+F Repair protein KO #

  DNA Repair and Recombination Proteins - Shewanella japonica

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SJ2017_2810 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SJ2017_0874 FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SJ2017_1165 Deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SJ2017_1092 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SJ2017_1307 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SJ2017_1877 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D SJ2017_3709 S1/P1 Nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D SJ2017_0400 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SJ2017_1946 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SJ2017_0363 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SJ2017_2810 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SJ2017_0874 FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SJ2017_1165 Deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SJ2017_0876 cryptochrome/photolyase family protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E SJ2017_1092 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SJ2017_2811 DNA-3-methyladenine glycosylase 2 K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SJ2017_1307 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SJ2017_0008 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SJ2017_0068 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SJ2017_1877 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SJ2017_2721 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SJ2017_3357 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SJ2017_2617 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SJ2017_0049 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SJ2017_0487 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SJ2017_1885 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SJ2017_2666 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SJ2017_3667 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SJ2017_0049 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SJ2017_2617 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SJ2017_4004 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SJ2017_4003 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SJ2017_3973 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SJ2017_0345 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SJ2017_2505 Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker E SJ2017_3570 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E SJ2017_1217 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E SJ2017_2412 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E SJ2017_3020 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SJ2017_2892 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SJ2017_1416 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SJ2017_0002 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SJ2017_1141 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SJ2017_1008 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SJ2017_1786 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SJ2017_4200 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SJ2017_2536 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SJ2017_1825 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SJ2017_1887 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SJ2017_2565 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SJ2017_2617 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SJ2017_3667 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SJ2017_0489 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SJ2017_3938 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SJ2017_0800 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SJ2017_1632 exodeoxyribonuclease V beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E SJ2017_1633 exodeoxyribonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E SJ2017_1631 exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SJ2017_3095 Protein RecA K03553 recA; recombination protein RecA E SJ2017_1863 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SJ2017_1864 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SJ2017_1862 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SJ2017_0430 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SJ2017_3612 Primosomal replication protein n K02686 priB; primosomal replication protein N E SJ2017_1546 primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E SJ2017_2412 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E SJ2017_2605 Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E SJ2017_1030 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E SJ2017_2606 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SJ2017_3095 Protein RecA K03553 recA; recombination protein RecA E SJ2017_3143 DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E SJ2017_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E SJ2017_0337 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SJ2017_3357 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SJ2017_1237 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SJ2017_2556 Recombination protein RecR K06187 recR; recombination protein RecR E SJ2017_3115 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E SJ2017_2875 Recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E SJ2017_1863 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SJ2017_1864 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SJ2017_1862 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E SJ2017_1673 ATP-dependent helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E SJ2017_2605 Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E SJ2017_1030 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E SJ2017_2606 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SJ2017_2126 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SJ2017_0004 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SJ2017_1654 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SJ2017_2656 DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha F SJ2017_0646 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F SJ2017_1576 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SJ2017_3357 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SJ2017_1237 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SJ2017_2556 Recombination protein RecR K06187 recR; recombination protein RecR F SJ2017_2617 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SJ2017_3773 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F SJ2017_1760 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F SJ2017_2119 Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F SJ2017_2412 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F SJ2017_2107 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SJ2017_0372 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SJ2017_0487 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SJ2017_1885 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F SJ2017_2858 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SJ2017_3188 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SJ2017_2098 XRE family transcriptional regulator K03502 umuC; DNA polymerase V D SJ2017_2097 DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D SJ2017_3095 Protein RecA K03553 recA; recombination protein RecA D SJ2017_0197 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D SJ2017_3115 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D SJ2017_1549 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D SJ2017_0489 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SJ2017_2318 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SJ2017_3807 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D SJ2017_2276 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D SJ2017_1548 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SJ2017_0400 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SJ2017_1946 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SJ2017_0363 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SJ2017_2129 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SJ2017_2130 Ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024