ciaR; two-component response transcriptional regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR
D SCIM_1344 D-alanyl-D-alanine carboxypeptidase homolog K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D SCIM_0548 two-component system histidine kinase homolog K18986 ihk; two-component system, OmpR family, sensor kinase Ihk [EC:2.7.13.3]
D SCIM_0547 two-component system transcriptional regulator K18987 irr; two-component system, OmpR family, response regulator Irr
D SCIM_0497 conserved hypothetical protein K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D SCIM_0498 blpR; response regulator homolog K07707 agrA; two-component system, LytTR family, response regulator AgrA
D SCIM_1704 sensor histidine kinase K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D SCIM_1703 two-component system transcriptional regulator K12295 comE; two-component system, LytTR family, response regulator ComE
D SCIM_1527 competence-specific transcriptional regulator ComX1 homolog K12296 comX1_2; competence protein ComX
D SCIM_0013 transcriptional regulator ComX1 homolog K12296 comX1_2; competence protein ComX
D SCIM_0269 comR2; competence-specific sigma factor K12296 comX1_2; competence protein ComX
D SCIM_0008 conserved hypothetical protein K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D SCIM_0333 hk11; histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D SCIM_0334 two-component system transcriptional regulator K07693 desR; two-component system, NarL family, response regulator DesR
D SCIM_0375 hk03; histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D SCIM_0376 two-component response transcriptional regulator K11618 liaR; two-component system, NarL family, response regulator LiaR
D SCIM_1661 conserved hypothetical protein K11621 liaG; lia operon protein LiaG
D SCIM_1499 glnA; glutamine synthetase type 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SCIM_0842 two-component sensor kinase YesM K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SCIM_0575 sensor histidine kinase homolog K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SCIM_0576 response regulator homolog K07720 yesN; two-component system, response regulator YesN
D SCIM_0841 conserved hypothetical protein K07720 yesN; two-component system, response regulator YesN
D SCIM_0059 conserved hypothetical protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:sie02024]
D SCIM_0365 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D SCIM_1294 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SCIM_0436 branched-chain amino acid ABC transporter amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D SCIM_0437 branched-chain amino acid ABC transporter permease protein K01997 livH; branched-chain amino acid transport system permease protein
D SCIM_0438 branched-chain amino acid ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein
D SCIM_0439 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D SCIM_0440 branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D SCIM_0497 conserved hypothetical protein K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D SCIM_0498 blpR; response regulator homolog K07707 agrA; two-component system, LytTR family, response regulator AgrA
D SCIM_0091 intermedilysin K11031 slo; thiol-activated cytolysin
D SCIM_1704 sensor histidine kinase K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D SCIM_1703 two-component system transcriptional regulator K12295 comE; two-component system, LytTR family, response regulator ComE
D SCIM_0785 ciaH; sensor histidine kinase CiaH K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D SCIM_0784 ciaR; two-component response transcriptional regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR
D SCIM_0322 aliB; ABC-type oligopeptide transporter K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1326 oligopeptide ABC transporter oligopeptide-binding protein AmiA K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1325 aliA; oligopeptide ABC transporter oligopeptide-binding protein AliA K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1324 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D SCIM_1323 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D SCIM_1322 oligopeptide ABC transporter ATP-binding protein AmiE K15583 oppD; oligopeptide transport system ATP-binding protein
D SCIM_1321 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D SCIM_1527 competence-specific transcriptional regulator ComX1 homolog K12296 comX1_2; competence protein ComX
D SCIM_0013 transcriptional regulator ComX1 homolog K12296 comX1_2; competence protein ComX
D SCIM_0269 comR2; competence-specific sigma factor K12296 comX1_2; competence protein ComX
D SCIM_0495 bacteriocin processing peptidase K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SCIM_0496 lactococcin A ABC transporter permease protein homolog K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D SCIM_0125 conserved hypothetical protein K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator
D SCIM_0113 positive transcriptional regulator MutR family homolog K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D SCIM_1650 conserved hypothetical protein K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D SCIM_0051 lacD; tagatose 1,6-diphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D SCIM_1152 lacD; tagatose-1,6-bisphosphate aldolase homolog K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40]
D SCIM_1218 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SCIM_0136 SpoIIIJ family protein homolog K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SCIM_0100 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D SCIM_0916 secG; preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D SCIM_1535 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D SCIM_1350 preprotein translocase YajC subunit K03210 yajC; preprotein translocase subunit YajC
D SCIM_1478 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D SCIM_1295 secA; preprotein translocase SecA ATPase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SCIM_0683 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D SCIM_0868 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D SCIM_1464 rbsB; periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly [PATH:sie02040]
D SCIM_1257 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D SCIM_0835 rpoD; DNA-directed RNA polymerase sigma subunit K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D SCIM_0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D SCIM_0732 inlA; internalin protein K13730 inlA; internalin A
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:sie01501]
D SCIM_0008 conserved hypothetical protein K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D SCIM_0322 aliB; ABC-type oligopeptide transporter K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1326 oligopeptide ABC transporter oligopeptide-binding protein AmiA K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1325 aliA; oligopeptide ABC transporter oligopeptide-binding protein AliA K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1324 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D SCIM_1323 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D SCIM_1322 oligopeptide ABC transporter ATP-binding protein AmiE K15583 oppD; oligopeptide transport system ATP-binding protein
D SCIM_1321 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D SCIM_0357 pbp1a; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SCIM_1509 pbp1b; penicillin-binding protein 1B K03693 pbp1b; penicillin-binding protein 1B
D SCIM_0099 pbp2A; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D SCIM_1165 pbp2b; penicillin-binding protein 2B K00687 pbp2B; penicillin-binding protein 2B
D SCIM_0320 pbpX; penicillin-binding protein 2X homolog K12556 pbp2X; penicillin-binding protein 2X
C 01502 Vancomycin resistance [PATH:sie01502]
D SCIM_1163 ddlA; D-Ala-D-Ala ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SCIM_1292 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D SCIM_1162 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D SCIM_0321 mraY; phospho-N-acetylmuramoyl pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SCIM_0408 murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D SCIM_1344 D-alanyl-D-alanine carboxypeptidase homolog K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:sie01503]
D SCIM_1706 degP; serine protease DegP K04771 degP; serine protease Do [EC:3.4.21.107]
D SCIM_0482 peptidyl-prolyl cis-trans isomerase homolog K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SCIM_1659 dltA; D-alanine-D-alanyl carrier protein ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SCIM_1658 dltB; D-alanyl transfer protein K03739 dltB; membrane protein involved in D-alanine export
D SCIM_1657 dltD; undecaprenol-phosphate-poly-(glycerophosphate subunit) D-alanine transfer protein K03740 dltD; D-alanine transfer protein
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:sie01000]
C 01001 Protein kinases [BR:sie01001]
D SCIM_0373 pkn; serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D SCIM_1579 tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D SCIM_0676 sensory box sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D SCIM_1568 sensor histidine kinase homolog K10681 saeS; two-component system, OmpR family, sensor histidine kinase SaeS [EC:2.7.13.3]
D SCIM_0457 histidine kinase homolog K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D SCIM_0785 ciaH; sensor histidine kinase CiaH K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D SCIM_0548 two-component system histidine kinase homolog K18986 ihk; two-component system, OmpR family, sensor kinase Ihk [EC:2.7.13.3]
D SCIM_0333 hk11; histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D SCIM_0375 hk03; histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D SCIM_0497 conserved hypothetical protein K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D SCIM_1704 sensor histidine kinase K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D SCIM_0842 two-component sensor kinase YesM K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SCIM_0575 sensor histidine kinase homolog K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:sie01009]
D SCIM_1064 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SCIM_0372 pppL; phosphoprotein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D SCIM_0996 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:sie01002]
D SCIM_0700 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D SCIM_0356 pepC; aminopeptidase C K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D SCIM_0865 guaA; bifunctional GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D SCIM_0957 glutamine amidotransferase homolog K07010 K07010; putative glutamine amidotransferase
D SCIM_0495 bacteriocin processing peptidase K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SCIM_0016 pcsB; secreted antigen GbpB/SagA K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SCIM_0029 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SCIM_0053 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SCIM_1502 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SCIM_0024 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D SCIM_1487 glmS; D-fructose-6-phosphate amidotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SCIM_0542 thiJ; 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D SCIM_0584 conserved hypothetical protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D SCIM_0831 srtA; sortase K07284 srtA; sortase A [EC:3.4.22.70]
D SCIM_1103 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D SCIM_0058 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D SCIM_0197 pepD; dipeptidase A K08659 pepDA; dipeptidase [EC:3.4.-.-]
D SCIM_0585 dipeptidase homolog K08659 pepDA; dipeptidase [EC:3.4.-.-]
D SCIM_0586 conserved hypothetical protein K07052 K07052; CAAX protease family protein
D SCIM_0607 conserved hypothetical protein K07052 K07052; CAAX protease family protein
D SCIM_0727 hypothetical protein K07052 K07052; CAAX protease family protein
D SCIM_1599 conserved hypothetical protein K07052 K07052; CAAX protease family protein
D SCIM_0499 conserved hypothetical protein K07052 K07052; CAAX protease family protein
D SCIM_1473 conserved hypothetical protein K07052 K07052; CAAX protease family protein
D SCIM_0040 conserved hypothetical protein K07052 K07052; CAAX protease family protein
D SCIM_1090 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SCIM_0523 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D SCIM_1406 endopeptidase O K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D SCIM_1344 D-alanyl-D-alanine carboxypeptidase homolog K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D SCIM_0593 pepV; dipeptidase K01274 pepV; beta-Ala-Xaa dipeptidase [EC:3.4.13.-]
D SCIM_1255 M20/M25/M40 family peptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D SCIM_0983 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D SCIM_1514 hipO; aminoacylase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
D SCIM_0902 map; methionine aminopeptidase A K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D SCIM_0265 pepP; aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D SCIM_1400 pepS; aminopeptidase PepS K19689 ampS; aminopeptidase [EC:3.4.11.-]
D SCIM_0011 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D SCIM_1469 pepA; glutamyl-aminopeptidase K01261 pepA; glutamyl aminopeptidase [EC:3.4.11.7]
D SCIM_1240 htpX; heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D SCIM_1475 zinc metalloprotease homolog K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D SCIM_1706 degP; serine protease DegP K04771 degP; serine protease Do [EC:3.4.21.107]
D SCIM_0310 prtS; subtilisin-like serine protease K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D SCIM_0346 pbp3; penicillin-binding protein 3 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SCIM_0435 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D SCIM_0175 pepXP; Xaa-Pro dipeptidyl-peptidase PepX K01281 pepX; X-Pro dipeptidyl-peptidase [EC:3.4.14.11]
D SCIM_0397 conserved hypothetical protein K07177 K07177; Lon-like protease
D SCIM_1062 sip; signal peptidase I homlogue K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SCIM_0192 signal peptidase I homolog K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SCIM_1007 U32 family peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:sie01003]
D SCIM_0673 family 1 glycosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D SCIM_0672 cpoA; glycosyltransferase K13677 dgs; 1,2-diacylglycerol-3-alpha-glucose alpha-1,2-glucosyltransferase [EC:2.4.1.208]
D SCIM_1114 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D SCIM_0357 pbp1a; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SCIM_1509 pbp1b; penicillin-binding protein 1B K03693 pbp1b; penicillin-binding protein 1B
D SCIM_0099 pbp2A; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D SCIM_1394 glycosyltransferase homolog K21011 pelF; polysaccharide biosynthesis protein PelF
D SCIM_0341 rgpG; N-acetylglycosaminyl transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:sie01005]
D SCIM_0655 rgpA; rhamnosyltransferase K12996 rgpA; rhamnosyltransferase [EC:2.4.1.-]
D SCIM_0656 rgpB; rhamnosyltransferase polysaccharide biosynthesis protein K12997 rgpB; rhamnosyltransferase [EC:2.4.1.-]
D SCIM_0660 rgpF; polysaccharide biosynthesis protein K07272 rgpF; rhamnosyltransferase [EC:2.4.1.-]
D SCIM_0341 rgpG; N-acetylglycosaminyl transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D SCIM_0653 gtrB; glycosyltransferase K12999 rgpI; glucosyltransferase [EC:2.4.1.-]
D SCIM_1577 galactosyltransferase K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:sie01011]
D SCIM_0905 conserved hypothetical protein K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SCIM_1101 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SCIM_0978 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SCIM_1224 murC; UDP-N-acetylmuramate-L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D SCIM_0407 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SCIM_0429 murE; UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase K05362 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase [EC:6.3.2.7]
D SCIM_1163 ddlA; D-Ala-D-Ala ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SCIM_0530 murM; peptidoglycan branched peptide synthesis protein K05363 murM; serine/alanine adding enzyme [EC:2.3.2.10]
D SCIM_0529 conserved hypothetical protein K12554 murN; alanine adding enzyme [EC:2.3.2.-]
D SCIM_1292 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D SCIM_1213 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D SCIM_0321 mraY; phospho-N-acetylmuramoyl pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SCIM_0408 murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D SCIM_0339 bacA; undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SCIM_1201 conserved hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SCIM_0357 pbp1a; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SCIM_1509 pbp1b; penicillin-binding protein 1B K03693 pbp1b; penicillin-binding protein 1B
D SCIM_0099 pbp2A; penicillin-binding protein 2A K12555 pbp2A; penicillin-binding protein 2A [EC:2.4.99.28 3.4.16.4]
D SCIM_1165 pbp2b; penicillin-binding protein 2B K00687 pbp2B; penicillin-binding protein 2B
D SCIM_0320 pbpX; penicillin-binding protein 2X homolog K12556 pbp2X; penicillin-binding protein 2X
D SCIM_0346 pbp3; penicillin-binding protein 3 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SCIM_1344 D-alanyl-D-alanine carboxypeptidase homolog K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D SCIM_0016 pcsB; secreted antigen GbpB/SagA K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SCIM_0029 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SCIM_0053 hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SCIM_1502 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D SCIM_0831 srtA; sortase K07284 srtA; sortase A [EC:3.4.22.70]
D SCIM_1103 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D SCIM_0058 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D SCIM_1221 conserved hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:sie01004]
D SCIM_0275 fabD; malonyl-CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SCIM_0273 fabH; 3-oxoacyl-(acyl-carrier-protein) syntase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SCIM_0277 fabF; 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SCIM_0472 fabG; 3-ketoacyl-(acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SCIM_0276 fabG; 3-ketoacyl-(acyl carrier protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SCIM_0279 fabZ; (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SCIM_0274 fabK; enoyl-acyl carrier protein reductase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D SCIM_0271 phaB; enoyl-CoA hydratase K18474 fabM; trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:5.3.3.14]
D SCIM_0020 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D SCIM_0823 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SCIM_0583 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:sie01008]
D SCIM_0039 amino acid recemase homolog K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:sie01006]
D SCIM_1177 ispA; farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D SCIM_1477 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D SCIM_1075 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:sie01007]
D SCIM_1516 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D SCIM_1510 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SCIM_1697 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SCIM_1379 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SCIM_1624 argS; class Ic arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SCIM_0454 metS; methionine-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SCIM_0416 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SCIM_0389 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SCIM_1404 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SCIM_0578 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SCIM_1636 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SCIM_1281 aspartyl-tRNA synthetase 1 K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SCIM_0806 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SCIM_1637 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SCIM_0314 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SCIM_0315 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SCIM_0284 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SCIM_1474 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SCIM_0550 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SCIM_0527 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SCIM_1081 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SCIM_1079 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SCIM_1285 aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SCIM_0018 araT; aromatic amino acid aminotransferase K00841 patA; aminotransferase [EC:2.6.1.-]
D SCIM_0431 bC-S lyase homolog K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SCIM_0826 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:sie00194]
D SCIM_1106 uncC; proton-translocating ATPase epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D SCIM_1107 uncD; proton-translocating ATPase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D SCIM_1108 uncG; proton-translocating ATPase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D SCIM_1109 uncA; proton-translocating ATPase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D SCIM_1110 uncH; proton-translocating ATPase delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D SCIM_1111 uncF; proton-translocating ATPase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D SCIM_1112 uncB; proton-translocating ATPase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:sie03000]
D SCIM_0969 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D SCIM_0200 conserved hypothetical protein K21959 ftsR; LysR family transcriptional regulator, cell division regulator
D SCIM_1151 lacR; lactose specific PTS system transcriptional repressor K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D SCIM_1089 fruR; DeoR family transcriptional repressor of the fructose operon K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D SCIM_1654 GlpR/DeoR family transcriptional repressor homolog K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D SCIM_0686 CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D SCIM_0671 ccpA; catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SCIM_1633 malR; maltose operon transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SCIM_0950 galR; galactose operon transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SCIM_1185 sucrose operon repressor homolog K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SCIM_1348 GalR family transcription regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D SCIM_1319 scrR; sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D SCIM_0420 treR; GntR family transcriptional regulator K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D SCIM_1306 bacterial regulatory protein K03492 gmuR; GntR family transcriptional regulator, regulator of glucomannan utilization
D SCIM_0866 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D SCIM_1058 TetR/AcrR family transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D SCIM_0312 MarR family transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D SCIM_1500 glnR; glutamine synthetase repressor K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D SCIM_1167 fur; ferric-uptake regulator protein homolog K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D SCIM_0505 catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases homolog K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator
D SCIM_1640 cadX; cadmium efflux system accessory protein K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D SCIM_1660 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D SCIM_1430 metalloregulator ScaR homolog K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D SCIM_0075 conserved hypothetical protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D SCIM_0951 birA1; biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SCIM_0125 conserved hypothetical protein K20373 rgg2; HTH-type transcriptional regulator, SHP2-responsive activator
D SCIM_0113 positive transcriptional regulator MutR family homolog K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D SCIM_1650 conserved hypothetical protein K20374 rgg3; HTH-type transcriptional regulator, SHP3-responsive repressor
D SCIM_0150 purR; purine operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D SCIM_1038 AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor
D SCIM_1284 transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D SCIM_1481 conserved hypothetical protein K03493 bglG1; transcriptional antiterminator
D SCIM_0518 celR; transcriptional regulator homolog K03491 licR; probable licABCH operon transcriptional regulator
D SCIM_1707 chromosome segregation protein homolog K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SCIM_1143 BglG/SacY family transcriptional antiterminator K02531 lacT; transcriptional antiterminator
D SCIM_1623 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D SCIM_0511 argR; arginine operon repressor K03402 argR; transcriptional regulator of arginine metabolism
D SCIM_1175 conserved hypothetical protein K03402 argR; transcriptional regulator of arginine metabolism
D SCIM_1339 hrcA; heat shock transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D SCIM_0106 ctsR; transcriptional regulator ctsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D SCIM_0483 conserved hypothetical protein K03973 pspC; phage shock protein C
D SCIM_0775 pyrR; pyrimidine operon transcriptional attenuation protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D SCIM_1231 nrdR; NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D SCIM_1527 competence-specific transcriptional regulator ComX1 homolog K12296 comX1_2; competence protein ComX
D SCIM_0013 transcriptional regulator ComX1 homolog K12296 comX1_2; competence protein ComX
D SCIM_0269 comR2; competence-specific sigma factor K12296 comX1_2; competence protein ComX
C 03021 Transcription machinery [BR:sie03021]
D SCIM_1529 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SCIM_1506 rpoB; DNA-directed RNA polymerase I beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SCIM_1505 rpoC; DNA-directed RNA polymerase I beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SCIM_1329 rpoE; DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
D SCIM_0368 rpoZ; DNA-directed RNA polymerase omega subunit homolog K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SCIM_0835 rpoD; DNA-directed RNA polymerase sigma subunit K03086 rpoD; RNA polymerase primary sigma factor
D SCIM_0303 nusA; nitrogen utilization substance protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D SCIM_0268 nusB; nitrogen utilization substance protein NusB K03625 nusB; transcription antitermination protein NusB
D SCIM_0101 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D SCIM_1220 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
C 03019 Messenger RNA biogenesis [BR:sie03019]
D SCIM_0679 rncS; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SCIM_1006 metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D SCIM_0157 metallo-beta-lactamase superfamily protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D SCIM_0366 metal dependent phosphohydrase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D SCIM_0915 vacB; VacB/Rnb family exoribonuclease K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SCIM_0149 cbf1; cmp-binding factor 1 K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D SCIM_1153 rheB; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SCIM_0347 rheB; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D SCIM_0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SCIM_1383 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D SCIM_1064 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D SCIM_1337 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SCIM_1454 groEL; chaperonin large subunit GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SCIM_0729 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:sie03011]
D SCIM_0827 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D SCIM_0103 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D SCIM_1549 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D SCIM_1675 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D SCIM_1538 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D SCIM_0257 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D SCIM_0152 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D SCIM_1541 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D SCIM_1372 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D SCIM_1556 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D SCIM_1530 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D SCIM_0151 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D SCIM_1531 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D SCIM_1542 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D SCIM_1386 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D SCIM_0891 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D SCIM_1546 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D SCIM_0259 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D SCIM_1551 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D SCIM_0788 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D SCIM_0880 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D SCIM_0488 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D SCIM_1552 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D SCIM_1555 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D SCIM_1554 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D SCIM_1543 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D SCIM_1540 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D SCIM_1678 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D SCIM_0968 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D SCIM_0487 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D SCIM_0967 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D SCIM_1373 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D SCIM_1545 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D SCIM_1536 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D SCIM_1548 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D SCIM_1528 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D SCIM_1539 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D SCIM_0781 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D SCIM_0989 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D SCIM_0693 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D SCIM_1550 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D SCIM_1553 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D SCIM_1544 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D SCIM_0695 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D SCIM_0328 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D SCIM_1547 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D SCIM_1537 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D SCIM_1136 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D SCIM_1638 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D SCIM_0139 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D SCIM_0990 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D SCIM_1532 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D SCIM_rRNA03 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA10 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA06 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA07 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA12 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA09 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA11 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA08 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:sie03009]
D SCIM_0679 rncS; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SCIM_0925 era; GTP-binding protein Era K03595 era; GTPase
D SCIM_0947 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D SCIM_0303 nusA; nitrogen utilization substance protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D SCIM_0268 nusB; nitrogen utilization substance protein NusB K03625 nusB; transcription antitermination protein NusB
D SCIM_0101 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D SCIM_0404 rsuA; ribosomal small subunit pseudouridine synthase A homolog K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SCIM_1387 16S rRNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SCIM_0144 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SCIM_0371 sunL; rRNA methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SCIM_0790 conserved hypothetical protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SCIM_0395 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SCIM_1433 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SCIM_1242 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SCIM_0318 mraW; S-adenosyl-methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SCIM_0446 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SCIM_1176 hlyA; rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SCIM_1511 rrmA; 23S rRNA m1G745 methyltransferase homolog K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SCIM_1375 trmH; TrmH family tRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SCIM_1705 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SCIM_0614 methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SCIM_0399 Fe-S cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SCIM_0627 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SCIM_1206 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SCIM_1031 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SCIM_0701 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SCIM_0098 RluD subfamily ribosomal large subunit pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SCIM_0470 acetyltransferases homolog K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D SCIM_0160 ribosomal protein-alanine acetyltransferase homolog K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D SCIM_0964 rimM; RimM protein K02860 rimM; 16S rRNA processing protein RimM
D SCIM_1434 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D SCIM_1592 Holliday junction resolvase-like protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D SCIM_1378 conserved hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D SCIM_1153 rheB; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SCIM_0347 rheB; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
D SCIM_0145 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D SCIM_1227 engA; GTP-binding protein EngA K03977 engA; GTPase
D SCIM_0879 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
D SCIM_1074 hflX; HflX GTPase K03665 hflX; GTPase
D SCIM_1273 GTP-binding protein K06948 yqeH; 30S ribosome assembly GTPase
D SCIM_0860 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SCIM_1432 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D SCIM_0307 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D SCIM_0302 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D SCIM_1694 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
D SCIM_1268 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
D SCIM_0927 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
D SCIM_1272 ancient RNA-binding IF3-C fold protein homolog K07574 yhbY; RNA-binding protein
D SCIM_0394 raiA; 30S ribosomal interface protein S30EA K05808 hpf; ribosome hibernation promoting factor
D SCIM_0004 GTP-binding protein K06942 ychF; ribosome-binding ATPase
D SCIM_1238 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:sie03016]
D SCIM_1072 elaC; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D SCIM_1083 papS; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D SCIM_1474 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SCIM_0416 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SCIM_1404 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SCIM_0454 metS; methionine-tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SCIM_1624 argS; class Ic arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SCIM_0578 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SCIM_1636 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SCIM_1281 aspartyl-tRNA synthetase 1 K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SCIM_0527 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SCIM_0806 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SCIM_0550 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SCIM_0284 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SCIM_1379 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SCIM_0389 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SCIM_1637 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SCIM_1081 pheS; phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SCIM_1079 pheT; phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SCIM_1510 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SCIM_1697 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SCIM_1431 dtd; D-tyrosyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D SCIM_0297 diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D SCIM_0300 yhfE; tRNA [guanine-N (7)-] methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SCIM_1334 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SCIM_1051 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D SCIM_1036 pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCIM_0689 class-V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCIM_0860 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SCIM_1075 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SCIM_0608 tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SCIM_1680 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SCIM_0135 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D SCIM_0314 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SCIM_0315 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SCIM_1516 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D SCIM_0580 conserved hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D SCIM_0697 regulatory protein homolog K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D SCIM_0123 cytidine/deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D SCIM_0109 nifR; dihydrouridine synthase TIM-barrel protein NifR3 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D SCIM_0873 glucose inhibited division protein A K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D SCIM_0963 trmD; tRNA [Guanine-N(1)-]-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D SCIM_0662 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D SCIM_1203 TrmH family RNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D SCIM_1217 SpoU rRNA methylase family protein K03437 spoU; RNA methyltransferase, TrmH family
D SCIM_1681 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SCIM_0512 queA; S-adenosylmethionine tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D SCIM_1453 conserved hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D SCIM_1558 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SCIM_0690 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SCIM_0009 MesJ/Ycf62 family protein homolog K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D SCIM_0159 conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D SCIM_0161 gcp; secreted metalloendopeptidase Gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D SCIM_0293 ATP/GTP hydrolase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D SCIM_1260 conserved hypothetical protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D SCIM_0915 vacB; VacB/Rnb family exoribonuclease K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SCIM_1383 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:sie03012]
D SCIM_0306 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D SCIM_0991 cmk; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D SCIM_1002 uup; ABC-NBD transporters with duplicated ATPase domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D SCIM_0104 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D SCIM_0604 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D SCIM_0153 fus; translation elongation factor G K02355 fusA; elongation factor G
D SCIM_0858 prfA; protein chain release factor A K02835 prfA; peptide chain release factor 1
D SCIM_0490 rrf; ribosome recycling factor K02838 frr; ribosome recycling factor
D SCIM_0859 hemK; HemK protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D SCIM_0005 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D SCIM_1533 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D SCIM_0266 efp; elongation factor P K02356 efp; elongation factor P
D SCIM_0535 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D SCIM_1156 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:sie03110]
D SCIM_0757 clpA; ATP-dependent Clp protease K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D SCIM_0107 clpC; ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D SCIM_1192 clpE; ATP-dependent Clp protease ATP-binding subunit ClpE K03697 clpE; ATP-dependent Clp protease ATP-binding subunit ClpE
D SCIM_1486 clpL; ATP-dependent protease ATP-binding subunit ClpL K04086 clpL; ATP-dependent Clp protease ATP-binding subunit ClpL
D SCIM_0710 clpX; ATP-dependent protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D SCIM_1337 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SCIM_1454 groEL; chaperonin large subunit GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SCIM_1336 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D SCIM_0110 hslO; Hsp33-like chaperonin K04083 hslO; molecular chaperone Hsp33
D SCIM_1338 grpE; chaperone protein GrpE K03687 GRPE; molecular chaperone GrpE
D SCIM_1455 groES; chaperonin small subunit GroES K04078 groES; chaperonin GroES
D SCIM_1706 degP; serine protease DegP K04771 degP; serine protease Do [EC:3.4.21.107]
D SCIM_0011 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D SCIM_1112 uncB; proton-translocating ATPase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SCIM_0310 prtS; subtilisin-like serine protease K01361 E3.4.21.96; lactocepin [EC:3.4.21.96]
D SCIM_0570 N-acetyl-beta-D-glucosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D SCIM_0482 peptidyl-prolyl cis-trans isomerase homolog K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SCIM_0377 pplB; cyclophilin type peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D SCIM_0525 prtM; foldase protein prsA precursor homolog K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D SCIM_0198 trx; thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:sie04131]
D SCIM_0728 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SCIM_0568 conserved hypothetical protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D SCIM_0156 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SCIM_1166 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SCIM_1563 conserved hypothetical protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SCIM_1063 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:sie03032]
D SCIM_0001 dnaA; chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein
D SCIM_1677 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D SCIM_1618 conserved hypothetical protein K02315 dnaC; DNA replication protein DnaC
D SCIM_0834 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D SCIM_1230 dnaB; chromosome replication initiation protein DnaB K03346 dnaB; replication initiation and membrane attachment protein
D SCIM_1229 dnaI; primosomal protein DnaI K11144 dnaI; primosomal protein DnaI
D SCIM_1465 ssb2; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0258 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0762 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0783 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_1065 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SCIM_1401 polC; DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SCIM_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SCIM_0492 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SCIM_0444 DNA polymerase III delta' subunit homolog K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SCIM_0878 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D SCIM_0193 rnhC; ribonuclease HIII K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D SCIM_1562 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SCIM_0894 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SCIM_0737 methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SCIM_0830 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D SCIM_0544 gyrB; DNA gyrase B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D SCIM_0825 parC; topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SCIM_0824 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SCIM_0875 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D SCIM_0756 conserved hypothetical protein K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:sie03036]
D SCIM_0679 rncS; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SCIM_0001 dnaA; chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein
D SCIM_0402 dps; DNA protection system DNA-binding ferritin-like protein K04047 dps; starvation-inducible DNA-binding protein
D SCIM_0680 smc; structural maintenance of chromosome protein K03529 smc; chromosome segregation protein
D SCIM_1208 segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D SCIM_1207 segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D SCIM_0410 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D SCIM_0007 divIC; cell division protein DivIC K13052 divIC; cell division protein DivIC
D SCIM_0536 ftsE; cell division ABC transporter ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SCIM_0484 ftsK; DNA translocase ftsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D SCIM_0250 FtsK/SpoIIIE family protein homolog K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D SCIM_0319 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D SCIM_0409 conserved hypothetical protein K03589 ftsQ; cell division protein FtsQ
D SCIM_0600 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D SCIM_0537 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D SCIM_0411 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D SCIM_0545 ezrA; cell division regulator K06286 ezrA; septation ring formation regulator
D SCIM_0415 divIVA; cell division protein DivIVA K04074 divIVA; cell division initiation protein
D SCIM_0413 conserved hypothetical protein K09772 sepF; cell division inhibitor SepF
D SCIM_0014 cell shape determining protein MreC homolog K03570 mreC; rod shape-determining protein MreC
D SCIM_0015 conserved hypothetical protein K03571 mreD; rod shape-determining protein MreD
D SCIM_0541 rodA; Rod shape determining protein K05837 rodA; rod shape determining protein RodA
D SCIM_0772 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D SCIM_1707 chromosome segregation protein homolog K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SCIM_0825 parC; topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SCIM_0824 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SCIM_1680 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SCIM_1242 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SCIM_0873 glucose inhibited division protein A K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D SCIM_1608 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D SCIM_1262 conserved hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D SCIM_0711 GTP-binding protein K03978 engB; GTP-binding protein
D SCIM_0731 conserved hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:sie03400]
D SCIM_0447 methylated-DNA-(protein)-cysteine S-methyltransferase homolog K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SCIM_0909 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D SCIM_1653 conserved hypothetical protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D SCIM_1029 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D SCIM_0449 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D SCIM_0664 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCIM_0828 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCIM_1219 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCIM_1195 NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCIM_0908 mutX; mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCIM_1436 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCIM_0169 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SCIM_1519 dutA; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SCIM_1600 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D SCIM_0919 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D SCIM_0451 exodeoxyribonuclease homolog K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D SCIM_1066 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SCIM_0894 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SCIM_1562 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SCIM_0263 uvrA; excinuclease ATPase subunitA K03701 uvrA; excinuclease ABC subunit A
D SCIM_0719 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D SCIM_0591 uvrC; excinuclease complex nuclease subunit C K03703 uvrC; excinuclease ABC subunit C
D SCIM_1060 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SCIM_1506 rpoB; DNA-directed RNA polymerase I beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SCIM_1505 rpoC; DNA-directed RNA polymerase I beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SCIM_1529 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SCIM_1329 rpoE; DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
D SCIM_0368 rpoZ; DNA-directed RNA polymerase omega subunit homolog K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SCIM_0006 trcF; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D SCIM_1622 hexA; DNA mismatch repair protein HexA K03555 mutS; DNA mismatch repair protein MutS
D SCIM_0196 mutS2; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D SCIM_1604 hexB; DNA mismatch repair protein HexB K03572 mutL; DNA mismatch repair protein MutL
D SCIM_1178 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D SCIM_1065 dnaE; DNA-polymerase III alpha-chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SCIM_1401 polC; DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D SCIM_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SCIM_0492 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SCIM_0444 DNA polymerase III delta' subunit homolog K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SCIM_1465 ssb2; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0258 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0762 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0783 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0737 methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SCIM_0191 RecD/TraA family helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D SCIM_1596 recA; recombinase A K03553 recA; recombination protein RecA
D SCIM_1601 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D SCIM_0054 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D SCIM_0369 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D SCIM_1517 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D SCIM_1695 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D SCIM_1290 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SCIM_0019 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D SCIM_1164 recR; recombination protein RecR K06187 recR; recombination protein RecR
D SCIM_1174 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D SCIM_0358 recU; recombinase K03700 recU; recombination protein U
D SCIM_1118 rexA; exonuclease RexA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D SCIM_1119 rexB; exonuclease RexB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D SCIM_0830 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D SCIM_0544 gyrB; DNA gyrase B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D SCIM_0875 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D SCIM_0190 dinP; DNA-damage inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D SCIM_0381 recX; RecA regulator RecX K03565 recX; regulatory protein
D SCIM_0539 dinG; ATP-dependent DNA helicase; DNA polymerase III epsilon subunit homolog K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D SCIM_0589 nrdE; ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SCIM_0587 nrdF; ribonucleotide-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SCIM_1135 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:sie03029]
D SCIM_0306 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D SCIM_0991 cmk; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D SCIM_0104 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D SCIM_0604 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D SCIM_0153 fus; translation elongation factor G K02355 fusA; elongation factor G
D SCIM_0925 era; GTP-binding protein Era K03595 era; GTPase
D SCIM_1510 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SCIM_1404 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SCIM_1636 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SCIM_1281 aspartyl-tRNA synthetase 1 K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SCIM_1624 argS; class Ic arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SCIM_1279 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D SCIM_1278 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D SCIM_1280 gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D SCIM_1465 ssb2; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0258 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0762 conserved hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_0783 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D SCIM_1337 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SCIM_1338 grpE; chaperone protein GrpE K03687 GRPE; molecular chaperone GrpE
D SCIM_1454 groEL; chaperonin large subunit GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SCIM_1455 groES; chaperonin small subunit GroES K04078 groES; chaperonin GroES
D SCIM_1336 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D SCIM_1036 pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCIM_0689 class-V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCIM_1218 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SCIM_0136 SpoIIIJ family protein homolog K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:sie02000]
D SCIM_0127 conserved hypothetical protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D SCIM_1057 ABC-type multidrug transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D SCIM_0128 conserved hypothetical protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D SCIM_1056 ABC-type multidrug transporter K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D SCIM_0885 ABC transporter K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_0884 ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_1099 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_0714 multidrug ABC transporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_1311 ABC multidrug transporter K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_1098 ABC transporter permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_1310 ABC multidrug transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_0715 multidrug ABC transporter K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D SCIM_0929 ABC transporter homolog K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SCIM_0928 ABC transporter homolog K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SCIM_0495 bacteriocin processing peptidase K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter
D SCIM_1082 ABC-type transporter ATPase component K15738 uup; ABC transport system ATP-binding/permease protein
D SCIM_0974 potD; spermidine/putrescine ABC transporter K11069 potD; spermidine/putrescine transport system substrate-binding protein
D SCIM_0975 potC; spermidine/putrescine ABC transporter membrane-spanning permease K11070 potC; spermidine/putrescine transport system permease protein
D SCIM_0976 potB; spermidine/putrescine ABC transporter membrane-spanning permease K11071 potB; spermidine/putrescine transport system permease protein
D SCIM_0977 potA; spermidine/putrescine ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D SCIM_0596 glycine betaine transport system permease protein homolog K05845 opuC; osmoprotectant transport system substrate-binding protein
D SCIM_0597 glycine betaine transport ATP-binding protein homolog K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D SCIM_1376 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D SCIM_1629 malE; maltose/maltodextrin ABC transporter substrate binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D SCIM_1630 malF; maltodextrin ABC transporter permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D SCIM_1631 malG; maltodextrin ABC transporter membrane-spanning protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D SCIM_0573 ABC sugar transporter solute binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D SCIM_0571 ABC sugar transporter permease protein homolog K17319 lplB; putative aldouronate transport system permease protein
D SCIM_0572 ABC sugar transporter membrane spanning permease K17320 lplC; putative aldouronate transport system permease protein
D SCIM_1464 rbsB; periplasmic sugar-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D SCIM_1184 sugar ABC transporter substrate-binding protein K10120 msmE; fructooligosaccharide transport system substrate-binding protein
D SCIM_1183 sugar ABC transporter membrane-spanning permease K10121 msmF; fructooligosaccharide transport system permease protein
D SCIM_1182 sugar ABC transporter membrane-spanning permease K10122 msmG; fructooligosaccharide transport system permease protein
D SCIM_0794 lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D SCIM_0796 ABC transporter membrane-spanning permease K23535 nupB; general nucleoside transport system permease protein
D SCIM_0797 conserved hypothetical protein K23536 nupC; general nucleoside transport system permease protein
D SCIM_0795 sugar ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D SCIM_0064 sugar ABC transporter sugar-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D SCIM_1461 sugar-binding periplasmic protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D SCIM_0065 sugar ABC transporter permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D SCIM_0066 sugar ABC transporter permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D SCIM_1045 pstS; ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D SCIM_1044 pstC1; ABC transporter membrane-spanning permease-phosphate transport K02037 pstC; phosphate transport system permease protein
D SCIM_1043 pstC; ABC transporter membrane-spanning permease-phosphate transport K02038 pstA; phosphate transport system permease protein
D SCIM_1041 pstB1; phosphate import ATP-binding protein pstB 1 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SCIM_1042 pstB2; phosphate import ATP-binding protein pstB 2 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SCIM_0718 glnP; ABC transporter membrane spanning permease-glutamine transport K10036 glnH; glutamine transport system substrate-binding protein
D SCIM_0717 glnQ; ABC transporter ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D SCIM_1257 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D SCIM_0348 amino acid ABC transporter permease protein K10009 tcyB; L-cystine transport system permease protein
D SCIM_0349 amino acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D SCIM_0436 branched-chain amino acid ABC transporter amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D SCIM_0437 branched-chain amino acid ABC transporter permease protein K01997 livH; branched-chain amino acid transport system permease protein
D SCIM_0438 branched-chain amino acid ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein
D SCIM_0439 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D SCIM_0440 branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D SCIM_1256 lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D SCIM_1253 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D SCIM_1254 ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D SCIM_1127 ABC transport system periplasmic component K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D SCIM_1126 ABC transporter permease component K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D SCIM_1125 ABC transporter ATPase component K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D SCIM_0337 amino acid ABC transporter amino acid binding protein K17073 lysX1; putative lysine transport system substrate-binding protein
D SCIM_0336 amino acid ABC transporter ATP-binding protein K17076 lysY; putative lysine transport system ATP-binding protein
D SCIM_0322 aliB; ABC-type oligopeptide transporter K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1326 oligopeptide ABC transporter oligopeptide-binding protein AmiA K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1325 aliA; oligopeptide ABC transporter oligopeptide-binding protein AliA K15580 oppA; oligopeptide transport system substrate-binding protein
D SCIM_1324 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D SCIM_1323 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D SCIM_1322 oligopeptide ABC transporter ATP-binding protein AmiE K15583 oppD; oligopeptide transport system ATP-binding protein
D SCIM_1321 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D SCIM_1172 conserved hypothetical protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D SCIM_1170 conserved hypothetical protein K25283 yclO; iron-siderophore transport system permease protein
D SCIM_1169 conserved hypothetical protein K25284 yclN; iron-siderophore transport system permease protein
D SCIM_1171 iron-compound ABC transporter ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D SCIM_0962 lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D SCIM_0095 adcA; zinc ABC transporter zinc-binding lipoprotein K09815 znuA; zinc transport system substrate-binding protein
D SCIM_0094 adcB; zinc ABC transporter permease protein K09816 znuB; zinc transport system permease protein
D SCIM_0093 adcC; zinc ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D SCIM_1429 manganese/zinc ABC transporter substrate-binding lipoprotein precursor K19971 psaA; manganese/zinc transport system substrate-binding protein
D SCIM_1428 ABC-type Mn2+/Zn2+ transport systems permease component K19972 psaC; manganese/zinc transport system permease protein
D SCIM_1427 ABC transporter ATP-binding protein K10830 psaB; manganese/zinc transport system ATP-binding protein [EC:7.2.2.5]
D SCIM_1077 conserved hypothetical protein K03523 bioY; biotin transport system substrate-specific component
D SCIM_1251 conserved hypothetical protein K16924 mtsT; energy-coupling factor transport system substrate-specific component
D SCIM_0129 conserved hypothetical protein K16926 htsT; energy-coupling factor transport system substrate-specific component
D SCIM_1246 cobalt transporter K16785 ecfT; energy-coupling factor transport system permease protein
D SCIM_1687 ABC transporter membrane-spanning permease K16785 ecfT; energy-coupling factor transport system permease protein
D SCIM_0235 conserved hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D SCIM_1689 ABC transporter ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SCIM_1688 ABC transporter ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SCIM_1247 ABC cobalt transporter ATPase component K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SCIM_0236 conserved hypothetical protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SCIM_0131 conserved hypothetical protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SCIM_0237 ABC transporter permease homolog K16925 ykoE; energy-coupling factor transport system permease protein
D SCIM_0462 ABC transporter homolog K11051 cylB; multidrug/hemolysin transport system permease protein
D SCIM_0461 ABC-type multidrug transport system ATPase component homolog K11050 cylA; multidrug/hemolysin transport system ATP-binding protein
D SCIM_0467 ABC-type antimicrobial peptide transport system permease component homolog K19084 braE; bacitracin transport system permease protein
D SCIM_0460 ABC-type bacitracin resistance protein permease component homolog K19084 braE; bacitracin transport system permease protein
D SCIM_0466 ABC-type antimicrobial peptide transport system ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D SCIM_0459 ABC-type bacitracin resistance protein ATPase component K19083 braD; bacitracin transport system ATP-binding protein
D SCIM_0537 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D SCIM_0536 ftsE; cell division ABC transporter ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SCIM_0843 conserved hypothetical protein K25154 evrC; viologen exporter family transport system permease protein
D SCIM_0844 conserved hypothetical protein K25155 evrB; viologen exporter family transport system permease protein
D SCIM_0845 ABC transporter K25156 evrA; viologen exporter family transport system ATP-binding protein
D SCIM_0299 ABC type multidrug tranport system permease component K25157 ecsB; ABC-2 type transport system permease protein
D SCIM_0298 ABC type multidrug transport system ATPase component K25158 ecsA; ABC-2 type transport system ATP-binding protein
D SCIM_1120 ABC transporter membrane-spanning permease homolog K01992 ABC-2.P; ABC-2 type transport system permease protein
D SCIM_0657 rgpC; ABC-type lipopolysaccharide transport system K01992 ABC-2.P; ABC-2 type transport system permease protein
D SCIM_1340 ABC multidrug transporter permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D SCIM_0232 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D SCIM_0332 ABC-type multidrug transport system permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D SCIM_0155 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D SCIM_0117 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D SCIM_0658 rgpD; putative polysaccharide ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SCIM_1121 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SCIM_1419 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SCIM_0154 conserved hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SCIM_0331 ABC-type multidrug transport system ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SCIM_1341 ABC multidrug transporter ATPase component homolog K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SCIM_1409 bacitracin ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SCIM_0116 conserved hypothetical protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SCIM_0233 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SCIM_1446 conserved hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D SCIM_0553 conserved hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D SCIM_1188 conserved hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D SCIM_1190 transmembrane protein Vexp3 homolog K02004 ABC.CD.P; putative ABC transport system permease protein
D SCIM_0211 conserved hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D SCIM_1508 hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D SCIM_0552 ABC-type antimicrobial peptide transport system ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SCIM_1447 ABC transporter ATP-binding protein homolog K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SCIM_1507 conserved hypothetical protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SCIM_1189 ABC transporter ATP-binding protein Vexp2 homolog K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SCIM_0212 yujD; ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SCIM_0342 ABC transporter ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D SCIM_0856 conserved hypothetical protein K26939 norM; MATE family, multidrug efflux pump
D SCIM_0086 norN; multi antimicrobial extrusion efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D SCIM_0220 multi antimicrobial extrusion protein MatE homolog K26937 dinF; MATE family, multidrug efflux pump
D SCIM_0515 sugar-H+ symporter permease domain of the major facilitator superfamily homolog K02532 lacY; MFS transporter, OHS family, lactose permease
D SCIM_1652 conserved hypothetical protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D SCIM_0917 pmrA; major facilitator superfamily multi-drug resistance efflux pump PmrA homolog K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D SCIM_1019 arabinose efflux permease homolog K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D SCIM_0590 phosphoenolpyruvate/sugar-specific PTS system enzyme I K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D SCIM_1235 glucose-specific PTS system IIABC components K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SCIM_1566 conserved hypothetical protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D SCIM_1234 ptsG; glucose-specific PTS system IIABC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D SCIM_0073 conserved hypothetical protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SCIM_1317 scrA; sugar specific PTS system IIC components K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D SCIM_0421 pttB; trehalose-specific PTS system IIABC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D SCIM_1087 fruA; fructose specific PTS system IIABC components K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D SCIM_1142 lacF; lactose-specific PTS system IIA component K02786 lacF; lactose PTS system EIIA component [EC:2.7.1.207]
D SCIM_1141 lacE; lactose-specific PTS system IIBC component K02788 lacE; lactose PTS system EIICB component [EC:2.7.1.207]
D SCIM_0519 PTS system IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SCIM_0559 cellobiose-specific PTS system IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SCIM_0218 lactose/cellobiose-specific PTS system IIA subunit homolog K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D SCIM_0517 sugar-specific PTS system EII component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SCIM_0560 cellobiose-specific PTS system IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SCIM_0217 ptcB; cellobiose-specific PTS system components IIB K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D SCIM_1307 cellobiose-specific PTS system IIC component homolog K02761 celB; cellobiose PTS system EIIC component
D SCIM_0942 cellobiose-specific PTS system IIC component K02761 celB; cellobiose PTS system EIIC component
D SCIM_0521 lactose/cellobiose specific PTS system IIC subunit homolog K02761 celB; cellobiose PTS system EIIC component
D SCIM_0561 cellobiose-specific PTS system IIC component K02761 celB; cellobiose PTS system EIIC component
D SCIM_0214 cellobiose-specific PTS system component IIC homolog K02761 celB; cellobiose PTS system EIIC component
D SCIM_1148 sugar-specific PTS system EII component K20112 gatA; galactose PTS system EIIA component [EC:2.7.1.204]
D SCIM_1147 galactitol-specific PTS system IIB component K20113 gatB; galactose PTS system EIIB component [EC:2.7.1.204]
D SCIM_1146 sugar-specific PTS system EII component K20114 gatC; galactose PTS system EIIC component
D SCIM_0288 manL; mannose-specific PTS system EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D SCIM_0049 mannose-specific PTS system IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D SCIM_0047 mannose-specific PTS system IIC component homolog K02795 manY; mannose PTS system EIIC component
D SCIM_0287 manM; mannose-specific PTS system IIC component K02795 manY; mannose PTS system EIIC component
D SCIM_1458 mannose-specific PTS system IIC component K02795 manY; mannose PTS system EIIC component
D SCIM_0048 mannose-specific PTS system IID component K02796 manZ; mannose PTS system EIID component
D SCIM_0286 manN; mannose-specific PTS system component IID K02796 manZ; mannose PTS system EIID component
D SCIM_1355 PTS system IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SCIM_1460 mannose-specific PTS system IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D SCIM_1353 PTS system IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D SCIM_1352 PTS system IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D SCIM_1351 N-acetylgalactosamine-specific PTS system IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D SCIM_1484 sugar-specific PTS system EII component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D SCIM_1485 ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component
D SCIM_0176 glycerol uptake facilitator protein homolog K02440 glpF; glycerol uptake facilitator
D SCIM_0833 large conductance mechano-sensitive ion channel K03282 mscL; large conductance mechanosensitive channel
D SCIM_0203 small-conductance mechanosensitive efflux channel K22044 ybiO; moderate conductance mechanosensitive channel
D SCIM_0262 corA; CorA family magnesium and cobalt transporter K03284 corA; magnesium transporter
D SCIM_0419 hlyX; hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SCIM_1096 effector of murein hydrolase LrgA K06518 cidA; holin-like protein
D SCIM_1197 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D SCIM_1205 trkH; Trk family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D SCIM_0317 trkH2; Trk family potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D SCIM_1204 trkA; Trk family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D SCIM_0316 trkA; Trk transporter NAD+ binding protein K03499 trkA; trk/ktr system potassium uptake protein
D SCIM_0776 pyrP; uracil permease K02824 uraA; uracil permease
D SCIM_0855 xanthine permease K16169 pbuX; xanthine permease
D SCIM_0292 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D SCIM_0850 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D SCIM_0707 putative chloride ion channel protein K03281 clcA; chloride channel protein, CIC family
D SCIM_0308 Na/Pi cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter
D SCIM_1364 malate permease K24180 mleP; malate permease and related proteins
D SCIM_0162 branched-chain amino acid transport protein AzlC homolog K26605 azlC; branched chain amino acid efflux pump
D SCIM_0163 conserved hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D SCIM_1202 conserved hypothetical protein K23675 fmnP; riboflavin transporter
D SCIM_0889 conserved hypothetical protein K16788 niaX; niacin transporter
D SCIM_0301 conserved hypothetical protein K22736 VIT; vacuolar iron transporter family protein
D SCIM_0600 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D SCIM_0838 cytochrome C-type biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D SCIM_0496 lactococcin A ABC transporter permease protein homolog K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter
D SCIM_1579 tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D SCIM_1580 capsular polysaccharide biosynthesis protein Wzd homolog K19420 epsA; protein tyrosine kinase modulator
C 02044 Secretion system [BR:sie02044]
D SCIM_0913 DNA uptake protein homolog K02237 comEA; competence protein ComEA
D SCIM_0820 cytidine and deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D SCIM_0912 competence protein homolog K02238 comEC; competence protein ComEC
D SCIM_0392 comFA; superfamily II ATP-dependent DNA/RNA helicase K02240 comFA; competence protein ComFA
D SCIM_0393 comFC; late competence protein homolog K02242 comFC; competence protein ComFC
D SCIM_1497 comYA; competence protein ComYA K02243 comGA; competence protein ComGA
D SCIM_1495 comYB; competence protein comYB K02244 comGB; competence protein ComGB
D SCIM_1494 comYC; competence protein ComYC K02245 comGC; competence protein ComGC
D SCIM_1493 comYD; competence protein ComYD K02246 comGD; competence protein ComGD
D SCIM_1491 conserved hypothetical protein K02248 comGF; competence protein ComGF
D SCIM_0401 pilD; type 4 prepilin peptidase homolog K02236 comC; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D SCIM_1295 secA; preprotein translocase SecA ATPase subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SCIM_0100 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D SCIM_0916 secG; preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D SCIM_1535 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D SCIM_0868 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SCIM_0683 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D SCIM_1350 preprotein translocase YajC subunit K03210 yajC; preprotein translocase subunit YajC
D SCIM_1478 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D SCIM_1218 yidC; preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SCIM_0136 SpoIIIJ family protein homolog K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:sie02042]
D SCIM_0091 intermedilysin K11031 slo; thiol-activated cytolysin
D SCIM_0419 hlyX; hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SCIM_0798 hemolysin III-like membrane protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:sie02022]
D SCIM_0676 sensory box sensor histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D SCIM_0675 two-component response transcriptional regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D SCIM_1568 sensor histidine kinase homolog K10681 saeS; two-component system, OmpR family, sensor histidine kinase SaeS [EC:2.7.13.3]
D SCIM_1569 DNA-binding response regulator K10682 saeR; two-component system, OmpR family, response regulator SaeR
D SCIM_0457 histidine kinase homolog K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D SCIM_0456 two-component response transcriptional regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D SCIM_0785 ciaH; sensor histidine kinase CiaH K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3]
D SCIM_0784 ciaR; two-component response transcriptional regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR
D SCIM_0548 two-component system histidine kinase homolog K18986 ihk; two-component system, OmpR family, sensor kinase Ihk [EC:2.7.13.3]
D SCIM_0547 two-component system transcriptional regulator K18987 irr; two-component system, OmpR family, response regulator Irr
D SCIM_0333 hk11; histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D SCIM_0334 two-component system transcriptional regulator K07693 desR; two-component system, NarL family, response regulator DesR
D SCIM_0375 hk03; histidine kinase K11617 liaS; two-component system, NarL family, sensor histidine kinase LiaS [EC:2.7.13.3]
D SCIM_0376 two-component response transcriptional regulator K11618 liaR; two-component system, NarL family, response regulator LiaR
D SCIM_0497 conserved hypothetical protein K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D SCIM_0498 blpR; response regulator homolog K07707 agrA; two-component system, LytTR family, response regulator AgrA
D SCIM_1704 sensor histidine kinase K12294 comD; two-component system, LytTR family, sensor histidine kinase ComD [EC:2.7.13.3]
D SCIM_1703 two-component system transcriptional regulator K12295 comE; two-component system, LytTR family, response regulator ComE
D SCIM_0463 LytTr family transcriptional regulator homolog K02477 K02477; two-component system, LytTR family, response regulator
D SCIM_0842 two-component sensor kinase YesM K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SCIM_0575 sensor histidine kinase homolog K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D SCIM_0576 response regulator homolog K07720 yesN; two-component system, response regulator YesN
D SCIM_0841 conserved hypothetical protein K07720 yesN; two-component system, response regulator YesN
C 02035 Bacterial motility proteins [BR:sie02035]
D SCIM_1257 amino acid ABC transporter substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:sie04812]
D SCIM_0411 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D SCIM_0410 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D SCIM_0772 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D SCIM_1707 chromosome segregation protein homolog K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:sie04147]
D SCIM_0814 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SCIM_0156 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SCIM_1504 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SCIM_1063 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SCIM_0482 peptidyl-prolyl cis-trans isomerase homolog K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SCIM_1454 groEL; chaperonin large subunit GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SCIM_1337 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SCIM_0133 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SCIM_1696 guaB; inositol-5-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D SCIM_0604 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D SCIM_0297 diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D SCIM_0829 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D SCIM_1534 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D SCIM_1094 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D SCIM_0949 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D SCIM_1117 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D SCIM_0134 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D SCIM_1499 glnA; glutamine synthetase type 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SCIM_0028 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SCIM_1020 gdh; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SCIM_1699 conserved hypothetical protein K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SCIM_0605 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SCIM_1166 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D SCIM_1563 conserved hypothetical protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:sie02048]
D SCIM_1261 conserved hypothetical protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D SCIM_1265 conserved hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D SCIM_1266 conserved hypothetical protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D SCIM_0737 methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SCIM_1489 conserved hypothetical protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D SCIM_0692 DNA or RNA helicases of superfamily II-like protein K01156 res; type III restriction enzyme [EC:3.1.21.5]
D SCIM_0691 type III restriction-modification system methylation subunit homolog K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D SCIM_0122 conserved hypothetical protein K07448 mrr; restriction system protein
D SCIM_0483 conserved hypothetical protein K03973 pspC; phage shock protein C
D SCIM_0067 conserved hypothetical protein K19334 tabA; biofilm protein TabA
D SCIM_0411 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D SCIM_0825 parC; topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SCIM_0824 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SCIM_1036 pyridoxal-phosphate dependent aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCIM_0689 class-V aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:sie04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:sie01504]
D SCIM_1412 aminoglycoside N3'-acetyltransferase homolog K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81]
D SCIM_0920 conserved hypothetical protein K18816 aac6-I; aminoglycoside 6'-N-acetyltransferase I [EC:2.3.1.82]
D SCIM_0382 aminoglycoside phosphotransferase homolog K00897 aphA; kanamycin kinase [EC:2.7.1.95]
D SCIM_0929 ABC transporter homolog K18216 steA; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SCIM_0928 ABC transporter homolog K18217 steB; ATP-binding cassette, subfamily B, tetracycline resistant protein
D SCIM_1344 D-alanyl-D-alanine carboxypeptidase homolog K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D SCIM_1659 dltA; D-alanine-D-alanyl carrier protein ligase K03367 dltA; D-alanine--poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13]
D SCIM_1658 dltB; D-alanyl transfer protein K03739 dltB; membrane protein involved in D-alanine export
D SCIM_1657 dltD; undecaprenol-phosphate-poly-(glycerophosphate subunit) D-alanine transfer protein K03740 dltD; D-alanine transfer protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:sie03100]
D SCIM_tRNA01 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SCIM_tRNA22 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SCIM_tRNA43 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SCIM_tRNA64 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SCIM_tRNA67 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA09 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA34 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA56 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA35 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA27 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA30 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SCIM_tRNA23 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SCIM_tRNA65 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SCIM_tRNA03 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SCIM_tRNA41 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SCIM_tRNA62 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SCIM_tRNA19 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SCIM_tRNA29 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SCIM_tRNA46 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SCIM_tRNA66 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SCIM_tRNA07 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SCIM_tRNA37 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SCIM_tRNA58 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SCIM_tRNA16 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SCIM_tRNA47 tRNA-His K14226 tRNA-His; tRNA His
D SCIM_tRNA17 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SCIM_tRNA45 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA25 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA05 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA60 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA39 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA24 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA08 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA57 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA36 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA21 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SCIM_tRNA04 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SCIM_tRNA40 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SCIM_tRNA61 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SCIM_tRNA44 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SCIM_tRNA14 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA51 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA11 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA54 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA12 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA53 tRNA-Met K14230 tRNA-Met; tRNA Met
D SCIM_tRNA15 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SCIM_tRNA50 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SCIM_tRNA10 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SCIM_tRNA33 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SCIM_tRNA55 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SCIM_tRNA13 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA52 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA18 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA20 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA32 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SCIM_tRNA06 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA59 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA38 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA26 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA31 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SCIM_tRNA48 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D SCIM_tRNA49 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SCIM_tRNA28 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SCIM_tRNA02 tRNA-Val K14237 tRNA-Val; tRNA Val
D SCIM_tRNA63 tRNA-Val K14237 tRNA-Val; tRNA Val
D SCIM_tRNA42 tRNA-Val K14237 tRNA-Val; tRNA Val
D SCIM_rRNA01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA12 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA09 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SCIM_rRNA02 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA11 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA08 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SCIM_rRNA03 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA10 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA06 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SCIM_rRNA07 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
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A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D SCIM_1356 gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D SCIM_1700 conserved hypothetical protein K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D SCIM_0364 nox1; NADH oxidase K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D SCIM_0208 msrA; peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D SCIM_0840 peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D SCIM_0363 ahpC; alkyl hydroperoxidase K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D SCIM_1091 thioredoxin reductase K21567 fnr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D SCIM_1583 nrdG; anaerobic ribonucleotide triphosphate reductase activator protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D SCIM_0424 pflA; pyruvate formate-lyase-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D SCIM_0556 pyruvate formate lyase 3 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D SCIM_0635 glycyl-radical enzyme activating protein K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-]
D SCIM_0361 conserved hypothetical protein K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D SCIM_1080 acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D SCIM_1435 GNAT family acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D SCIM_0877 CysE family acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D SCIM_1012 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D SCIM_0848 thiamine biosynthesis lipoprotein homolog K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SCIM_0330 dihydroxyacetone kinase family protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D SCIM_0687 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D SCIM_0999 conserved hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D SCIM_1013 ptsK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D SCIM_1005 estA; tributyrin esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D SCIM_1581 phosphotyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D SCIM_1274 HAD hydrolase superfamily homolog K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D SCIM_1679 RecJ-like phosphoesterase K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D SCIM_0140 tatD; TatD family deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D SCIM_0141 ribonuclease M5 K05985 rnmV; ribonuclease M5 [EC:3.1.26.8]
D SCIM_0234 amyA; glucan 1,6-alpha-glucosidase K01215 dexB; glucan 1,6-alpha-glucosidase [EC:3.2.1.70]
D SCIM_1354 glucuronyl hydrolase K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D SCIM_0514 dacA; DD-carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
D SCIM_1314 peptide deformylase homolog K01462 PDF; peptide deformylase [EC:3.5.1.88]
D SCIM_1399 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D SCIM_0987 conserved hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D SCIM_1186 conserved hypothetical protein K17758 nnrD; ADP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.136]
D SCIM_1362 hyaluronate lyase precursor K01727 hysA; hyaluronate lyase [EC:4.2.2.1]
D SCIM_0634 formate C-acetyltransferase K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4]
D SCIM_0534 pacL; E1-E2 family cation-transporting ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D SCIM_1651 cadmium-translocating P-type ATPase homolog K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D SCIM_0433 cation transport ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
D SCIM_0485 cation transport ATPase homolog K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
D SCIM_0582 ctpE; metal cation transporting P-type ATPase K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D SCIM_0441 conserved hypothetical protein K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D SCIM_0345 nifU; NifU family protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D SCIM_0832 class I pyridine nucleotide-disulfide oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
D SCIM_1085 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D SCIM_1168 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
D SCIM_1625 ribonucleotide reductase NrdI family protein homolog K03647 nrdI; protein involved in ribonucleotide reduction
D SCIM_1100 endA; DNA-entry nuclease K15051 endA; DNA-entry nuclease
D SCIM_0748 conserved hypothetical protein K15051 endA; DNA-entry nuclease
C 99985 Amino acid metabolism
D SCIM_0640 ethanolamine utilization protein EutJ K04024 eutJ; ethanolamine utilization protein EutJ
D SCIM_0642 transcriptional regulator K04030 eutQ; ethanolamine utilization protein EutQ
D SCIM_0636 ethanolamine utilization protein EutS K04031 eutS; ethanolamine utilization protein EutS
D SCIM_0412 pyridoxal 5'-phosphate-dependent enzymes class III K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D SCIM_1049 arsC; arsenate reductase K16509 spxA; regulatory protein spx
D SCIM_1595 transcriptional regulator Spx K16509 spxA; regulatory protein spx
D SCIM_1016 tex; transcriptional accessory ribonuclease K06959 tex; protein Tex
C 99974 Translation
D SCIM_0378 RNA binding protein K07570 GSP13; general stress protein 13
C 99975 Protein processing
D SCIM_1330 ropA; trigger factor K03545 tig; trigger factor
D SCIM_0914 smpB; VacB-like protein K03664 smpB; SsrA-binding protein
D SCIM_0340 mecA; adapter protein mecA K16511 mecA1_2; adapter protein MecA 1/2
C 99976 Replication and repair
D SCIM_1200 methylated DNA-protein-cysteine methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D SCIM_1039 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D SCIM_0148 rmuC; competence-induced protein Ccs50 K09760 rmuC; DNA recombination protein RmuC
D SCIM_1138 conserved hypothetical protein K07461 K07461; putative endonuclease
D SCIM_0876 smf; DNA processing Smf protein K04096 smf; DNA processing protein
D SCIM_1093 dnaD; DNA replication protein DnaD K02086 dnaD; DNA replication protein
D SCIM_1438 cshA; chromosome segregation helicase K07478 ycaJ; putative ATPase
D SCIM_1426 integrase catalytic region homolog K07482 K07482; transposase, IS30 family
D SCIM_1371 transposase for insertion sequence IS905B K07493 K07493; putative transposase
D SCIM_1407 OrfB of transposon ISSsa2 K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D SCIM_0174 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D SCIM_0351 cycA; amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D SCIM_0468 cationic amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D SCIM_0837 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
C 99978 Cell growth
D SCIM_0362 conserved hypothetical protein K20073 mapZ; mid-cell-anchored protein Z
D SCIM_1392 conserved hypothetical protein K06330 cotH; spore coat protein H
D SCIM_0137 jag; Jag family RNA-binding protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D SCIM_0405 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D SCIM_0934 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D SCIM_0599 lysozyme M1 K07273 acm; lysozyme
C 99994 Others
D SCIM_1040 phoU; phosphate transport system regulatory protein K02039 phoU; phosphate transport system protein
D SCIM_0887 cutC; copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D SCIM_0522 coiA; competence protein homolog K06198 coiA; competence protein CoiA
D SCIM_1466 phenylalanyl-tRNA synthetase beta subunit K06878 K06878; tRNA-binding protein
D SCIM_1676 conserved hypothetical protein K07025 K07025; putative hydrolase of the HAD superfamily
D SCIM_1133 conserved hypothetical protein K09014 sufB; Fe-S cluster assembly protein SufB
D SCIM_0343 ABC-type FE-S cluster assembly transporter permease component K09015 sufD; Fe-S cluster assembly protein SufD
D SCIM_0901 ribonuclease BN homolog K07058 K07058; membrane protein
D SCIM_1241 LemA protein K03744 lemA; LemA protein
D SCIM_1015 conserved hypothetical protein K03095 sprL; SprT-like protein
D SCIM_0283 dedA; DedA protein K03975 dedA; membrane-associated protein
D SCIM_1673 conserved hypothetical protein K01421 yhgE; putative membrane protein
D SCIM_0581 conserved hypothetical protein K08974 K08974; putative membrane protein
D SCIM_1018 conserved hypothetical protein K08986 ycgQ; putative membrane protein
D SCIM_0704 phnA; PhnA protein K06193 phnA; protein PhnA
C 99997 Function unknown
D SCIM_0532 conserved hypothetical protein K06885 K06885; uncharacterized protein
D SCIM_1180 conserved hypothetical protein K06889 K06889; uncharacterized protein
D SCIM_1215 conserved hypothetical protein K06890 K06890; uncharacterized protein
D SCIM_1561 conserved hypothetical protein K06929 K06929; uncharacterized protein
D SCIM_1216 HD superfamily metal-dependent phosphohydrolase K06950 K06950; uncharacterized protein
D SCIM_0423 extracellular nuclease K07004 K07004; uncharacterized protein
D SCIM_0896 conserved hypothetical protein K07035 K07035; uncharacterized protein
D SCIM_1017 permease K07089 K07089; uncharacterized protein
D SCIM_0619 putative transport protein K07090 K07090; uncharacterized protein
D SCIM_1211 conserved hypothetical protein K07095 K07095; uncharacterized protein
D SCIM_0890 biotin repressor family transcriptional regulator K07105 K07105; uncharacterized protein
D SCIM_1070 conserved hypothetical protein K07124 K07124; uncharacterized protein
D SCIM_1199 Fe-S oxidoreductase K07139 K07139; uncharacterized protein
D SCIM_0384 conserved hypothetical protein K09155 K09155; uncharacterized protein
D SCIM_1347 conserved hypothetical protein K09157 K09157; uncharacterized protein
D SCIM_0567 conserved hypothetical protein K09704 K09704; uncharacterized protein
D SCIM_0867 conserved hypothetical protein K09787 K09787; uncharacterized protein
D SCIM_0678 conserved hypothetical protein K09790 K09790; uncharacterized protein
D SCIM_0491 conserved hypothetical protein K00243 K00243; uncharacterized protein
D SCIM_0800 conserved hypothetical protein K09861 K09861; uncharacterized protein
D SCIM_0055 conserved hypothetical protein K09962 K09962; uncharacterized protein
D SCIM_0072 conserved hypothetical protein K09963 K09963; uncharacterized protein
D SCIM_0694 conserved hypothetical protein K07584 ysxB; uncharacterized protein
D SCIM_0380 conserved hypothetical protein K07586 ygaC; uncharacterized protein
D SCIM_0304 conserved hypothetical protein K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 20, 2024