+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Serpula lacrymans
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E SERLADRAFT_351066 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E SERLADRAFT_471848 hypothetical protein K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E SERLADRAFT_451075 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E SERLADRAFT_475657 hypothetical protein K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
E SERLADRAFT_470739 hypothetical protein K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74]
D Cap binding complex
E SERLADRAFT_413643 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E SERLADRAFT_475254 hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E SERLADRAFT_471586 hypothetical protein K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
D Pre-mRNA cleavage factor IIm (CFIIm)
E SERLADRAFT_372905 hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E SERLADRAFT_447029 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E SERLADRAFT_445076 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E SERLADRAFT_447017 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E SERLADRAFT_437559 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SERLADRAFT_453661 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E SERLADRAFT_442294 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E SERLADRAFT_444725 hypothetical protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E SERLADRAFT_440426 hypothetical protein K15541 MPE1; protein MPE1
E SERLADRAFT_363016 hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E SERLADRAFT_390288 hypothetical protein K14962 WDR82; COMPASS component SWD2
E SERLADRAFT_344371 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SERLADRAFT_457622 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E SERLADRAFT_382815 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E SERLADRAFT_446303 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E SERLADRAFT_451042 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E SERLADRAFT_394784 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E SERLADRAFT_465253 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E SERLADRAFT_382079 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
E SERLADRAFT_460722 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
E SERLADRAFT_447017 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E SERLADRAFT_437559 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E SERLADRAFT_451042 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E SERLADRAFT_366664 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
D N6-methyltransferase complex
E SERLADRAFT_335862 hypothetical protein K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E SERLADRAFT_434451 hypothetical protein K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
D Poly(A) addition factors
E SERLADRAFT_367679 hypothetical protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
C Other processing factors
D SERLADRAFT_479812 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D SERLADRAFT_460139 hypothetical protein K27103 SRRT; serrate RNA effector molecule
D SERLADRAFT_414377 hypothetical protein K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E SERLADRAFT_476912 hypothetical protein K12876 RBM8A; RNA-binding protein 8A
E SERLADRAFT_394050 hypothetical protein K12877 MAGOH; protein mago nashi
E SERLADRAFT_457577 hypothetical protein K12881 THOC4; THO complex subunit 4
E SERLADRAFT_457816 hypothetical protein K12881 THOC4; THO complex subunit 4
E SERLADRAFT_458167 hypothetical protein K12881 THOC4; THO complex subunit 4
E SERLADRAFT_458898 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E SERLADRAFT_461600 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SERLADRAFT_369541 hypothetical protein K25178 CCDC174; coiled-coil domain-containing protein 174
E SERLADRAFT_367596 hypothetical protein K14324 SAP18; histone deacetylase complex subunit SAP18
E SERLADRAFT_460616 hypothetical protein K14325 RNPS1; RNA-binding protein with serine-rich domain 1
D TREX complex
E SERLADRAFT_461625 hypothetical protein K12880 THOC3; THO complex subunit 3
E SERLADRAFT_457577 hypothetical protein K12881 THOC4; THO complex subunit 4
E SERLADRAFT_457816 hypothetical protein K12881 THOC4; THO complex subunit 4
E SERLADRAFT_458167 hypothetical protein K12881 THOC4; THO complex subunit 4
E SERLADRAFT_382585 hypothetical protein K13174 THOC5; THO complex subunit 5
E SERLADRAFT_406806 hypothetical protein K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E SERLADRAFT_390420 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E SERLADRAFT_371328 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E SERLADRAFT_480385 hypothetical protein K16466 CETN3; centrin-3
E SERLADRAFT_471836 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E SERLADRAFT_468460 hypothetical protein K14298 RAE1; mRNA export factor
E SERLADRAFT_471545 hypothetical protein K14004 SEC13; protein transport protein SEC13
E SERLADRAFT_477215 hypothetical protein K14304 NUP85; nuclear pore complex protein Nup85
E SERLADRAFT_460912 hypothetical protein K14306 NUP62; nuclear pore complex protein Nup62
E SERLADRAFT_453453 hypothetical protein K14309 NUP93; nuclear pore complex protein Nup93
E SERLADRAFT_433747 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E SERLADRAFT_450816 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E SERLADRAFT_451525 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E SERLADRAFT_441822 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188
E SERLADRAFT_444392 hypothetical protein K14312 NUP155; nuclear pore complex protein Nup155
E SERLADRAFT_413403 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E SERLADRAFT_438015 hypothetical protein K14307 NUPL1; nucleoporin p58/p45
E SERLADRAFT_478636 hypothetical protein K14315 NDC1; nucleoporin NDC1
E SERLADRAFT_456666 hypothetical protein K14299 SEH1; nucleoporin SEH1
E SERLADRAFT_446672 hypothetical protein K18719 NUP82; nucleoporin NUP82
E SERLADRAFT_480385 hypothetical protein K16466 CETN3; centrin-3
E SERLADRAFT_467421 hypothetical protein K14284 NXF; nuclear RNA export factor
E SERLADRAFT_455145 hypothetical protein K14285 NXT1_2; NTF2-related export protein 1/2
E SERLADRAFT_412493 hypothetical protein K18725 POM152; nucleoporin POM152
D Ran-mediated transport factors
E SERLADRAFT_481041 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran
E SERLADRAFT_450489 hypothetical protein K18726 FAF2; FAS-associated factor 2
E SERLADRAFT_357339 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
E SERLADRAFT_372744 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E SERLADRAFT_351804 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E SERLADRAFT_477241 hypothetical protein K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E SERLADRAFT_417438 hypothetical protein K14290 XPO1; exportin-1
E SERLADRAFT_450362 hypothetical protein K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E SERLADRAFT_454670 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SERLADRAFT_457257 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SERLADRAFT_472770 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SERLADRAFT_461339 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SERLADRAFT_476444 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SERLADRAFT_463384 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SERLADRAFT_436211 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SERLADRAFT_468158 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E SERLADRAFT_433578 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SERLADRAFT_444703 ATP-dependent RNA helicase K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E SERLADRAFT_367005 hypothetical protein K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
E SERLADRAFT_475582 hypothetical protein K07575 MCTS; malignant T-cell-amplified sequence
E SERLADRAFT_480368 hypothetical protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E SERLADRAFT_435376 hypothetical protein K14294 WIBG; partner of Y14 and mago
E SERLADRAFT_477818 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E SERLADRAFT_460308 hypothetical protein K14416 HBS1; elongation factor 1 alpha-like protein
E SERLADRAFT_447035 hypothetical protein K06965 PELO; protein pelota
E SERLADRAFT_467667 ATP-dependent RNA helicase K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E SERLADRAFT_451634 hypothetical protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E SERLADRAFT_466369 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E SERLADRAFT_354897 hypothetical protein K11493 RCC1; regulator of chromosome condensation
E SERLADRAFT_451016 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E SERLADRAFT_357568 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E SERLADRAFT_447127 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3
E SERLADRAFT_448582 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E SERLADRAFT_436716 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E SERLADRAFT_467271 hypothetical protein K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E SERLADRAFT_455450 hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E SERLADRAFT_473187 hypothetical protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E SERLADRAFT_452105 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E SERLADRAFT_465501 hypothetical protein K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E SERLADRAFT_356787 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E SERLADRAFT_455154 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E SERLADRAFT_398361 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E SERLADRAFT_451576 hypothetical protein K10357 MYO5; myosin V
E SERLADRAFT_478548 hypothetical protein K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E SERLADRAFT_458623 hypothetical protein K03231 EEF1A; elongation factor 1-alpha
E SERLADRAFT_400352 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E SERLADRAFT_346957 hypothetical protein K18748 SSD1; protein SSD1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E SERLADRAFT_440858 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SERLADRAFT_461083 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SERLADRAFT_447829 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SERLADRAFT_362489 hypothetical protein K11593 ELF2C; eukaryotic translation initiation factor 2C
E SERLADRAFT_454670 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SERLADRAFT_457257 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SERLADRAFT_472770 hypothetical protein K03259 EIF4E; translation initiation factor 4E
E SERLADRAFT_354128 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E SERLADRAFT_417700 hypothetical protein K18749 LSM14; protein LSM14
E SERLADRAFT_355237 hypothetical protein K18752 TNPO1; transportin-1
E SERLADRAFT_463302 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
D P-body specific factors
E SERLADRAFT_454632 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E SERLADRAFT_454838 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E SERLADRAFT_464832 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E SERLADRAFT_383548 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E SERLADRAFT_367910 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E SERLADRAFT_455383 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E SERLADRAFT_471211 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E SERLADRAFT_352208 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E SERLADRAFT_378975 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E SERLADRAFT_451576 hypothetical protein K10357 MYO5; myosin V
E SERLADRAFT_461863 hypothetical protein K07374 TUBA; tubulin alpha
E SERLADRAFT_461866 hypothetical protein K07374 TUBA; tubulin alpha
E SERLADRAFT_362944 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E SERLADRAFT_361993 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E SERLADRAFT_361263 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SERLADRAFT_449989 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SERLADRAFT_477907 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E SERLADRAFT_362524 topoisomerase II-associated protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E SERLADRAFT_448582 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E SERLADRAFT_436716 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
E SERLADRAFT_473371 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E SERLADRAFT_417528 hypothetical protein K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E SERLADRAFT_455426 hypothetical protein K13201 TIA1; nucleolysin TIA-1/TIAR
E SERLADRAFT_433578 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E SERLADRAFT_451892 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E SERLADRAFT_454915 hypothetical protein K03253 EIF3B; translation initiation factor 3 subunit B
E SERLADRAFT_461339 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SERLADRAFT_476444 hypothetical protein K03257 EIF4A; translation initiation factor 4A
E SERLADRAFT_461600 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E SERLADRAFT_468158 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E SERLADRAFT_463384 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SERLADRAFT_436211 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E SERLADRAFT_465902 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E SERLADRAFT_455117 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E SERLADRAFT_467421 hypothetical protein K14284 NXF; nuclear RNA export factor
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E SERLADRAFT_454632 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E SERLADRAFT_354128 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E SERLADRAFT_362524 topoisomerase II-associated protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E SERLADRAFT_454838 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E SERLADRAFT_464832 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E SERLADRAFT_383548 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E SERLADRAFT_367910 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E SERLADRAFT_455383 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E SERLADRAFT_471211 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E SERLADRAFT_352208 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E SERLADRAFT_378975 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
D Other 5'-3' decay factors
E SERLADRAFT_433284 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
C 3'-5' decay
D Core exosome factors
E SERLADRAFT_467947 hypothetical protein K07573 CSL4; exosome complex component CSL4
E SERLADRAFT_476909 hypothetical protein K03679 RRP4; exosome complex component RRP4
E SERLADRAFT_450152 hypothetical protein K03681 RRP40; exosome complex component RRP40
E SERLADRAFT_491680 exoribonuclease, exosome component 4 K11600 RRP41; exosome complex component RRP41
E SERLADRAFT_473839 hypothetical protein K12587 MTR3; exosome complex component MTR3
E SERLADRAFT_471294 hypothetical protein K12589 RRP42; exosome complex component RRP42
E SERLADRAFT_464533 hypothetical protein K12586 RRP43; exosome complex component RRP43
E SERLADRAFT_450637 hypothetical protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E SERLADRAFT_452990 hypothetical protein K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E SERLADRAFT_450051 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E SERLADRAFT_376679 hypothetical protein K12592 C1D; exosome complex protein LRP1
E SERLADRAFT_413254 hypothetical protein K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E SERLADRAFT_476100 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E SERLADRAFT_462124 hypothetical protein K12597 AIR1_2; protein AIR1/2
E SERLADRAFT_363717 ATP-dependent RNA helicase K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E SERLADRAFT_444703 ATP-dependent RNA helicase K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E SERLADRAFT_448135 superkiller protein 3 K12600 SKI3; superkiller protein 3
E SERLADRAFT_452555 hypothetical protein K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E SERLADRAFT_361263 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E SERLADRAFT_362944 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E SERLADRAFT_361993 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E SERLADRAFT_449989 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E SERLADRAFT_472778 hypothetical protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E SERLADRAFT_435668 hypothetical protein K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
E SERLADRAFT_477907 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E SERLADRAFT_473977 hypothetical protein K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E SERLADRAFT_433284 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E SERLADRAFT_444471 hypothetical protein K26109 NRDE2; nuclear exosome regulator NRDE2
E SERLADRAFT_409045 hypothetical protein K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E SERLADRAFT_462219 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E SERLADRAFT_384634 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E SERLADRAFT_480063 eno2; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E SERLADRAFT_361445 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E SERLADRAFT_463424 hypothetical protein K04043 dnaK; molecular chaperone DnaK
E SERLADRAFT_416470 hypothetical protein K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E SERLADRAFT_476909 hypothetical protein K03679 RRP4; exosome complex component RRP4
E SERLADRAFT_467947 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Cofactors
E SERLADRAFT_491680 exoribonuclease, exosome component 4 K11600 RRP41; exosome complex component RRP41
E SERLADRAFT_471294 hypothetical protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024