+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sphingobium indicum B90A

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SIDU_05140 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SIDU_05570 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SIDU_12885 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SIDU_15335 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SIDU_05155 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D SIDU_13685 S1/P1 Nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] D SIDU_13920 S1/P1 Nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D SIDU_14985 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SIDU_03030 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SIDU_15840 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SIDU_05140 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SIDU_01430 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SIDU_05570 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SIDU_12885 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SIDU_04410 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SIDU_10490 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SIDU_05670 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SIDU_09810 DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SIDU_15335 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SIDU_15530 hypothetical protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SIDU_09720 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SIDU_05155 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SIDU_01485 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SIDU_15860 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SIDU_13045 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SIDU_06470 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SIDU_13505 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SIDU_08405 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A E SIDU_13295 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SIDU_04095 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SIDU_04630 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SIDU_12025 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SIDU_13505 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SIDU_06470 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SIDU_09155 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SIDU_09160 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SIDU_13980 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SIDU_10180 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SIDU_07505 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SIDU_15880 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SIDU_05390 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SIDU_16130 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SIDU_13595 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SIDU_05645 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SIDU_09525 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SIDU_02385 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SIDU_15560 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SIDU_06320 DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SIDU_15735 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SIDU_04505 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SIDU_06470 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SIDU_04630 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SIDU_12025 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SIDU_17435 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SIDU_14285 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SIDU_14615 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SIDU_03375 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SIDU_13925 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SIDU_17370 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SIDU_14185 DNA mismatch repair protein Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] E SIDU_01980 DNA mismatch repair protein Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SIDU_13300 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E SIDU_15275 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SIDU_15265 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SIDU_13660 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SIDU_01435 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SIDU_12040 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SIDU_13300 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E SIDU_08980 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E SIDU_09595 recombinase RecF K03629 recF; DNA replication and repair protein RecF E SIDU_07495 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SIDU_13045 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SIDU_04185 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SIDU_02740 recombination protein RecR K06187 recR; recombination protein RecR E SIDU_06490 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SIDU_15275 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SIDU_15265 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SIDU_13660 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E SIDU_06380 DNA helicase UvrD K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SIDU_06385 double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SIDU_12040 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E SIDU_09115 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E SIDU_07845 DNA repair protein K10979 ku; DNA end-binding protein Ku E SIDU_07840 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SIDU_04710 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SIDU_15525 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SIDU_05765 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F SIDU_10070 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SIDU_04520 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F SIDU_18005 integration host factor K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SIDU_06125 hypothetical protein K07455 recT; recombination protein RecT F SIDU_13045 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SIDU_04185 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SIDU_02740 recombination protein RecR K06187 recR; recombination protein RecR F SIDU_06470 aromatic ring-opening dioxygenase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SIDU_13170 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F SIDU_04590 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F SIDU_17105 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SIDU_08405 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A F SIDU_13295 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SIDU_16045 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SIDU_13300 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D SIDU_09615 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D SIDU_06490 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SIDU_08530 hypothetical protein K14160 imuA; protein ImuA D SIDU_08525 nucleotidyltransferase K14161 imuB; protein ImuB D SIDU_08520 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SIDU_17435 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SIDU_14285 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SIDU_14615 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SIDU_03375 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SIDU_13925 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SIDU_17370 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SIDU_13555 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SIDU_13185 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D SIDU_15675 DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D SIDU_14985 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SIDU_03030 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SIDU_15840 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SIDU_13090 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SIDU_13100 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024