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Transcription Machinery - Serratia marcescens SM39
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E SM39_3970 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E SM39_4230 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E SM39_4229 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E SM39_4526 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E SM39_3728 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
E SM39_3274 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SM39_1753 fecI; RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E SM39_2512 ECF-family RNA polymerase sigma factor K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
E SM39_4284 rpoH; RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor
E SM39_3825 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
E SM39_2395 fliA; flagellar biosynthesis sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E SM39_0044 hepA; RNA polymerase-associated helicase protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E SM39_4772 nusA; transcription termination/antitermination L factor K02600 nusA; transcription termination/antitermination protein NusA
E SM39_0378 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
E SM39_4235 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG
E SM39_3803 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
E SM39_3802 sspB; ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
E SM39_3273 rseA; anti-sigma factor K03597 rseA; sigma-E factor negative regulatory protein RseA
E SM39_3272 rseB; anti-sigma factor K03598 rseB; sigma-E factor negative regulatory protein RseB
E SM39_3271 rseC; sigma-E factor regulatory protein K03803 rseC; sigma-E factor negative regulatory protein RseC
D Transcription elongation factors
E SM39_1412 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
E SM39_pSMC1_06 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
E SM39_3580 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E SM39_4764 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA
E SM39_4074 greB; transcription elongation factor K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E SM39_4340 rho; transcription termination factor K03628 rho; transcription termination factor Rho
E SM39_3362 rof; ROF protein K19000 rof; Rho-binding antiterminator
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024