+D
#
Spliceosome - Saccharomycodes ludwigii
%
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ACommon components
B Common spliceosomal components
C Cap binding complex
D SCDLUD_002418 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
D SCDLUD_001050 hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C hnRNP proteins
C SR proteins
C General mRNP proteins
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AComplex A
B U1 snRNP components
C Sm proteins
D SCDLUD_002328 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
D SCDLUD_005073 hypothetical protein K11087 SNRPD1; small nuclear ribonucleoprotein D1
D SCDLUD_001800 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
D SCDLUD_003281 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
D SCDLUD_000021 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
D SCDLUD_000691 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
C U1 snRNP specific factors
D SCDLUD_000338 hypothetical protein K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa
C U1 related factors
D SCDLUD_002898 hypothetical protein K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D SCDLUD_003087 hypothetical protein K12821 PRPF40; pre-mRNA-processing factor 40
B U2 snRNP components
C Sm proteins
D SCDLUD_002328 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
D SCDLUD_005073 hypothetical protein K11087 SNRPD1; small nuclear ribonucleoprotein D1
D SCDLUD_001800 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
D SCDLUD_003281 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
D SCDLUD_000021 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
D SCDLUD_000691 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
C U2 snRNP specific factors
D SCDLUD_001117 hypothetical protein K11092 SNRPA1; U2 small nuclear ribonucleoprotein A'
D SCDLUD_004743 hypothetical protein K12828 SF3B1; splicing factor 3B subunit 1
D SCDLUD_002858 hypothetical protein K12832 SF3B5; splicing factor 3B subunit 5
D SCDLUD_000521 hypothetical protein K12834 PHF5A; PHD finger-like domain-containing protein 5A
C U2 related factors
D SCDLUD_001304 hypothetical protein K12836 U2AF1; splicing factor U2AF 35 kDa subunit
D SCDLUD_001002 hypothetical protein K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D SCDLUD_001023 hypothetical protein K12811 DDX46; ATP-dependent RNA helicase DDX46/PRP5 [EC:5.6.2.7]
B Other components
C Complex A specific factors
D SCDLUD_001744 hypothetical protein K13095 SF1; splicing factor 1
#
AComplex B
B U1 snRNP components
C Sm proteins
D SCDLUD_002328 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
D SCDLUD_005073 hypothetical protein K11087 SNRPD1; small nuclear ribonucleoprotein D1
D SCDLUD_001800 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
D SCDLUD_003281 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
D SCDLUD_000021 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
D SCDLUD_000691 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
C U1 snRNP specific factors
D SCDLUD_000338 hypothetical protein K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa
C U1 related factors
D SCDLUD_002898 hypothetical protein K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D SCDLUD_003087 hypothetical protein K12821 PRPF40; pre-mRNA-processing factor 40
B U2 snRNP components
C Sm proteins
D SCDLUD_002328 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
D SCDLUD_005073 hypothetical protein K11087 SNRPD1; small nuclear ribonucleoprotein D1
D SCDLUD_001800 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
D SCDLUD_003281 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
D SCDLUD_000021 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
D SCDLUD_000691 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
C U2 snRNP specific factors
D SCDLUD_001117 hypothetical protein K11092 SNRPA1; U2 small nuclear ribonucleoprotein A'
D SCDLUD_004743 hypothetical protein K12828 SF3B1; splicing factor 3B subunit 1
D SCDLUD_002858 hypothetical protein K12832 SF3B5; splicing factor 3B subunit 5
D SCDLUD_000521 hypothetical protein K12834 PHF5A; PHD finger-like domain-containing protein 5A
C U2 related factors
D SCDLUD_001304 hypothetical protein K12836 U2AF1; splicing factor U2AF 35 kDa subunit
D SCDLUD_001002 hypothetical protein K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D SCDLUD_001023 hypothetical protein K12811 DDX46; ATP-dependent RNA helicase DDX46/PRP5 [EC:5.6.2.7]
B U4/U6.U5 tri-snRNP components
C Sm proteins
D SCDLUD_002328 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
D SCDLUD_005073 hypothetical protein K11087 SNRPD1; small nuclear ribonucleoprotein D1
D SCDLUD_001800 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
D SCDLUD_003281 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
D SCDLUD_000021 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
D SCDLUD_000691 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
C LSm proteins
D SCDLUD_001600 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
D SCDLUD_004326 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
D SCDLUD_001621 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
D SCDLUD_003233 hypothetical protein K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
D SCDLUD_002851 hypothetical protein K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
D SCDLUD_004464 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
C U4/U6 snRNP specific factors
D SCDLUD_003499 hypothetical protein K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13
C U5 snRNP specific factors
D SCDLUD_003964 hypothetical protein K12853 SNU114; 114 kDa U5 small nuclear ribonucleoprotein component
D SCDLUD_004767 hypothetical protein K12856 PRPF8; pre-mRNA-processing factor 8
D SCDLUD_001674 hypothetical protein K12854 SNRNP200; pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
D SCDLUD_000546 hypothetical protein K12859 TXNL4A; U5 snRNP protein, DIM1 family
C U4/U6.U5 tri-snRNP specific factors
C U4/U6.U5 tri-snRNP related factors
D SCDLUD_002665 hypothetical protein K12848 SNU23; U4/U6.U5 tri-snRNP component SNU23
D SCDLUD_003572 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D SCDLUD_001203 hypothetical protein K12814 PRP2; pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 [EC:5.6.2.6]
B Other components
C Prp19 complex
D SCDLUD_002153 hypothetical protein K12862 PLRG1; pleiotropic regulator 1
D SCDLUD_003006 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D SCDLUD_000169 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D SCDLUD_001558 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
C Prp19-related factors
D SCDLUD_001745 hypothetical protein K12869 CRN; crooked neck
D SCDLUD_001228 hypothetical protein K12873 BUD31; bud site selection protein 31
D SCDLUD_001936 hypothetical protein K27398 CWC2; pre-mRNA-splicing factor CWC2
C RES complex
D SCDLUD_005170 hypothetical protein K13107 RBMX2; RNA-binding motif protein, X-linked 2
C Complex B specific factors
D SCDLUD_003742 hypothetical protein K13113 UBL5; ubiquitin-like protein 5
#
AComplex C
B U2 snRNP components
C Sm proteins
D SCDLUD_002328 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
D SCDLUD_005073 hypothetical protein K11087 SNRPD1; small nuclear ribonucleoprotein D1
D SCDLUD_001800 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
D SCDLUD_003281 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
D SCDLUD_000021 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
D SCDLUD_000691 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
C LSm proteins
D SCDLUD_001600 hypothetical protein K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
D SCDLUD_004326 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
C U2 SnRNP specific factors
D SCDLUD_001117 hypothetical protein K11092 SNRPA1; U2 small nuclear ribonucleoprotein A'
D SCDLUD_004743 hypothetical protein K12828 SF3B1; splicing factor 3B subunit 1
D SCDLUD_002858 hypothetical protein K12832 SF3B5; splicing factor 3B subunit 5
D SCDLUD_000521 hypothetical protein K12834 PHF5A; PHD finger-like domain-containing protein 5A
B U4/U6.U5 tri-snRNP components
C Sm proteins
D SCDLUD_002328 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
D SCDLUD_005073 hypothetical protein K11087 SNRPD1; small nuclear ribonucleoprotein D1
D SCDLUD_001800 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
D SCDLUD_003281 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
D SCDLUD_000021 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
D SCDLUD_000691 hypothetical protein K11099 SNRPG; small nuclear ribonucleoprotein G
C U5 SnRNP specific factors
D SCDLUD_003964 hypothetical protein K12853 SNU114; 114 kDa U5 small nuclear ribonucleoprotein component
D SCDLUD_001674 hypothetical protein K12854 SNRNP200; pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
D SCDLUD_004767 hypothetical protein K12856 PRPF8; pre-mRNA-processing factor 8
C U4/U6.U5 tri-SnRNP specific factors
C U4/U6.U5 tri-SnRNP related factors
D SCDLUD_002665 hypothetical protein K12848 SNU23; U4/U6.U5 tri-snRNP component SNU23
D SCDLUD_003572 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D SCDLUD_001002 hypothetical protein K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
B Other components
C Prp19-CDC5 complex
D SCDLUD_002153 hypothetical protein K12862 PLRG1; pleiotropic regulator 1
D SCDLUD_003006 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D SCDLUD_000169 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D SCDLUD_001558 hypothetical protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
C Prp19-related factors
D SCDLUD_001745 hypothetical protein K12869 CRN; crooked neck
D SCDLUD_001228 hypothetical protein K12873 BUD31; bud site selection protein 31
C RES complex
D SCDLUD_005170 hypothetical protein K13107 RBMX2; RNA-binding motif protein, X-linked 2
C EJC/TREX
D SCDLUD_002651 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
D SCDLUD_003613 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
D SCDLUD_003238 hypothetical protein K12881 THOC4; THO complex subunit 4
C Step II factors
D SCDLUD_003210 hypothetical protein K12816 CDC40; pre-mRNA-processing factor 17
D SCDLUD_005195 hypothetical protein K12818 DHX8; ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
D SCDLUD_005283 hypothetical protein K12815 DHX38; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
C PPlases
C hnRNP proteins
C Complex C specific factors
D SCDLUD_001661 hypothetical protein K13126 PABPC; polyadenylate-binding protein
#
AOther splicing related proteins
B Proteins involved in snRNP biogenesis
C SMN complex factors
C Integrator complex
C Other proteins involved in snRNP biogenesis
D SCDLUD_002162 hypothetical protein K14292 TGS1; trimethylguanosine synthase [EC:2.1.1.-]
D SCDLUD_004517 hypothetical protein K06874 ZPR1; zinc finger protein ZPR1
B Minor spliceosome components
C Minor spliceosome specific factors
C Minor spliceosome associated proteins
B Spliceosome associated proteins (SAPs)
C hnRNP proteins
C SR proteins
C SR-related proteins
C TREX complex
D SCDLUD_003238 hypothetical protein K12881 THOC4; THO complex subunit 4
D SCDLUD_002651 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
C RNA helicase-like proteins
D SCDLUD_002121 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
D SCDLUD_004729 hypothetical protein K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D SCDLUD_004839 hypothetical protein K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
C RNA binding proteins (RBPs)
D SCDLUD_001806 hypothetical protein K13199 SERBP1; plasminogen activator inhibitor 1 RNA-binding protein
C Other SAPs
D SCDLUD_003326 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
D SCDLUD_001052 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
D SCDLUD_001381 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
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ASplicing related RNAs
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 15, 2024