+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Sulfurimicrobium lacus skT11

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D SKTS_28340 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases D SKTS_00930 serine protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D SKTS_18760 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C SKTS_28330 era; GTPase Era K03595 era; GTPase C SKTS_07380 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C SKTS_18020 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor C SKTS_27220 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor C SKTS_25200 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C SKTS_04910 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C SKTS_05300 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D SKTS_34160 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D SKTS_05080 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D SKTS_00110 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SKTS_11160 SAM-dependent methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D SKTS_34020 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D SKTS_35730 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D SKTS_36740 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D SKTS_03640 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D SKTS_01330 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D SKTS_19790 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D SKTS_26480 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D SKTS_32080 rlmE; ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D SKTS_24300 rlmF; ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D SKTS_00310 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D SKTS_29950 rlmJ; ribosomal RNA large subunit methyltransferase J K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D SKTS_29050 rlmK; ribosomal RNA large subunit methyltransferase K K25136 rlmK; 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.264] D SKTS_04970 rlmL; ribosomal RNA large subunit methyltransferase L K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D SKTS_26660 rlmN; dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SKTS_27470 putative RNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D SKTS_12700 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D SKTS_26200 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D SKTS_12680 rluC; pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D SKTS_26390 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D SKTS_12240 rluE; pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D SKTS_16540 RNA-binding protein S4 K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D SKTS_17030 RNA pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C SKTS_20440 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C SKTS_32590 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C SKTS_17880 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C SKTS_28760 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C SKTS_34970 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C SKTS_21350 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C SKTS_10740 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C SKTS_28340 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3] C SKTS_12690 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12] C SKTS_00330 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C SKTS_02530 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C SKTS_16610 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] B GTPases C SKTS_28330 era; GTPase Era K03595 era; GTPase C SKTS_18730 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C SKTS_26580 der; GTPase Der K03977 engA; GTPase C SKTS_07380 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] C SKTS_09250 rbgA; ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A C SKTS_26550 hflX_1; GTPase HflX K03665 hflX; GTPase C SKTS_27420 hflX_2; GTPase HflX K03665 hflX; GTPase B Other maturation factors C SKTS_35610 tsaC; threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C SKTS_29890 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C SKTS_25180 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C SKTS_25210 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C SKTS_27920 hypothetical protein K14761 rlbA; ribosome-associated protein C SKTS_00300 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein C SKTS_04010 ybeY; endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor C SKTS_32090 hypothetical protein K07574 yhbY; RNA-binding protein C SKTS_04460 UPF0307 protein K09889 yjgA; ribosome-associated protein C SKTS_33430 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor C SKTS_34180 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase C SKTS_19830 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024