+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Scophthalmus maximus (turbot)
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 118292291 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 118290341 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 118314313 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 118290055 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 118302541 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 118302317 RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 118319039 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 118318360 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 118302561 nudt21; cleavage and polyadenylation specificity factor subunit 5 isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 118290858 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 118302355 cleavage and polyadenylation specificity factor subunit 7-like isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 118319611 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 118300212 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 118310479 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 118290323 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 118289973 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118286481 cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118288512 cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 118312627 fip1l1b; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 118310741 wdr33; pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 118310052 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 118287666 ppp1cab; protein phosphatase 1, catalytic subunit, alpha isozyme b K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118286475 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118289517 ppp1caa; protein phosphatase 1, catalytic subunit, alpha isozyme a K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118289817 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118301616 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118313464 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit A K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 118309286 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 118309079 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 118318954 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 118301789 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 118320632 sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 118309126 snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 118285184 snrpd3l; small nuclear ribonucleoprotein D3 polypeptide, like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 118309150 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 118286920 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 118316623 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 118292092 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 118319737 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 118290323 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 118289973 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118286481 cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 118318954 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 118320632 sympk; symplekin K06100 SYMPK; symplekin
E 118300249 slbp2; stem-loop binding protein 2 isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 118319970 histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 118289849 casp8ap2; CASP8-associated protein 2 isoform X2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 118300550 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 118298880 supt5h; transcription elongation factor SPT5 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 118284182 N6-adenosine-methyltransferase subunit METTL3-like K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 118291304 mettl3; N6-adenosine-methyltransferase subunit METTL3 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 118312725 mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 118287720 mettl4; N(6)-adenine-specific methyltransferase METTL4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 118296264 mettl16; RNA N6-adenosine-methyltransferase mettl16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 118290117 pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 118311653 virma; protein virilizer homolog K22910 VIRMA; protein virilizer
E 118309482 RNA-binding protein 15-like K13190 RBM15; RNA-binding protein 15
E 118316386 rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 118308993 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 118304314 zc3h13; zinc finger CCCH domain-containing protein 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 118301250 cbll1; E3 ubiquitin-protein ligase Hakai isoform X2 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 118316152 poly(A) polymerase type 3-like isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 118283674 papolg; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 118313321 tent2; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 118287276 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X1 K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 118282768 bard1; BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 118302457 rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 118302647 fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 118312729 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 118309985 tardbpb; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 118316351 tardbpa; TAR DNA binding protein, like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 118299291 dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 118292086 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 118320466 mettl8; mRNA N(3)-methylcytidine methyltransferase METTL8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 118289296 mettl22; methyltransferase-like protein 22 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 118289709 terminal nucleotidyltransferase 5A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 118313202 tent5ba; terminal nucleotidyltransferase 5ba K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 118299343 tent5aa; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 118320414 tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 118290518 zc3h14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 118300615 srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
D 118319825 serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 118285289 rbm8a; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 118318240 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 118288311 alyref; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 118313272 aly/REF export factor 2 isoform X1 K12881 THOC4; THO complex subunit 4
E 118312031 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 118309791 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 118289091 casc3; protein CASC3 isoform X1 K14323 CASC3; protein CASC3
E 118307751 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 118286200 pnn; pinin K13114 PNN; pinin
E 118287726 acin1b; apoptotic chromatin condensation inducer 1b isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 118310275 acin1a; apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 118288436 RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 118287938 RNA-binding protein with serine-rich domain 1-B-like isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 118285776 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 118310371 thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 118301556 thoc2; THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 118319667 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 118288311 alyref; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 118313272 aly/REF export factor 2 isoform X1 K12881 THOC4; THO complex subunit 4
E 118313705 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 118289158 thoc6; THO complex subunit 6 homolog isoform X1 K13175 THOC6; THO complex subunit 6
E 118308822 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 118316820 pcid2; PCI domain-containing protein 2 isoform X1 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 118314447 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 118292167 transcription and mRNA export factor ENY2-2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 118319346 cetn2; caltractin isoform X1 K10840 CETN2; centrin-2
E 118301450 cetn3; centrin-3 K16466 CETN3; centrin-3
E 118282750 germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 118311068 tpra; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 118318184 tprb; translocated promoter region b, nuclear basket protein isoform X1 K09291 TPR; nucleoprotein TPR
E 118309957 rae1; mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 118309598 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 118293303 nup37; nucleoporin Nup37 isoform X1 K14302 NUP37; nuclear pore complex protein Nup37
E 118289362 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 118290133 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 118286354 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 118284544 nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 118283040 nup62l; nucleoporin 62 like K14306 NUP62; nuclear pore complex protein Nup62
E 118299326 nup88; nucleoporin 88 K14318 NUP88; nuclear pore complex protein Nup88
E 118315662 nup93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 118300210 nup98; nuclear pore complex protein Nup98-Nup96 isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 118289787 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 118312897 nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 118285151 nup188; nucleoporin NUP188 isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 118292205 nup153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 118285182 nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 118315801 nup160; nuclear pore complex protein Nup160 isoform X1 K14303 NUP160; nuclear pore complex protein Nup160
E 118282895 nup35; nucleoporin NUP35 isoform X2 K14313 NUP35; nuclear pore complex protein Nup53
E 118314851 nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 118316823 nup210; nuclear pore membrane glycoprotein 210 isoform X1 K14314 NUP210; nuclear pore complex protein Nup210
E 118284564 nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 118300766 pom121; nuclear envelope pore membrane protein POM 121 isoform X1 K14316 POM121; nuclear pore complex protein Nup121
E 118290957 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 118318601 nup42; nucleoporin NUP42 K14321 NUPL2; nucleoporin-like protein 2
E 118310374 ndc1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 118301146 seh1l; nucleoporin SEH1 isoform X1 K14299 SEH1; nucleoporin SEH1
E 118320564 ranbp2; RANBP2-like and GRIP domain-containing protein 5/6 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 118285883 senp2; sentrin-specific protease 2 isoform X1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 118316733 aaas; aladin K14320 AAAS; aladin
E 118301450 cetn3; centrin-3 K16466 CETN3; centrin-3
E 118314633 gle1; mRNA export factor GLE1 K18723 GLE1; nucleoporin GLE1
E 118318984 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 118319509 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 118319015 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 118301970 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 118312299 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 118285088 acidic leucine-rich nuclear phosphoprotein 32 family member D K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 118317672 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 118286151 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 118317245 elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 118317910 elavl4; ELAV-like protein 4 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 118289457 elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 118318961 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 118311922 zgc:136908; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 118313821 transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 118285658 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 118312104 transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 118288969 transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 118283358 xpo1b; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 118313203 xpo1a; exportin-1 K14290 XPO1; exportin-1
E 118284841 xpo7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 118289239 rangap1a; ran GTPase-activating protein 1a isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 118287261 rangap1b; ran GTPase-activating protein 1b K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 118310949 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 118283335 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 118319301 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 118285074 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 118310391 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 118303936 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 118309485 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 118310249 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 118302963 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 118298913 eukaryotic translation initiation factor 4 gamma 1-like isoform X4 K03260 EIF4G; translation initiation factor 4G
E 118315150 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b isoform X1 K03260 EIF4G; translation initiation factor 4G
E 124850049 eukaryotic translation initiation factor 4 gamma 3-like K03260 EIF4G; translation initiation factor 4G
E 118309092 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 118298400 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 118285051 eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 118314401 eukaryotic translation initiation factor 4E-binding protein 2 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 118283421 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 118319511 eif4ebp3l; eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 118310071 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 118290028 angel2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 118286409 angel1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 118300064 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118317691 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118319277 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 118318537 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118319519 cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118300340 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 118285628 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 118300472 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118284116 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118318492 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118319564 cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118302905 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118300116 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118282889 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118300158 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118310603 gigyf2; GRB10-interacting GYF protein 2 isoform X7 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118317571 embryonic polyadenylate-binding protein-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 118291850 polyadenylate-binding protein 1A isoform X1 K13126 PABPC; polyadenylate-binding protein
E 118286185 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 118299028 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 118313487 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 118300092 paip2b; polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 118319837 polyadenylate-binding protein-interacting protein 2 isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 118291938 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 118315350 deaf1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 118319956 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 118310743 denr; density-regulated protein isoform X1 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 118287477 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 118316362 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 118317579 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118320472 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118300753 msi2b; RNA-binding protein Musashi homolog 2b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 118317788 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 118314461 msi1b; RNA-binding protein Musashi homolog 1b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 118309095 RNA-binding protein Musashi homolog 1-like K14411 MSI; RNA-binding protein Musashi
E 118290042 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 118287660 pelo; protein pelota homolog K06965 PELO; protein pelota
E 118291045 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 118302365 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 118317286 ddx19a; ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 118309035 ATP-dependent RNA helicase DDX19B isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 118288523 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 118317198 SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 118313129 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 118302700 larp6a; la-related protein 6a K18733 LARP6; la-related protein 6
E 118300458 puraa; purine-rich element binding protein Aa K21772 PURA; transcriptional activator protein Pur-alpha
E 118318972 purab; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 118300983 purbb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 118313663 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 118289376 poldip3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 118309192 zc3h11a; zinc finger CCCH domain-containing protein 11A isoform X1 K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 118309474 leng8; leukocyte receptor cluster member 8 homolog isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
E 118287651 patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 118319178 etf1a; eukaryotic peptide chain release factor subunit 1-like K03265 ETF1; peptide chain release factor subunit 1
E 118288242 gspt1l; G1 to S phase transition 1, like K03267 ERF3; peptide chain release factor subunit 3
E 118287489 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 118310784 regulator of nonsense transcripts 1-like K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 118318172 regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 118290029 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 118283023 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 118319130 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 118301163 ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 118319860 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform-like K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 118313857 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 118299655 ppp2r1bb; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 118283748 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118312880 ppp2r2ca; protein phosphatase 2, regulatory subunit B, gamma a K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118284892 ppp2r2ab; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118319337 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118319624 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118313522 ppp2r2aa; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 118320400 ppp2r3b; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 118286114 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 118286374 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 118300163 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118284148 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118290076 ppp2r5cb; protein phosphatase 2, regulatory subunit B', gamma b isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118290079 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118285914 ppp2r5eb; protein phosphatase 2, regulatory subunit B', epsilon isoform X5 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 118286095 ppp2r5ca; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 118288465 smg1; serine/threonine-protein kinase SMG1 isoform X2 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 118284992 smg5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 118300030 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 118310325 smg7; nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 118300386 smg8; nonsense-mediated mRNA decay factor SMG8 K18734 SMG8; protein SMG8
E 118300477 smg9; nonsense-mediated mRNA decay factor SMG9 isoform X1 K18735 SMG9; protein SMG9
E 118300158 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118310603 gigyf2; GRB10-interacting GYF protein 2 isoform X7 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 118302183 secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 118314613 selenocysteine insertion sequence-binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 118299630 dhx34; probable ATP-dependent RNA helicase DHX34 isoform X1 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 118288402 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 118312521 gtpbp1l; GTP binding protein 1, like K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 118285197 pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 118317883 si:dkey-110c1.10; unconventional myosin-Vb K10357 MYO5; myosin V
E 118285439 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 118302397 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 118315235 unconventional myosin-Va isoform X2 K10357 MYO5; myosin V
E 118315236 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 118315853 bicd1a; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 118310143 protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 118316650 protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 118317366 zgc:162200; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 118291617 protein bicaudal D homolog 1-like isoform X1 K18739 BICD; protein bicaudal D
D Factors that have mRNA localization signals
E 118288414 actb2; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 118311874 actb1; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 118290167 myelin basic protein-like isoform X3 K17269 MBP; myelin basic protein
E 118290320 myelin basic protein K17269 MBP; myelin basic protein
E 118292245 mbpa; uncharacterized protein mbpa isoform X1 K17269 MBP; myelin basic protein
E 118309553 desmin-like K07606 VIM; vimentin
E 118311244 vimentin A2 K07606 VIM; vimentin
E 118319119 vimr2; desmin K07606 VIM; vimentin
E 118315835 mt2; metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 118287792 myca; transcriptional regulator Myc-A isoform X1 K04377 MYC; Myc proto-oncogene protein
E 118311397 transcriptional regulator Myc-B-like isoform X1 K04377 MYC; Myc proto-oncogene protein
E 118308779 mych; myelocytomatosis oncogene homolog isoform X1 K04377 MYC; Myc proto-oncogene protein
E 118287825 tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 118285574 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 118314518 tbx16; T-box transcription factor 16 K10180 TBX6; T-box protein 6
E 118319931 nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
E 118285827 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 118290891 nanos homolog 2-like K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 118310361 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 118288965 far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 118312107 far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 118285005 fubp3; far upstream element-binding protein 3 isoform X2 K13210 FUBP; far upstream element-binding protein
E 118313842 far upstream element-binding protein 3 isoform X7 K13210 FUBP; far upstream element-binding protein
E 118287791 si:dkey-37o8.1; elongation factor 1-alpha-like isoform X1 K03231 EEF1A; elongation factor 1-alpha
E 118283427 eef1a1a; elongation factor 1-alpha 1a K03231 EEF1A; elongation factor 1-alpha
E 118312856 elongation factor 1-alpha, somatic form K03231 EEF1A; elongation factor 1-alpha
E 118291761 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 118291762 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 118291763 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 118291764 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 118318977 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 118291699 hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 118299415 agfg1a; arf-GAP domain and FG repeat-containing protein 1a isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 118311544 agfg1b; arf-GAP domain and FG repeat-containing protein 1b isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 118290930 agfg2; arf-GAP domain and FG repeat-containing protein 2 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 118310018 stau1; double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 118291549 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 118291623 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 118318065 ptbp1b; polypyrimidine tract-binding protein 1b isoform X2 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 118285727 polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 118300472 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118284116 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118318492 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118319564 cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118302905 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 118300064 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118317691 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118319277 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 118318537 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118319519 cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 118317148 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 118309155 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 118310267 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 118317059 poly(rC)-binding protein 4-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 118282966 pcbp3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 118283286 zgc:110045; poly(rC)-binding protein 3 isoform X2 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 118309055 pcbp4; poly(rC)-binding protein 4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 118302912 caprin1a; caprin-1a isoform X1 K18743 CAPRIN1; caprin-1
E 118314821 caprin1b; caprin-1b isoform X1 K18743 CAPRIN1; caprin-1
E 118317422 caprin2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 118316639 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 118310485 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 118291616 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118302226 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118291890 ago2; protein argonaute-2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118291986 ago4; protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118307152 ago1; protein argonaute-1 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 118310949 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 118283335 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 118319301 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 118285074 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 118310784 regulator of nonsense transcripts 1-like K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 118318172 regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 118300116 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118282889 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 118299908 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118312690 ddx61; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118292144 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118311423 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 118313346 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 118313855 mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 118302744 mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 118311719 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 118317072 lsm14b; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 118302681 lsm14ab; LSM14A mRNA processing body assembly factor b isoform X1 K18749 LSM14; protein LSM14
E 118314757 lsm14aa; LSM14A mRNA processing body assembly factor a K18749 LSM14; protein LSM14
E 118309377 protein LSM14 homolog B-like isoform X1 K18749 LSM14; protein LSM14
E 118317148 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 118309155 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 118316639 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 118287740 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 118316931 LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 118302097 Wilms tumor protein 1-interacting protein homolog K16682 AJUBA; LIM domain-containing protein
E 118316692 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 118313868 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 118309459 mov10a; putative helicase mov-10-B.1 isoform X1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 118283121 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 118301142 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 118288465 smg1; serine/threonine-protein kinase SMG1 isoform X2 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 118284992 smg5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 118300030 smg6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 118310325 smg7; nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 118299597 mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 118283318 zfp36l2; mRNA decay activator protein ZFP36L2 isoform X1 K18753 ZFP36L; butyrate response factor
E 118285950 zfp36l1a; mRNA decay activator protein ZFP36L1a K18753 ZFP36L; butyrate response factor
E 118299125 zgc:114130; mRNA decay activator protein ZFP36L1 isoform X1 K18753 ZFP36L; butyrate response factor
E 118300044 lin28aa; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 118311012 protein lin-28 homolog A-like K18754 LIN28; protein lin-28
E 118290583 lin28b; protein lin-28 homolog B K18754 LIN28; protein lin-28
E 118312247 htt; huntingtin isoform X6 K04533 HD; huntingtin
E 118291869 ipo8; importin-8 isoform X2 K18755 IPO8; importin-8
E 118283437 protein bicaudal C homolog 1-B-like isoform X1 K18756 BICC1; protein bicaudal C
E 118319781 bicc2; bicaudal C homolog 2 K18756 BICC1; protein bicaudal C
E 118317579 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118320472 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 118288236 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 118311088 prkacbb; protein kinase, cAMP-dependent, catalytic, beta b K04345 PKA; protein kinase A [EC:2.7.11.11]
E 118311924 prkacab; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 118318101 prkacba; protein kinase, cAMP-dependent, catalytic, beta a isoform X2 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 118301640 larp1; la-related protein 1 isoform X4 K18757 LARP1; la-related protein 1
E 118285784 larp1b; la-related protein 1B isoform X2 K18757 LARP1; la-related protein 1
E 118287649 ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 118289080 atxn2l; ataxin-2-like protein K23625 ATXN2_2L; ataxin 2/2L
E 118313791 atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 118285065 dcp2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 118316312 dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 118292774 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 118313618 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 118317904 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 118309692 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118318177 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 118291358 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 118313076 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 118318714 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 118287622 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 118299792 klc3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 118284121 klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 118284305 klc1b; kinesin light chain 1b isoform X1 K10407 KLC; kinesin light chain
E 118286043 klc1a; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 118317883 si:dkey-110c1.10; unconventional myosin-Vb K10357 MYO5; myosin V
E 118285439 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 118302397 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 118315235 unconventional myosin-Va isoform X2 K10357 MYO5; myosin V
E 118315236 myo5c; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 118300143 tubulin alpha chain isoform X1 K07374 TUBA; tubulin alpha
E 124849319 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 118316777 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 118317380 tubulin alpha chain K07374 TUBA; tubulin alpha
E 118317381 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 118317382 tubulin alpha chain K07374 TUBA; tubulin alpha
E 118317383 tuba1c; tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 118311418 tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 118311419 tubulin alpha-1C chain isoform X2 K07374 TUBA; tubulin alpha
E 118284268 tubulin alpha chain K07374 TUBA; tubulin alpha
E 118301470 tubulin alpha chain K07374 TUBA; tubulin alpha
E 118301471 tubulin alpha chain K07374 TUBA; tubulin alpha
E 118320357 tubulin alpha chain isoform X1 K07374 TUBA; tubulin alpha
E 118320358 tubulin alpha chain K07374 TUBA; tubulin alpha
E 118320359 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 118317094 tuba5; tubulin alpha 5 K07374 TUBA; tubulin alpha
E 118309984 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 118300472 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118284116 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118318492 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118319564 cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118302905 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 118300340 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 118285628 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 118288118 tnrc6ba; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 118288382 trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 118288476 trinucleotide repeat-containing gene 6B protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 118312893 tnrc6c2; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 118288411 tnrc6c1; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 118314867 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 118314870 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 118287325 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 118314297 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 118292335 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 118315015 cnot4a; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 118319051 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118313638 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118300342 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118319238 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118302679 granule associated Rac and RHOG effector protein 1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 118310668 dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 118316360 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 118291474 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 118287745 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 118300176 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 118288324 protein Tob1 K14443 TOB; protein Tob/BTG
E 118288460 protein Tob2 K14443 TOB; protein Tob/BTG
E 118300635 si:dkey-79d12.5; protein BTG3 K14443 TOB; protein Tob/BTG
E 118319143 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 118300830 btg4; protein BTG4 isoform X1 K14443 TOB; protein Tob/BTG
E 118310071 eif4enif1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 118312397 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 118302249 enhancer of mRNA-decapping protein 3 isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 118315192 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 118315380 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 118312114 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 118290029 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 118283023 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 118319130 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 118319060 E3 ubiquitin-protein ligase TRIM39-like K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 118311123 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 118318980 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 118283298 interferon-induced, double-stranded RNA-activated protein kinase isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 118283304 interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 118300045 zar1l; ZAR1-like protein isoform X1 K18762 ZAR1; zygote arrest protein 1
E 118317815 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 118316938 ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 118317467 YTH domain-containing family protein 1-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 118291242 ythdf3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 118286071 ythdf2; YTH domain-containing family protein 2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 118283945 tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 118284907 cytotoxic granule associated RNA binding protein TIA1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 118313369 cytotoxic granule associated RNA binding protein TIA1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 118317571 embryonic polyadenylate-binding protein-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 118291850 polyadenylate-binding protein 1A isoform X1 K13126 PABPC; polyadenylate-binding protein
E 118286185 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 118299028 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 118310018 stau1; double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 118291549 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 118300064 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118317691 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 118319277 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 118317672 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 118286151 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 118319652 g3bp1; ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 118312298 g3bp2a; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 118297491 eif2a; eukaryotic translation initiation factor 2A isoform X2 K15026 EIF2A; translation initiation factor 2A
E 118311997 eif3ba; eukaryotic translation initiation factor 3, subunit Ba K03253 EIF3B; translation initiation factor 3 subunit B
E 118310391 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 118303936 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 118312031 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 118309092 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 118309485 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 118310249 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 118302963 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 118298913 eukaryotic translation initiation factor 4 gamma 1-like isoform X4 K03260 EIF4G; translation initiation factor 4G
E 118315150 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b isoform X1 K03260 EIF4G; translation initiation factor 4G
E 124850049 eukaryotic translation initiation factor 4 gamma 3-like K03260 EIF4G; translation initiation factor 4G
E 118319493 rps6kal; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118285741 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118291553 rps6ka3b; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118302770 ribosomal protein S6 kinase alpha-2-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 118319638 guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 118285230 traf2b; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 118285297 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 118313432 traf2a; TNF receptor-associated factor 2 isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 118318984 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 118316447 hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 118302513 tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 118316775 la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 118310881 larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
E 118309140 larp4ab; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 118316312 dcp1a; mRNA-decapping enzyme 1A isoform X1 K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 118292774 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 118285065 dcp2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 118299908 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118312690 ddx61; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118292144 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 118302249 enhancer of mRNA-decapping protein 3 isoform X1 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 118315192 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 118315380 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 118312397 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 118313618 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 118317904 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 118309692 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 118318177 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 118291358 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 118313076 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 118318714 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 118287622 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 118310485 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 118290333 xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 118316662 zgc:103759; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 118319903 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 118312178 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 118312406 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 118284597 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 118320059 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 118311089 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 118299190 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 118315130 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 118292135 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 118301037 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 118312134 exosc9; exosome complex component RRP45 isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 118283914 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 118317260 exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 118283737 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 118314840 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 118311356 tent4a; terminal nucleotidyltransferase 4A K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 118301964 tent4b; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 118311504 terminal nucleotidyltransferase 4A-like isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 118313249 zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 118319845 zinc finger CCHC domain-containing protein 7-like K12597 AIR1_2; protein AIR1/2
E 118285190 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 118291938 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 118313363 ttc37; tetratricopeptide repeat protein 37 isoform X1 K12600 SKI3; superkiller protein 3
E 118315512 wdr61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 118319051 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118313638 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 118314867 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 118314870 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 118287325 CCR4-NOT transcription complex subunit 2-like isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 118314297 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 118292335 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 118315015 cnot4a; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 118300342 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118319238 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 118282755 cnot9; CCR4-NOT transcription complex subunit 9 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 118284654 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 118316360 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 118291474 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 118312418 parn; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 118299068 dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 118287745 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 118300176 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 118288324 protein Tob1 K14443 TOB; protein Tob/BTG
E 118288460 protein Tob2 K14443 TOB; protein Tob/BTG
E 118300635 si:dkey-79d12.5; protein BTG3 K14443 TOB; protein Tob/BTG
E 118319143 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 118300830 btg4; protein BTG4 isoform X1 K14443 TOB; protein Tob/BTG
E 118312003 nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 118319286 nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 118286398 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 118312416 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 118319903 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 118308767 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 118315507 ireb2; iron-responsive element-binding protein 2 isoform X1 K22416 IREB2; iron-responsive element-binding protein 2
E 118312178 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 118286367 nrde2; nuclear exosome regulator NRDE2 isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 118302842 samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 118299353 protein Smaug homolog 2 K27396 SMG; protein Smaug
E 118299172 focad; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 118300707 zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 118316999 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 118311857 endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 118290898 drosha; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 118301388 smfn; small fragment nuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 118310078 eno1b; enolase 1b, (alpha) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 118316411 eno1a; enolase 1a, (alpha) isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 118284605 eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 118292013 gamma-enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 118315188 gamma-enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 118283979 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 118309995 pfkmb; phosphofructokinase, muscle b isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 118316220 pfkma; phosphofructokinase, muscle a K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 118282489 pfkla; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 118311281 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 118291136 pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 118318998 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 118320375 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 118284597 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 118312406 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 118311089 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 118292135 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024