+F Repair protein KO #

  DNA Repair and Recombination Proteins - Sphingopyxis macrogoltabida 203

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LH19_16790 cyclopropane-fatty-acyl-phospholipid synthase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LH19_02815 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LH19_22780 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LH19_21125 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LH19_25380 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LH19_02390 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LH19_25510 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LH19_16790 cyclopropane-fatty-acyl-phospholipid synthase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LH19_02815 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LH19_19215 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LH19_11180 2OG-Fe(II) oxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E LH19_22780 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LH19_24040 2-hydroxyacid dehydrogenase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E LH19_02055 DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E LH19_08540 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E LH19_07740 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E LH19_14860 DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E LH19_21125 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LH19_25550 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LH19_25380 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LH19_22635 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LH19_11420 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LH19_01745 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LH19_25060 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LH19_19925 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LH19_02800 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LH19_10335 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E LH19_05065 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E LH19_09345 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E LH19_05835 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LH19_08780 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LH19_28050 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LH19_02800 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E LH19_19925 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LH19_13635 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LH19_13630 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LH19_19670 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LH19_15080 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LH19_18275 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LH19_24210 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E LH19_05695 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LH19_22895 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LH19_01645 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LH19_07715 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LH19_04740 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LH19_13180 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E LH19_24400 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LH19_09010 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LH19_28040 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LH19_23970 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LH19_10535 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LH19_19925 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LH19_05835 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LH19_08780 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LH19_28050 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LH19_27595 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LH19_05280 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LH19_14240 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LH19_28545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E LH19_24530 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LH19_12975 recombinase RecA K03553 recA; recombination protein RecA E LH19_17460 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LH19_17475 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LH19_17455 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E LH19_19195 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E LH19_12975 recombinase RecA K03553 recA; recombination protein RecA E LH19_02325 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E LH19_13610 recombinase RecF K03629 recF; DNA replication and repair protein RecF E LH19_18265 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LH19_25060 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LH19_09335 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E LH19_04955 recombinase RecR K06187 recR; recombination protein RecR E LH19_19945 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E LH19_17460 ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LH19_17475 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LH19_17455 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E LH19_18785 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LH19_18780 helicase K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E LH19_00215 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E LH19_11430 DNA repair protein K10979 ku; DNA end-binding protein Ku E LH19_24705 DNA repair protein K10979 ku; DNA end-binding protein Ku E LH19_11415 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E LH19_24710 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LH19_07590 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LH19_24925 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LH19_07905 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F LH19_01180 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LH19_11895 integration host factor K03530 hupB; DNA-binding protein HU-beta F LH19_21625 integration host factor K03530 hupB; DNA-binding protein HU-beta F LH19_11185 integration host factor K03530 hupB; DNA-binding protein HU-beta F LH19_10520 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LH19_25060 recombinase RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LH19_09335 DNA recombination protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F LH19_04955 recombinase RecR K06187 recR; recombination protein RecR F LH19_19925 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F LH19_15530 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F LH19_06445 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F LH19_24340 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LH19_10335 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F LH19_05065 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LH19_06530 DNA repair protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D LH19_12975 recombinase RecA K03553 recA; recombination protein RecA D LH19_07625 LexA family transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D LH19_07000 phosphatidylglycerol:prolipoprotein diacylglycerol transferase K01356 lexA; repressor LexA [EC:3.4.21.88] D LH19_19945 DNA recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D LH19_21560 protein ImuA K14160 imuA; protein ImuA D LH19_23330 hypothetical protein K14160 imuA; protein ImuA D LH19_05855 damage-inducible protein K14160 imuA; protein ImuA D LH19_11100 damage-inducible mutagenesis protein K14160 imuA; protein ImuA D LH19_21555 protein ImuB K14161 imuB; protein ImuB D LH19_23335 nucleotidyltransferase K14161 imuB; protein ImuB D LH19_05850 nucleotidyltransferase K14161 imuB; protein ImuB D LH19_11105 nucleotidyltransferase K14161 imuB; protein ImuB D LH19_21550 dnaE2; DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D LH19_23350 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D LH19_05845 dnaE2; DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D LH19_11110 dnaE2; DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D LH19_27595 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LH19_05280 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LH19_14240 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LH19_28545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LH19_24530 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LH19_20070 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LH19_15515 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D LH19_24915 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D LH19_02390 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LH19_25510 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LH19_00915 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LH19_00905 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024