+E Ribosome biogenesis KO
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Ribosome Biogenesis - Ruegeria pomeroyi
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SPO3198 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SPO0691 era; GTP-binding protein Era K03595 era; GTPase
C SPO1986 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SPO2511 dnaK suppressor protein, putative K06204 dksA; RNA polymerase-binding transcription factor
C SPO2248 dnaK suppressor protein, putative K06204 dksA; RNA polymerase-binding transcription factor
C SPO0063 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C SPO1763 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C SPO3516 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SPO2458 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SPO3376 ribosomal RNA small subunit methyltransferase B, putative K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SPO2037 NOL1/NOP2/sun family protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SPO3655 methyltransferase, putative K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SPO3738 methyltransferase, putative K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SPO3629 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SPO0002 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SPO1179 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SPO0399 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D SPO1150 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SPO1858 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D SPO0220 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SPO2520 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SPO0421 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D SPO3346 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SPO0029 rumA; 23S rRNA (Uracil-5-)-methyltransferase rumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SPO3392 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SPO2984 RNA pseudouridylate synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SPO0516 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D SPO1408 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SPO2124 RNA pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C SPO0380 ribosomal-protein-alanine acetyltransferase, putative K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SPO3069 ribosomal-protein-alanine acetyltransferase, putative K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C SPO3255 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C SPO0944 RNA modification enzyme, MiaB-family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C SPO3120 ribosomal protein L11 methyltransferase, putative K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C SPO3198 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SPO1893 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
C SPO2350 putative protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C SPO3833 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C SPO0691 era; GTP-binding protein Era K03595 era; GTPase
C SPO2565 GTPase, putative K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SPO2328 engA; GTP-binding protein EngA K03977 engA; GTPase
C SPO1986 GTP-binding protein, GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-]
C SPO2080 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C SPO0297 Sua5/YciO/YrdC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SPO3203 guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SPO3835 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SPO0064 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C SPO0219 iojap-related protein K09710 ybeB; ribosome-associated protein
C SPOA0008 putative protein TIGR00043 K07042 ybeY; probable rRNA maturation factor
C SPO0078 ribosomal subunit interface protein, putative K05808 hpf; ribosome hibernation promoting factor
C SPO0817 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024