+E Ribosome biogenesis KO
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Ribosome Biogenesis - Streptococcus mitis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D smi_1210 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C smi_0970 era; GTPase/GTP-binding protein Era K03595 era; GTPase
C smi_0998 obg; GTP-binding protein, GTP1/Obg family K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C smi_0376 nusA; transcription termination-antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C smi_1671 nusB; transcription termination factor nusB K03625 nusB; transcription antitermination protein NusB
C smi_0238 transcription antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D smi_0267 rsuA1; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D smi_1454 rsuA3; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D smi_0295 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D smi_1624 rRNA-specific 5-methylcytidine transferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D smi_0888 16S RNA G1207 methylase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D smi_0314 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D smi_0564 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D smi_1243 gidB; methyltransferase GidB (glucose inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D smi_1769 mraW; S-adenosyl-methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D smi_0941 methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D smi_1017 conserved hypothetical protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D smi_0136 rrmA; 23S rRNA m1G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D smi_1378 trmH; tRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D smi_2087 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D smi_0754 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D smi_0819 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D smi_1017 conserved hypothetical protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D smi_1119 conserved hypothetical protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D smi_0339 rsuA2; ribosomal small subunit pseudouridine synthase A K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D smi_1180 rluA3; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D smi_0233 rluA1; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D smi_0932 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C smi_1952 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C smi_0829 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C smi_0563 ribosomal protein methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C smi_1210 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C smi_1919 holiday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C smi_1594 conserved hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C smi_0685 exp9; superfamily II DNA and RNA helicases ATP-dependent RNA helicase, DEAD-box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C smi_1402 rheB; ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C smi_0970 era; GTPase/GTP-binding protein Era K03595 era; GTPase
C smi_0296 conserved hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C smi_0586 engA; phosphoglycerate dehydrogenase-related protein, GTP-binding protein K03977 engA; GTPase
C smi_0998 obg; GTP-binding protein, GTP1/Obg family K03979 obgE; GTPase [EC:3.6.5.-]
C smi_1063 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
C smi_1474 conserved hypothetical protein K03665 hflX; GTPase
C smi_1639 conserved hypothetical protein K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C smi_1125 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C smi_0642 relA; GTP pyrophosphokinase, stringent response protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C smi_0380 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C smi_0375 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C smi_2073 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C smi_1634 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
C smi_0968 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C smi_1638 conserved hypothetical protein K07574 yhbY; RNA-binding protein
C smi_2056 ribosome-associated protein K05808 hpf; ribosome hibernation promoting factor
C smi_0004 GTP-binding protein K06942 ychF; ribosome-binding ATPase
C smi_1238 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024