+D Transcription factors KO #

  Transcription Factors - Shewanella khirikhana

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D STH12_03993 bspRIM_1; Modification methylase BspRI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D STH12_04082 bspRIM_2; Modification methylase BspRI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D STH12_02745 rhaR; HTH-type transcriptional activator RhaR K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D STH12_02787 melR; Melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D STH12_03732 rob; Right origin-binding protein K13652 K13652; AraC family transcriptional regulator D STH12_03588 tetD; Transposon Tn10 TetD protein K13653 K13653; AraC family transcriptional regulator D STH12_01944 alkA; DNA-3-methyladenine glycosylase 2 K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D STH12_00311 cdhR_1; HTH-type transcriptional regulator CdhR K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA C LysR family D STH12_02208 gcvA_1; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D STH12_03277 gcvA_3; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D STH12_03292 gcvA_4; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D STH12_03492 gcvA_5; Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D STH12_03210 cmpR_2; HTH-type transcriptional activator CmpR K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D STH12_02518 hcaR_1; Hca operon transcriptional activator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D STH12_00400 nhaR; Transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D STH12_00390 oxyR_1; Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D STH12_02895 iciA; Chromosome initiation inhibitor K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D STH12_00894 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D STH12_00567 dmlR_3; HTH-type transcriptional regulator DmlR K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator D STH12_01294 catM; HTH-type transcriptional regulator CatM K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D STH12_00230 cmpR_1; HTH-type transcriptional activator CmpR K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D STH12_01687 yofA; HTH-type transcriptional regulator YofA K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D STH12_00755 srlR_1; Glucitol operon repressor K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor C LacI family D STH12_00096 malI; Maltose regulon regulatory protein MalI K02529 galR; LacI family transcriptional regulator, galactose operon repressor D STH12_00465 exuR; putative HTH-type transcriptional repressor ExuR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D STH12_00972 galR; HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D STH12_03750 yvoA; HTH-type transcriptional repressor YvoA K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D STH12_01613 fadR; Fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D STH12_04072 pdhR; Pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D STH12_03194 putative HTH-type transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D STH12_04012 slmA; Nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D STH12_00316 DNA-binding transcriptional repressor AcrR K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D STH12_00637 bdcR; HTH-type transcriptional repressor BdcR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D STH12_02183 comR; HTH-type transcriptional repressor ComR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D STH12_03095 nemR; HTH-type transcriptional repressor NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D STH12_03832 acuR; Transcriptional regulator AcuR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D STH12_02119 ttgW; putative HTH-type transcriptional regulator TtgW K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D STH12_03880 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D STH12_00137 asnC_1; Regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D STH12_01454 lrp_1; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D STH12_03355 lrp_2; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D STH12_03400 lrp_3; Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D STH12_00237 nreC_1; Oxygen regulatory protein NreC K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D STH12_01083 csgD_1; CsgBAC operon transcriptional regulatory protein K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation C MarR family D STH12_00161 ohrR_1; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D STH12_03591 ohrR_2; Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D STH12_00956 hmrR; HTH-type transcriptional regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D STH12_04097 zntR_2; HTH-type transcriptional regulator ZntR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D STH12_01065 fur; Ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family C CRP/FNR family D STH12_02916 crp; cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D STH12_01479 fnr_1; Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D STH12_02577 fnr_2; Anaerobic regulatory protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D STH12_00861 iscR; HTH-type transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D STH12_03711 nsrR; HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D STH12_03077 aseR; HTH-type transcriptional repressor AseR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D STH12_00447 ygaV_1; putative HTH-type transcriptional regulator YgaV K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D STH12_03689 ygaV_2; putative HTH-type transcriptional regulator YgaV K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family D STH12_03747 lineage-specific thermal regulator protein K10947 K10947; PadR family transcriptional regulator C Other families D STH12_01495 ybbH; putative HTH-type transcriptional regulator YbbH K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D STH12_03271 blaI; Penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D STH12_03892 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D STH12_03146 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D STH12_00430 trpR; Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D STH12_00980 DNA-binding transcriptional regulator Nlp K07724 ner; Ner family transcriptional regulator D STH12_04255 higA; Antitoxin HigA K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D STH12_02067 ntrC_2; Nitrogen assimilation regulatory protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D STH12_03372 acoR; Acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D STH12_01763 ntrC_1; Nitrogen assimilation regulatory protein K11908 vasH; sigma-54 dependent transcriptional regulator D STH12_02437 ntrC_3; Nitrogen assimilation regulatory protein K11908 vasH; sigma-54 dependent transcriptional regulator D STH12_00252 norR; Anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D STH12_02713 fhlA; Formate hydrogenlyase transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator D STH12_03152 cdaR; Carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator D STH12_02409 helix-turn-helix protein K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D STH12_04230 metJ; Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D STH12_02568 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D STH12_02339 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D STH12_03643 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D STH12_02031 rfaH; Transcription antitermination protein RfaH K05785 rfaH; transcriptional antiterminator RfaH D STH12_00202 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D STH12_01970 tyrR; Transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D STH12_01599 gcvR; Glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D STH12_00803 pspF; Psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D STH12_00806 pspC; Phage shock protein C K03973 pspC; phage shock protein C D STH12_01064 rnk; Regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D STH12_01333 paiB; Protease synthase and sporulation protein PAI 2 K07734 paiB; transcriptional regulator D STH12_02254 hypothetical protein K07735 algH; putative transcriptional regulator D STH12_00301 dksA_1; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D STH12_00556 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D STH12_04035 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 3, 2025 #
Classification taken and modified from TRANSFAC 7.0