+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Ruegeria pomeroyi

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D SPO3198 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C SPO0691 era; GTP-binding protein Era K03595 era; GTPase C SPO1986 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C SPO2511 dnaK suppressor protein, putative K06204 dksA; RNA polymerase-binding transcription factor C SPO2248 dnaK suppressor protein, putative K06204 dksA; RNA polymerase-binding transcription factor C SPO0063 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA C SPO1763 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C SPO3516 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D SPO2458 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D SPO3376 ribosomal RNA small subunit methyltransferase B, putative K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SPO2037 NOL1/NOP2/sun family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SPO3655 methyltransferase, putative K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D SPO3738 methyltransferase, putative K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D SPO3629 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D SPO0002 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D SPO1179 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D SPO0399 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D SPO1150 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D SPO1858 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D SPO0220 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D SPO2520 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D SPO0421 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D SPO3346 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SPO0029 rumA; 23S rRNA (Uracil-5-)-methyltransferase rumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D SPO3392 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D SPO2984 RNA pseudouridylate synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SPO0516 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D SPO1408 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SPO2124 RNA pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] B ribosomal protein modification factors C SPO0380 ribosomal-protein-alanine acetyltransferase, putative K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SPO3069 ribosomal-protein-alanine acetyltransferase, putative K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C SPO3255 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C SPO0944 RNA modification enzyme, MiaB-family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C SPO3120 ribosomal protein L11 methyltransferase, putative K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C SPO3198 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C SPO1893 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] C SPO2350 putative protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C SPO3833 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C SPO0691 era; GTP-binding protein Era K03595 era; GTPase C SPO2565 GTPase, putative K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C SPO2328 engA; GTP-binding protein EngA K03977 engA; GTPase C SPO1986 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-] C SPO2080 hflX; GTP-binding protein HflX K03665 hflX; GTPase B Other maturation factors C SPO0297 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C SPO3203 guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C SPO3835 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C SPO0064 hypothetical protein K09748 rimP; ribosome maturation factor RimP C SPO0219 iojap-related protein K09710 ybeB; ribosome-associated protein C SPOA0008 putative protein TIGR00043 K07042 ybeY; probable rRNA maturation factor C SPO0078 ribosomal subunit interface protein, putative K05808 hpf; ribosome hibernation promoting factor C SPO0817 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024