+F Repair protein KO #

  DNA Repair and Recombination Proteins - Serratia marcescens subsp. marcescens Db11

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SMDB11_1827 ogt; O6-methylguanine-DNA-alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SMDB11_0495 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SMDB11_3071 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SMDB11_3448 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SMDB11_1510 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SMDB11_0694 putative NUDIX-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMDB11_0085 mutT; nucleoside triphosphate pyrophosphohydrolase,marked preference for dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMDB11_2561 putative NUDIX-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMDB11_4143 putative NUDIX-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMDB11_4069 dut; deoxyuridine 5'-triphosphatenucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SMDB11_1827 ogt; O6-methylguanine-DNA-alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SMDB11_0244 fused DNA-binding transcriptionaldualregulator/O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SMDB11_0495 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SMDB11_2447 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E SMDB11_3071 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SMDB11_3534 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E SMDB11_2940 putative adaptative response regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SMDB11_3448 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SMDB11_4175 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SMDB11_4064 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SMDB11_0504 nei; endonucleaseVIII/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E SMDB11_1510 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SMDB11_1984 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SMDB11_2556 nfo; endonuclease IV with intrinsic 3'-5'exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E SMDB11_4392 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E SMDB11_3277 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SMDB11_2840 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SMDB11_4099 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SMDB11_3694 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A E SMDB11_0567 uvrB; excinuclease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B E SMDB11_1099 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SMDB11_1121 cho; excinuclease K05984 cho; excinuclease Cho [EC:3.1.25.-] E SMDB11_4290 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SMDB11_4099 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SMDB11_2840 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SMDB11_4377 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SMDB11_4378 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SMDB11_3770 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SMDB11_4080 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SMDB11_1274 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SMDB11_0143 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E SMDB11_4480 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E SMDB11_3218 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E SMDB11_2542 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E SMDB11_2992 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SMDB11_0327 xseB; exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E SMDB11_1206 exoX; exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E SMDB11_3163 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SMDB11_4152 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SMDB11_4614 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E SMDB11_0448 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SMDB11_1170 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SMDB11_0194 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SMDB11_0378 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E SMDB11_4730 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E SMDB11_1212 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] E SMDB11_2541 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E SMDB11_2840 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SMDB11_4290 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SMDB11_3693 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SMDB11_3848 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E SMDB11_2404 putative DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SMDB11_3207 recB; exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E SMDB11_3209 recC; exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E SMDB11_3206 recD; exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SMDB11_0158 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E SMDB11_2046 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA E SMDB11_2045 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SMDB11_2047 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SMDB11_4013 priA; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SMDB11_4498A priB; primosomal protein N K02686 priB; primosomal replication protein N E SMDB11_0375 priC; primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E SMDB11_2542 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E SMDB11_0299 sbcC; exonuclease, dsDNA, ATP-dependent K03546 sbcC; DNA repair protein SbcC/Rad50 E SMDB11_0300 sbcD; exonuclease, dsDNA, ATP-dependent K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SMDB11_0158 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E SMDB11_4746 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E SMDB11_4153 recF; gap repair protein K03629 recF; DNA replication and repair protein RecF E SMDB11_4083 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SMDB11_3277 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SMDB11_3054 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E SMDB11_0380 recR; recombination protein RecR K06187 recR; recombination protein RecR E SMDB11_3074 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SMDB11_0294 rdgC; DNA-binding protein, non-specific K03554 rdgC; recombination associated protein RdgC E SMDB11_2046 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA E SMDB11_2045 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SMDB11_2047 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E SMDB11_2582 putative helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E SMDB11_0299 sbcC; exonuclease, dsDNA, ATP-dependent K03546 sbcC; DNA repair protein SbcC/Rad50 E SMDB11_0300 sbcD; exonuclease, dsDNA, ATP-dependent K03547 sbcD; DNA repair protein SbcD/Mre11 E SMDB11_3832 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SMDB11_2665 gyrA; DNA gyrase type II topoisomerase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SMDB11_4154 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SMDB11_1923 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SMDB11_4394 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha F SMDB11_0345 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SMDB11_3277 recJ; ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SMDB11_3054 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F SMDB11_0380 recR; recombination protein RecR K06187 recR; recombination protein RecR F SMDB11_2840 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F SMDB11_3674 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F SMDB11_1423 ihfA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha F SMDB11_0993 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F SMDB11_2542 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F SMDB11_4296 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SMDB11_3694 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A F SMDB11_0567 uvrB; excinuclease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B F SMDB11_1975 hns; global DNA-binding transcriptional dualregulator H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SMDB11_0219 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SMDB11_2298 umuC; UmuC protein K03502 umuC; DNA polymerase V D SMDB11_2303 putative DNA polymerase V, subunit D K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D SMDB11_0158 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D SMDB11_3714 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88] D SMDB11_3074 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SMDB11_0043 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D SMDB11_3693 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SMDB11_1153 dinI; DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D SMDB11_0159 oraA; regulatory protein for RecA K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SMDB11_4260 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D SMDB11_1042 helD; helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D SMDB11_2030 probable ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D SMDB11_0730 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SMDB11_0694 putative NUDIX-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMDB11_0085 mutT; nucleoside triphosphate pyrophosphohydrolase,marked preference for dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMDB11_2561 putative NUDIX-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMDB11_4143 putative NUDIX-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SMDB11_4069 dut; deoxyuridine 5'-triphosphatenucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SMDB11_2667 nrdA; ribonucleoside diphosphate reductase 1,alphasubunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SMDB11_3113 nrdE; ribonucleoside-diphosphate reductase 2,alphasubunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SMDB11_2668 nrdB; ribonucleoside diphosphate reductase 1,betasubunit, ferritin-like protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D SMDB11_3114 nrdF; ribonucleoside-diphosphate reductase 2,betasubunit, ferritin-like protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024