+E Transcription factors KO #

  Transcription Factors - Shewanella livingstonensis

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D EGC82_18145 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D EGC82_12435 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D EGC82_02460 AraC family transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT D EGC82_08200 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D EGC82_15395 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D EGC82_03220 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D EGC82_03380 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D EGC82_15785 gcvA; transcriptional regulator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D EGC82_18045 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D EGC82_03585 ilvY; HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D EGC82_05795 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D EGC82_16875 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D EGC82_16920 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D EGC82_14050 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D EGC82_12290 LysR family transcriptional regulator K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator D EGC82_13870 hdfR; HTH-type transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D EGC82_10690 DeoR/GlpR transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor C LacI family D EGC82_11070 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D EGC82_14755 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor C GntR family D EGC82_00520 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D EGC82_13025 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA C TetR/AcrR family D EGC82_11790 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D EGC82_02660 slmA; nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D EGC82_02330 TetR/AcrR family transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D EGC82_00680 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D EGC82_05475 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D EGC82_12390 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D EGC82_07475 TetR/AcrR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D EGC82_02440 TetR/AcrR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D EGC82_20355 TetR/AcrR family transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D EGC82_01770 fabR; HTH-type transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D EGC82_04080 asnC; transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D EGC82_12710 leucine-responsive transcriptional regulator Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D EGC82_20845 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D EGC82_21060 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D EGC82_13705 DNA-binding response regulator K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D EGC82_04645 DNA-binding response regulator K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation C MarR family D EGC82_18580 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D EGC82_04435 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D EGC82_05680 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D EGC82_16075 Cd(II)/Pb(II)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D EGC82_03985 Zn(2+)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D EGC82_11630 MerR family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D EGC82_09205 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D EGC82_04465 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D EGC82_09460 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family C CRP/FNR family D EGC82_18775 cAMP-activated global transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D EGC82_11495 fumarate/nitrate reduction transcriptional regulator Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D EGC82_08960 iscR; Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D EGC82_00815 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D EGC82_00730 ArsR family transcriptional regulator K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D EGC82_01205 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D EGC82_16645 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D EGC82_12090 MurR/RpiR family transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D EGC82_19775 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D EGC82_01830 birA; bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D EGC82_03805 DNA-binding transcriptional regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D EGC82_16720 trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D EGC82_02535 helix-turn-helix domain-containing protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D EGC82_16205 helix-turn-helix domain-containing protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D EGC82_16185 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D EGC82_07655 sigma-54-dependent Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D EGC82_18590 norR; nitric oxide reductase transcriptional regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D EGC82_20560 norR; nitric oxide reductase transcriptional regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator D EGC82_00260 PAS domain S-box protein K15836 fhlA; formate hydrogenlyase transcriptional activator D EGC82_07985 CdaR family transcriptional regulator K02647 cdaR; carbohydrate diacid regulator D EGC82_00160 transcriptional regulator K07727 K07727; putative transcriptional regulator D EGC82_18130 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator D EGC82_19355 transcriptional regulator K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D EGC82_19580 metJ; met regulon transcriptional regulator MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D EGC82_04375 putA; bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D EGC82_06410 BolA/IbaG family iron-sulfur metabolism protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D EGC82_01050 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D EGC82_16390 rfaH; transcription/translation regulatory transformer protein RfaH K05785 rfaH; transcriptional antiterminator RfaH D EGC82_18400 argR; transcriptional regulator ArgR K03402 argR; transcriptional regulator of arginine metabolism D EGC82_14675 tyrR; transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D EGC82_12250 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D EGC82_08235 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator D EGC82_08250 pspC; envelope stress response membrane protein PspC K03973 pspC; phage shock protein C D EGC82_05560 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D EGC82_02610 helix-turn-helix domain-containing protein K07733 alpA; prophage regulatory protein D EGC82_02615 AlpA family phage regulatory protein K07733 alpA; prophage regulatory protein D EGC82_18205 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein D EGC82_05920 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D EGC82_16420 YqgE/AlgH family protein K07735 algH; putative transcriptional regulator D EGC82_18695 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D EGC82_06845 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D EGC82_02750 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 17, 2025 #
Classification taken and modified from TRANSFAC 7.0